View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14094_low_12 (Length: 215)
Name: NF14094_low_12
Description: NF14094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14094_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 26459069 - 26458887
Alignment:
| Q |
20 |
ggttgatcctcgtcatatggttcattccctgtaagattttgtttgatgtcgatgccattcatagaattagtatatggttaaatagaaacttacattcacg |
119 |
Q |
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| T |
26459069 |
ggttgatcctcgtcatatggttcattccctgtaagattttgtttgatgtcgatgccattcatagaattagtatatggttaaatagaaacttacattcacg |
26458970 |
T |
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| Q |
120 |
taatattaaaaatttaaaggcaataataataaaatggaaaatgaatagaaggcatgaagttaccaaagtcctccacctatgct |
202 |
Q |
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| T |
26458969 |
taatattaaaaatttaaaggcaataataataaaatgaaaaatgaatagaaggcatgaagttaccaaagtcctccacctctgct |
26458887 |
T |
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Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 29677856 - 29677683
Alignment:
| Q |
20 |
ggttgatcctcgtcatatggttcattccctgtaagattttgtttgatgtcgatgccattcatagaattagtatatggttaaatagaaacttacattcacg |
119 |
Q |
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| T |
29677856 |
ggttgttcctcatcatatggttcattccctataagatt--gtttaatgtcgatgccattcatagaattagtatatggttaaatagaatcttacattcaca |
29677759 |
T |
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| Q |
120 |
taatattaaaaatttaaaggcaataataataaaatggaaaatgaatagaaggcatgaagttaccaaagtcctccacctatgct |
202 |
Q |
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| T |
29677758 |
tgatattaaaaatttaaatgcaataataataa-------aatgaatagaaggcatgaagttaccaaagtcctccacctctgct |
29677683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 34 - 195
Target Start/End: Complemental strand, 44879095 - 44878942
Alignment:
| Q |
34 |
atatggttcattccctgtaagattttgtttgatgtcgatgccattcatagaattagtatatggttaaatagaaacttacattcacgtaatattaaaaatt |
133 |
Q |
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| T |
44879095 |
atatggttcattccctgtaagatttcgtttgatatcgatgccattcataaacgtagtatacgcttaaatagaattttacattccattaat-taaaaaatt |
44878997 |
T |
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| Q |
134 |
taaaggcaataataataaaatggaaaatgaatagaaggcatgaagttaccaaagtcctccac |
195 |
Q |
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| T |
44878996 |
gaaaggtaataataat-------aaaatgaatagaaggcatgaagttacctaattcctccac |
44878942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 44879252 - 44879303
Alignment:
| Q |
32 |
tcatatggttcattccctgtaagattttgtttgatgtcgatgccattcatagaa |
85 |
Q |
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| T |
44879252 |
tcatatggttcattcccggtaagata--gtttgatgtcgatgtcattcatagaa |
44879303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 34 - 148
Target Start/End: Original strand, 11491566 - 11491678
Alignment:
| Q |
34 |
atatggttcattccctgtaagattttgtttgatgtcgatgccattcatagaattagtatatggttaaatagaaacttacattcacgtaatattaaaaatt |
133 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||| |||||||| ||| | | ||||| | |
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| T |
11491566 |
atatggttcattccctgtaagattttgtttgatgtcaatgccattcagagaatt-ttatatggttaaatagaattctacattcaagtagtgtgaaaaa-t |
11491663 |
T |
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| Q |
134 |
taaaggcaataataa |
148 |
Q |
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|||||||||||||| |
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| T |
11491664 |
gaaaggcaataataa |
11491678 |
T |
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