View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14095_high_11 (Length: 213)

Name: NF14095_high_11
Description: NF14095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14095_high_11
NF14095_high_11
[»] chr6 (1 HSPs)
chr6 (1-189)||(31273900-31274088)
[»] chr1 (5 HSPs)
chr1 (1-189)||(26215362-26215550)
chr1 (10-174)||(9802095-9802259)
chr1 (119-190)||(49639396-49639467)
chr1 (11-177)||(37737098-37737264)
chr1 (11-44)||(32611003-32611036)
[»] chr3 (3 HSPs)
chr3 (5-190)||(23373636-23373821)
chr3 (23-190)||(19428300-19428467)
chr3 (119-190)||(53979832-53979903)
[»] chr7 (3 HSPs)
chr7 (10-177)||(3005158-3005325)
chr7 (59-162)||(19813037-19813140)
chr7 (101-174)||(18477788-18477861)
[»] chr2 (3 HSPs)
chr2 (94-160)||(4939057-4939123)
chr2 (94-160)||(5024147-5024213)
chr2 (11-177)||(23682475-23682641)
[»] scaffold0164 (1 HSPs)
scaffold0164 (119-190)||(25469-25540)
[»] chr8 (2 HSPs)
chr8 (125-183)||(18550969-18551027)
chr8 (119-180)||(15194824-15194885)
[»] chr4 (1 HSPs)
chr4 (119-180)||(18255691-18255752)


Alignment Details
Target: chr6 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 31274088 - 31273900
Alignment:
Q  1 ccccaaaatctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaact 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  31274088 ccccaaaatctgaagagctgaatctctaggaaagaataaacctttgcctaaagatgttttaagatatttgagtactctcatagcagcagaatgatgaact 31273989  T
Q  101 tgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaac 189  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31273988 tgtgtacgcttagcgaggaactggctcaattgctgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaac 31273900  T

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Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 26215550 - 26215362
Alignment:
Q  1 ccccaaaatctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaact 100  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||  ||| |||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  26215550 ccccaaaatctgaagagctgaatctctaggaaaaaataaaccttttcctagagatgttttaagatatttgagcactctcatagcagcagaatgatgaact 26215451  T
Q  101 tgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaac 189  Q
    || |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26215450 tgggtaggcttagtgaggaactggctcaattgctgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacagcctaccaac 26215362  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 10 - 174
Target Start/End: Original strand, 9802095 - 9802259
Alignment:
Q  10 ctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggc 109  Q
    |||||| || ||||||||||  ||||| ||||||| ||||||| |  | ||||| ||  |||||||||||||||||| || |   ||||  ||||| ||     
T  9802095 ctgaagtgtggaatctctagtgaagaacaaacctttgcctggacaactcttaaggtacctgagtactctcatagcagcagtaaagtgaatatgtgtgggt 9802194  T
Q  110 ttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagata 174  Q
    |||| ||| || || ||||||||||||||||  ||||||||||||||||||||||| || |||||    
T  9802195 ttagtgagaaattgactcaattgttgagtaatgaaagtaatatcaggtcttgttgtattgagata 9802259  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 49639396 - 49639467
Alignment:
Q  119 aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaact 190  Q
    ||||||||||||||||||  |||||||| ||||||||||||||| ||  |||||||||||||| | ||||||    
T  49639396 aactggctcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaactttccaact 49639467  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 177
Target Start/End: Original strand, 37737098 - 37737264
Alignment:
Q  11 tgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggct 110  Q
    |||| ||| |||||||| ||||||| ||| |||| ||||||| |  |||| || ||  |||| ||||||||||||| ||  | ||| | |||||| ||||    
T  37737098 tgaatagtggaatctctgggaaagagtaatcctttgcctggacaacttttgaggtacctgagcactctcatagcagcagtgtaatgtatttgtgttggct 37737197  T
Q  111 tagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaa 177  Q
    | | ||| || || |||||||||||  | | ||| ||||||||||||||||||||||| ||||||||    
T  37737198 tggtgagaaattgactcaattgttgtattataaaggtaatatcaggtcttgttgtgttcagatacaa 37737264  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 32611003 - 32611036
Alignment:
Q  11 tgaagagttgaatctctaggaaagaataaacctt 44  Q
    ||||||| ||||||||||||||||||||||||||    
T  32611003 tgaagaggtgaatctctaggaaagaataaacctt 32611036  T

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Target: chr3 (Bit Score: 122; Significance: 9e-63; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 5 - 190
Target Start/End: Original strand, 23373636 - 23373821
Alignment:
Q  5 aaaatctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaacttgtg 104  Q
    ||||| ||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||| |||| |||||||||| || |||||| |||||||| |    
T  23373636 aaaatatgaagagttgaatctctaggaaataataaacctttgcctgaagatgttttaagatatctgagcactctcatagtagcagaatggtgaacttggg 23373735  T
Q  105 taggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaact 190  Q
    ||||||| |  ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  23373736 taggcttggtaaggaactggctcaattgctgagtaacaaaagtaatatcaggtcttgctgtgttaagatgcaacaacctaccaact 23373821  T

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Target: chr3; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 23 - 190
Target Start/End: Complemental strand, 19428467 - 19428300
Alignment:
Q  23 tctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggcttagcgaggaact 122  Q
    |||||||||||||||||||| | || |||| ||| |||||| ||  |||| ||||||||||||| | |||| |||||||| ||||| ||||  ||||| |    
T  19428467 tctctaggaaagaataaacccttgcttggaaatgatttaaggtacctgagcactctcatagcagcataatggtgaacttgagtaggtttagtaaggaatt 19428368  T
Q  123 ggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaact 190  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||||    
T  19428367 ggctcaattgttgagtgacaaaggtaatgtcaggtcttgttgtgttgagatacaacaacctaccaact 19428300  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 53979903 - 53979832
Alignment:
Q  119 aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaact 190  Q
    ||||||||||||||||||  |||||||| ||||||||||||||| ||  |||||||||||||| | ||||||    
T  53979903 aactggctcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaactttccaact 53979832  T

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Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 10 - 177
Target Start/End: Complemental strand, 3005325 - 3005158
Alignment:
Q  10 ctgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggc 109  Q
    ||||| ||| |||||||| ||||||| ||| |||| ||||||| |  |||| || ||  |||| ||||||||||||| ||  | ||| | |||||| |||    
T  3005325 ctgaatagtggaatctctgggaaagagtaatcctttgcctggataacttttgaggtacctgagcactctcatagcagcagtgtaatgtatttgtgttggc 3005226  T
Q  110 ttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaa 177  Q
    || | ||| || || ||||||||||| || | ||| ||||||||||||||||||||||| ||||||||    
T  3005225 ttggtgagaaattgactcaattgttgtgttataaaggtaatatcaggtcttgttgtgttcagatacaa 3005158  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 59 - 162
Target Start/End: Original strand, 19813037 - 19813140
Alignment:
Q  59 ttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtc 158  Q
    ||||||||| |||||||||||||||||| |  ||  ||||  |||||||| || | ||| ||||||||||||||||| |||| ||| ||||||| |||||    
T  19813037 ttaagatatctgagtactctcatagcagcattatagtgaatgtgtgtaggtttggagagaaactggctcaattgttgtgtaataaaggtaatattaggtc 19813136  T
Q  159 ttgt 162  Q
    ||||    
T  19813137 ttgt 19813140  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 174
Target Start/End: Complemental strand, 18477861 - 18477788
Alignment:
Q  101 tgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagata 174  Q
    |||||||| |||  ||| || |||||||||| ||||||||||||||||||||||||||| ||||| || |||||    
T  18477861 tgtgtaggtttattgagaaattggctcaattcttgagtaacaaaagtaatatcaggtctagttgtattgagata 18477788  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 4939057 - 4939123
Alignment:
Q  94 atgaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtctt 160  Q
    |||||||||||||||||||| |||||||||||| | |||||||||||  ||||| ||||||||||||    
T  4939057 atgaacttgtgtaggcttagtgaggaactggctaagttgttgagtaatgaaagtgatatcaggtctt 4939123  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 5024147 - 5024213
Alignment:
Q  94 atgaacttgtgtaggcttagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtctt 160  Q
    |||||||||||||||||||| |||||||||||| | |||||||||||  ||||| ||||||||||||    
T  5024147 atgaacttgtgtaggcttagtgaggaactggctaagttgttgagtaatgaaagtgatatcaggtctt 5024213  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 177
Target Start/End: Complemental strand, 23682641 - 23682475
Alignment:
Q  11 tgaagagttgaatctctaggaaagaataaaccttagcctggagatgttttaagatatttgagtactctcatagcagaagaatgatgaacttgtgtaggct 110  Q
    |||| ||| |||||| | ||||| | ||| |||| ||||||| |  |||| |||||  |||| ||||||||||||| |   | ||| |||||||| ||||    
T  23682641 tgaatagtggaatctttgggaaaaagtaatcctttgcctggacaacttttgagatacctgagcactctcatagcagcaatgtaatgtacttgtgttggct 23682542  T
Q  111 tagcgaggaactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaa 177  Q
    | | ||| || || ||||||||||| || | ||| ||||||||||||||||||||||| ||||||||    
T  23682541 tggtgagaaattgactcaattgttgtgttataaaggtaatatcaggtcttgttgtgttcagatacaa 23682475  T

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Target: scaffold0164 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 25469 - 25540
Alignment:
Q  119 aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacctaccaact 190  Q
    ||||||||||||||||||  |||||||| ||||||||||||||| ||  |||||||||||||| | ||||||    
T  25469 aactggctcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaactttccaact 25540  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 183
Target Start/End: Original strand, 18550969 - 18551027
Alignment:
Q  125 ctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaacct 183  Q
    ||||||||||||||||||||||| ||||||||||||||||| || ||||| | ||||||    
T  18550969 ctcaattgttgagtaacaaaagtgatatcaggtcttgttgtattgagataaagcaacct 18551027  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 180
Target Start/End: Complemental strand, 15194885 - 15194824
Alignment:
Q  119 aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaa 180  Q
    ||||||||||||||||||  |||||||| ||||||||||||||| ||  |||||||||||||    
T  15194885 aactggctcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaa 15194824  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 180
Target Start/End: Complemental strand, 18255752 - 18255691
Alignment:
Q  119 aactggctcaattgttgagtaacaaaagtaatatcaggtcttgttgtgttaagatacaacaa 180  Q
    ||||| ||||||||||||  |||||||| ||||||||||||||| ||  |||||||||||||    
T  18255752 aactgactcaattgttgaacaacaaaagcaatatcaggtcttgtagttgtaagatacaacaa 18255691  T

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