View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14094_low_6 (Length: 394)
Name: NF14094_low_6
Description: NF14094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14094_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 280
Target Start/End: Original strand, 6817900 - 6818166
Alignment:
| Q |
14 |
aggacataccatttgcaacgaaattgacatctaaatctaaatgggatttggttttgatatattattgttaatgaccggcaaagaataatcttagtgggaa |
113 |
Q |
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| T |
6817900 |
aggacaaaccattttcaacgaaattgacatctaaatctaaatgggatttggttttgatatattattgttaatgaccggcaaagaataatcttagcgggag |
6817999 |
T |
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| Q |
114 |
gtgagtaagtgattgaatnnnnnnntaaatgagtggatgggtggttcctaccatagtcaatctcagatagcattgtgtatcggtcgacttcaaaagtgag |
213 |
Q |
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| T |
6818000 |
gtgagtaagtgattgaataaaaaaataaatgagtgaatgggtggttcctaacatagtcaatctcggatagcattgtgtatcggtcgacttcaaaagtgag |
6818099 |
T |
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| Q |
214 |
atagcggtatgacaaataacgatcattgagattttattattattttttggacaaattacataacatt |
280 |
Q |
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| T |
6818100 |
acagcggtatgacaaataatgatcattcatattttattattattttttggacaaattatataacatt |
6818166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 214
Target Start/End: Original strand, 6818163 - 6818193
Alignment:
| Q |
184 |
cattgtgtatcggtcgacttcaaaagtgaga |
214 |
Q |
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| T |
6818163 |
cattgtgtatcggtcgacttcaaaagtgaga |
6818193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 53712155 - 53712099
Alignment:
| Q |
67 |
ttgatatattattgttaatgaccggcaaagaataatcttagtgggaagtgagtaagt |
123 |
Q |
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| T |
53712155 |
ttgatatcttattcgtaatgactaacaaagaataatcttagtgggaagtgagtaagt |
53712099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 274
Target Start/End: Original strand, 27707909 - 27707967
Alignment:
| Q |
214 |
atagcggtatgacaaataacgatcattgagattttattattattttttggacaaattacat |
274 |
Q |
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| T |
27707909 |
atagcggtatgacaaatagcggtcactgatattttg--attattttttggacaaattacat |
27707967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 274
Target Start/End: Complemental strand, 35819492 - 35819389
Alignment:
| Q |
168 |
agtcaatctcagatagcattgtgtatcggtcgacttcaaaagtgagatagcggtatgacaaataacgatcattgagattttattattattttttggacaa |
267 |
Q |
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| T |
35819492 |
agtcaatctcagatagcggcgcgtagcggccgacctcaaaagtgggatagcggtattacaaatagcggtcaccgatatt---tgattattttttgaacaa |
35819396 |
T |
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| Q |
268 |
attacat |
274 |
Q |
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||||||| |
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| T |
35819395 |
attacat |
35819389 |
T |
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