View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14094_low_8 (Length: 248)
Name: NF14094_low_8
Description: NF14094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14094_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 17757132 - 17756934
Alignment:
| Q |
14 |
agatgaatatgaagaaattgtgcaaatatgggtgaattactacaaatgttgaagttttgttgactaagtaaattctcatggcaatgaagaccttattgaa |
113 |
Q |
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| T |
17757132 |
agatgaatatgaagaaattgtgcaaatatgggtgaattactacaaatgttgaagtcttgttgactaagtaaattctcatggcaatgaagaccttattaaa |
17757033 |
T |
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| Q |
114 |
cacaaaattagtgggaaatcaagttgctaacacttcaaatttgtagtcataagtttcaaaactatcatcaatcaaccaagaaagccaaatgatcaaagc |
212 |
Q |
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| T |
17757032 |
cacaaaattagtgggaaatcaagttgctaacacttcaaatttgtagtcataagtttcaaaactatcatcaatcaaccaagaaagccaaattatcaaagc |
17756934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 32078731 - 32078596
Alignment:
| Q |
18 |
gaatatgaagaaattgtgcaaatatgggtgaattactacaaatgttgaagttttgttgactaagtaaattctcatggcaatgaagaccttattgaacaca |
117 |
Q |
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| T |
32078731 |
gaatatgaagaaatgatgcaaatatgatcgaatttcttcaaatgttgaagttttgttgaccaagcaaaaaataatggcaatgacaaccttattgaaaata |
32078632 |
T |
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| Q |
118 |
aaattagtgggaaatcaagttgctaacacttcaaatt |
154 |
Q |
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| T |
32078631 |
aaattagtgggaaatcaagtttc-aacacttcaaatt |
32078596 |
T |
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