View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14095_high_2 (Length: 540)
Name: NF14095_high_2
Description: NF14095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14095_high_2 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 94 - 540
Target Start/End: Original strand, 29691000 - 29691447
Alignment:
| Q |
94 |
gcaaagggtatccagatatatgtgccaatcccaagaagaagaagtagattgtgctgtgtgtctctgcacaatgaaagaaagggaagagattagagtccta |
193 |
Q |
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| T |
29691000 |
gcaaagggtatccagatatatgtgccaatcccaagaagaagaagtagattgtgctgtgtgtctctgcacaatgaaagaaagggaagagattagagtccta |
29691099 |
T |
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| Q |
194 |
aagtgtgaacatgtcttccacaaagattgtttggatacttggtatagctttaaatacaacaatacaacttgtcctctttgcagagtttcagttggtccac |
293 |
Q |
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| T |
29691100 |
aagtgtgaacatgtcttccacaaagattgtttggatacttggtatagctttaaatacaacaatacaacttgtcctctttgcagagtttcagttggtccac |
29691199 |
T |
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| Q |
294 |
taagagaccttgatgctaaatttactatacatgatgctgattttcagataccatggctgcggtgaccctatagcagttattatagtttttacggattctg |
393 |
Q |
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| T |
29691200 |
taagagaccttgatgctaaagttactatacatgatgctgattttcagataccatggctgcggtgaccctatagcagttattttagtttttacggattctg |
29691299 |
T |
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| Q |
394 |
tctcaaattatacatacgttgtattataatatcaatataaaataattttgttcttcctaaataatctttgtctattgttatctttttactac-tttttta |
492 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29691300 |
tctcaaattatacatacgttgtattataatatcaatataaaataattttgttcttcctaaataatctttgtctattgttatctttttactacttttttta |
29691399 |
T |
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| Q |
493 |
actcaagcatattttcattcttatctcgataacatcccaccatatttt |
540 |
Q |
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| T |
29691400 |
actcaagcatattttcattcttatctcgataacatcgcaccatatttt |
29691447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 29690443 - 29690526
Alignment:
| Q |
18 |
tcaagtggatattcaacttattttccagctacctatgctatcccttatgcaaacttcaaggttcttatcatcatcagcaaaggg |
101 |
Q |
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| T |
29690443 |
tcaagtggatattcaacttattttccagctacctatgctatcccttatgcaaacttcaaggttcttatcatcatcagcaaaggg |
29690526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 132 - 310
Target Start/End: Original strand, 27651 - 27829
Alignment:
| Q |
132 |
aagaagtagattgtgctgtgtgtctctgcacaatgaaagaaagggaagagattagagtcctaaagtgtgaacatgtcttccacaaagattgtttggatac |
231 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||| |||||||||||| || |||||||||||||| ||||| |
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| T |
27651 |
aagaagtagattgtgctgtgtgtctctgcacgatgaaagaaaaggaagagattagagtgctacggtgtgaacatgtgtttcacaaagattgtttcgatac |
27750 |
T |
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| Q |
232 |
ttggtatagctttaaatacaacaatacaacttgtcctctttgcagagtttcagttggtccactaagagaccttgatgct |
310 |
Q |
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| T |
27751 |
atggattagatacaaatacaataatacaacttgccctctttgcagagtttcagtaggttcaataagagaggttgatgct |
27829 |
T |
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