View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14095_high_4 (Length: 511)
Name: NF14095_high_4
Description: NF14095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14095_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 24404359 - 24404157
Alignment:
| Q |
1 |
aaaggtttttggttaatatggcacgctgggatttggaaatatagaaatgattgaatttgtaatgactgcgtgaaggagttggatgagatggtcgaggaaa |
100 |
Q |
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| T |
24404359 |
aaaggtttttggttaatatggcacgctggaatttggaaatctagaaatgattgaatttgtaatgactgcgtgaaggagttggatgagatggtcgaggaaa |
24404260 |
T |
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| Q |
101 |
tcaaagtgttgttctggcaatggaatttacacaggttgaagaaccttccatgcttgctctatgaatggttatggaatccaatggacggtcttctaagata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24404259 |
tcaaagtgttgttctggcaatggaatttacacaggttgaagaaccttccatgcttgctctatgaatggttatggaatccaatggacggtcttctaagata |
24404160 |
T |
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| Q |
201 |
ggg |
203 |
Q |
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||| |
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| T |
24404159 |
ggg |
24404157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 360 - 496
Target Start/End: Complemental strand, 24403763 - 24403623
Alignment:
| Q |
360 |
ctgttatttgtttcattttcaattgtgctgccattctgttcctcatgcttgtgaaatcgatccgatactgcacatgctatcgatgtaccatcatcgtccc |
459 |
Q |
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| T |
24403763 |
ctgttatttgtttcattttcaattgtgctgccattctgttcctcatgcttgtgaaatcgatccgatactacacatgctatcgatgtaccatcatcgtccc |
24403664 |
T |
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| Q |
460 |
ttgtaaaatggctgcaaa----taaacagaacagtactctt |
496 |
Q |
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| T |
24403663 |
ttgtaaaatggctgcaaagccttaaacagaacagtactctt |
24403623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 292 - 363
Target Start/End: Complemental strand, 24404070 - 24404000
Alignment:
| Q |
292 |
ctgcagttccatgtttagcagtccttgaaattctattgttggggtttaccgcaatacgggcctctgtactgt |
363 |
Q |
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| T |
24404070 |
ctgcagttccatgtttagcagtccttgaaattctattgttgggg-ttaccgcaatacgggcctctgtactgt |
24404000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 496
Target Start/End: Complemental strand, 12131648 - 12131527
Alignment:
| Q |
378 |
tcaattgtgctgccat-tctgttcctcatgcttgtgaaatcgatcc-gatactgcacatgctatcgatgtaccatcatcgtcccttgtaaaatggctgca |
475 |
Q |
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|||||||||||||||| || || |||| ||||||||||| ||||| ||||||||| ||||||| |||| || ||||| ||| ||||||||| |||| |
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| T |
12131648 |
tcaattgtgctgccatctcggtgcctcgtgcttgtgaaaatgatcctgatactgcaaatgctattaatgtgccgtcatc---cctcgtaaaatggttgca |
12131552 |
T |
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| Q |
476 |
aa----taaacagaacagtactctt |
496 |
Q |
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|| ||||||||||||||||||| |
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| T |
12131551 |
aagctttaaacagaacagtactctt |
12131527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 79 - 203
Target Start/End: Complemental strand, 35846492 - 35846368
Alignment:
| Q |
79 |
ttggatgagatggtcgaggaaatcaaagtgttgttctggcaatggaatttacacaggttgaagaaccttccatgcttgctctatgaatggttatggaatc |
178 |
Q |
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||||||||| ||| ||||| ||||||||||||| |||| |||||| |||||| ||| |||||| || ||||| | |||||||||||||| ||| ||||| |
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| T |
35846492 |
ttggatgagttgggtgaggatatcaaagtgttgtcctggtaatggagtttacagaggctgaagacccctccatacctgctctatgaatggctattgaatc |
35846393 |
T |
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| Q |
179 |
caatggacggtcttctaagataggg |
203 |
Q |
| |
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||| |||| ||||||| |||||||| |
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| T |
35846392 |
caagggactgtcttcttagataggg |
35846368 |
T |
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