View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14095_low_5 (Length: 434)

Name: NF14095_low_5
Description: NF14095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14095_low_5
NF14095_low_5
[»] chr4 (23 HSPs)
chr4 (148-432)||(44235740-44236024)
chr4 (3-151)||(27550358-27550504)
chr4 (1-152)||(1771170-1771319)
chr4 (1-148)||(33703188-33703333)
chr4 (1-148)||(43949709-43949854)
chr4 (1-151)||(55966251-55966399)
chr4 (1-150)||(28982728-28982875)
chr4 (1-148)||(27893750-27893895)
chr4 (7-149)||(23036033-23036173)
chr4 (4-148)||(25051743-25051885)
chr4 (13-148)||(35017791-35017924)
chr4 (1-150)||(27864611-27864758)
chr4 (2-151)||(43735790-43735937)
chr4 (1-142)||(48463364-48463503)
chr4 (7-124)||(31680955-31681070)
chr4 (4-124)||(23204710-23204828)
chr4 (1-124)||(27316644-27316766)
chr4 (3-124)||(39631150-39631269)
chr4 (3-148)||(43514594-43514737)
chr4 (3-124)||(45490245-45490364)
chr4 (1-148)||(51512173-51512318)
chr4 (14-118)||(46412407-46412509)
chr4 (1-108)||(12497003-12497108)
[»] chr6 (14 HSPs)
chr6 (1-154)||(7367596-7367747)
chr6 (1-150)||(21279976-21280123)
chr6 (4-150)||(9698239-9698383)
chr6 (2-148)||(24203895-24204039)
chr6 (1-154)||(30014390-30014541)
chr6 (1-149)||(21293584-21293730)
chr6 (1-147)||(13743130-13743274)
chr6 (1-147)||(13748630-13748774)
chr6 (1-150)||(3213447-3213594)
chr6 (1-150)||(7273241-7273388)
chr6 (3-152)||(26669913-26670060)
chr6 (2-150)||(26466847-26466993)
chr6 (4-142)||(7292797-7292933)
chr6 (3-148)||(30736031-30736174)
[»] chr2 (13 HSPs)
chr2 (4-153)||(43490304-43490451)
chr2 (4-151)||(19047207-19047352)
chr2 (1-148)||(43335671-43335816)
chr2 (1-150)||(30838679-30838826)
chr2 (1-147)||(42849768-42849911)
chr2 (4-148)||(1750464-1750606)
chr2 (1-149)||(4764633-4764779)
chr2 (1-148)||(16096794-16096940)
chr2 (4-149)||(12302160-12302303)
chr2 (4-149)||(39149201-39149342)
chr2 (17-151)||(34817681-34817813)
chr2 (8-112)||(13780679-13780781)
chr2 (102-150)||(29739358-29739406)
[»] scaffold0038 (1 HSPs)
scaffold0038 (4-151)||(112705-112850)
[»] chr3 (19 HSPs)
chr3 (4-151)||(42394324-42394469)
chr3 (4-148)||(54237146-54237288)
chr3 (1-149)||(46941100-46941246)
chr3 (4-148)||(24688310-24688452)
chr3 (1-148)||(40808912-40809057)
chr3 (1-151)||(47190931-47191079)
chr3 (4-149)||(52629878-52630021)
chr3 (4-148)||(53581766-53581908)
chr3 (1-148)||(45126836-45126981)
chr3 (4-148)||(40480799-40480941)
chr3 (4-151)||(36150180-36150325)
chr3 (1-106)||(53273634-53273737)
chr3 (1-148)||(42100735-42100880)
chr3 (4-149)||(25413731-25413874)
chr3 (4-150)||(54246054-54246198)
chr3 (76-150)||(1078338-1078412)
chr3 (3-100)||(51249357-51249452)
chr3 (91-151)||(29556864-29556924)
chr3 (4-106)||(27748613-27748713)
[»] chr8 (18 HSPs)
chr8 (3-148)||(2547045-2547188)
chr8 (4-149)||(11582816-11582959)
chr8 (4-149)||(36743390-36743533)
chr8 (7-152)||(20148813-20148956)
chr8 (4-147)||(42197344-42197485)
chr8 (2-148)||(42295243-42295386)
chr8 (1-120)||(5754950-5755067)
chr8 (1-143)||(29705409-29705549)
chr8 (1-142)||(29800864-29801003)
chr8 (4-147)||(26125685-26125825)
chr8 (1-148)||(31384711-31384856)
chr8 (7-148)||(9241605-9241744)
chr8 (4-149)||(45397366-45397508)
chr8 (3-154)||(30912464-30912613)
chr8 (1-148)||(3743818-3743963)
chr8 (4-150)||(30660648-30660792)
chr8 (1-124)||(2165895-2166016)
chr8 (1-151)||(1375589-1375737)
[»] chr7 (21 HSPs)
chr7 (4-149)||(24000919-24001062)
chr7 (4-148)||(42538339-42538481)
chr7 (7-152)||(44326231-44326374)
chr7 (7-154)||(5810826-5810971)
chr7 (1-148)||(32029725-32029870)
chr7 (14-148)||(41861736-41861868)
chr7 (3-152)||(35069770-35069917)
chr7 (1-149)||(44416841-44416987)
chr7 (3-142)||(5015444-5015581)
chr7 (1-148)||(43343532-43343677)
chr7 (3-124)||(42972901-42973020)
chr7 (1-148)||(10573796-10573941)
chr7 (1-124)||(38160511-38160632)
chr7 (1-151)||(16180262-16180410)
chr7 (4-145)||(27393171-27393310)
chr7 (1-155)||(4638100-4638252)
chr7 (1-150)||(45326067-45326214)
chr7 (2-124)||(26898334-26898454)
chr7 (41-152)||(47279628-47279739)
chr7 (1-150)||(9216348-9216495)
chr7 (75-123)||(43317562-43317610)
[»] chr5 (9 HSPs)
chr5 (4-149)||(2614556-2614699)
chr5 (4-148)||(41334571-41334713)
chr5 (2-149)||(33801517-33801662)
chr5 (1-150)||(7617180-7617327)
chr5 (2-123)||(22512353-22512472)
chr5 (1-149)||(5257042-5257188)
chr5 (4-148)||(18034032-18034174)
chr5 (1-142)||(38470626-38470765)
chr5 (50-150)||(25914902-25915002)
[»] chr1 (12 HSPs)
chr1 (1-154)||(7447872-7448023)
chr1 (1-148)||(43570994-43571139)
chr1 (3-154)||(48498864-48499013)
chr1 (1-149)||(4401375-4401521)
chr1 (4-148)||(5489826-5489968)
chr1 (1-147)||(37814825-37814969)
chr1 (1-150)||(24769405-24769552)
chr1 (1-149)||(2497469-2497615)
chr1 (1-149)||(4888090-4888235)
chr1 (4-149)||(50448167-50448310)
chr1 (1-152)||(750209-750358)
chr1 (4-148)||(23989431-23989573)
[»] scaffold0119 (1 HSPs)
scaffold0119 (3-152)||(734-881)
[»] scaffold0187 (2 HSPs)
scaffold0187 (4-148)||(14097-14238)
scaffold0187 (4-148)||(24425-24566)
[»] scaffold0385 (1 HSPs)
scaffold0385 (1-148)||(11298-11443)
[»] scaffold0157 (1 HSPs)
scaffold0157 (1-108)||(23369-23474)


Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 148 - 432
Target Start/End: Original strand, 44235740 - 44236024
Alignment:
Q  148 cttttttcttataaaaccaagtaaccaaccatgaccgatcaccaatttaaaagagacctgtccttttctttcaatcacaaatgcatggtcctaaatgaca 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44235740 cttttttcttataaaaccaagtaaccaaccatgaccgatcaccaatttaaaagaaacctgtccttttctttcaatcacaaatgcatggtcctaaatgaca 44235839  T
Q  248 ccgtcaaatttatcacgtagctaaacattgctcgtaccaagatcttttgctgtgatatatatggtccttactccttaataacttctttttatttgaattt 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44235840 ccgtcaaatttatcacgtagctaaacattgctcgtaccaagatcttttgctgtgatatatatggtccttactccttaataacttctttttatttgaattt 44235939  T
Q  348 gaaagttagaggtgtgtgtcccatcgttcggtaccacacaactttcagggaagaatacaaattagcacatggtatgtatgagaat 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44235940 gaaagttagaggtgtgtgtcccatcgttcggtaccacacaactttcagggaagaatacaaattagcacatggtatgtatgagaat 44236024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 3 - 151
Target Start/End: Original strand, 27550358 - 27550504
Alignment:
Q  3 catgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatggg 102  Q
    ||||||||| ||||||||||| |||||||||| ||   ||||||||||||||| ||||||| |||| ||||  ||||||||| |||||||||||||||||    
T  27550358 catgtattagggatattttggtaagttcatcttaca--accacactttatcttctatttatgtggggtccaggttgccacgtgtcagaattttgtatggg 27550455  T
Q  103 tgtaaagggtatattgccacatttagtggtacatctatcatcactcttt 151  Q
    |||||||||| |||||||||||   ||||||||| ||||||||||||||    
T  27550456 tgtaaagggtgtattgccacatggggtggtacatgtatcatcactcttt 27550504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 1771319 - 1771170
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    |||||||||||  |||||||||  |||||||||||||   |||||| |||||||| ||||||| |||| ||||| ||||||||| |||||||||||| ||    
T  1771319 cccatgtattagagatattttgataagttcatctcaca--accacattttatcttctatttatgtggggtccaagttgccacgtctcagaattttgtgtg 1771222  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactctttt 152  Q
    |||||||||||| |||||||||||   ||||||||| |||||||||||||||    
T  1771221 ggtgtaaagggtgtattgccacatggggtggtacatgtatcatcactctttt 1771170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 33703188 - 33703333
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||||||||| ||||||||||| |||||||||||||   ||||||||||||||| ||||| |  ||||||||| ||||||||| |||||||||||| ||    
T  33703188 cccatgtattagggatattttggtaagttcatctcaca--accacactttatcttctatttgtgcgggatccaagttgccacgtgtcagaattttgtgtg 33703285  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactc 148  Q
    |||||||||||| |||||||| ||   ||||||||| |||||||||||    
T  33703286 ggtgtaaagggtgtattgccatatggggtggtacatgtatcatcactc 33703333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 43949854 - 43949709
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||||||||| ||||||||||| |||||||||||||   ||||||||||||||| ||||| |  |||||||||  |||||||| |||||||||||||||    
T  43949854 cccatgtattagggatattttggtaagttcatctcaca--accacactttatcttctatttgtgcgggatccaatatgccacgtgtcagaattttgtatg 43949757  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactc 148  Q
    ||| |||||||| |||||||| ||   ||||||||| |||||||||||    
T  43949756 ggtataaagggtgtattgccaaatagggtggtacatgtatcatcactc 43949709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 55966399 - 55966251
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||||||||| ||||||||||| |||||||||||||   |||||| |||||||| ||||||| |||| || | |||||||| | |||||||||| | ||    
T  55966399 cccatgtattagggatattttggtaagttcatctcaca--accacaatttatcttctatttatgtggggtctagattgccacctgtcagaattttatgtg 55966302  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactcttt 151  Q
    |||||||||||| |||||||||||  |||||||||| ||||| ||||||||    
T  55966301 ggtgtaaagggtgtattgccacatggagtggtacatgtatcaccactcttt 55966251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 28982875 - 28982728
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||| ||||| ||||||||||| |||||||||||||   ||| ||||||||||| ||||| | |||| ||||| ||||||||| |||||||||||| ||    
T  28982875 cccatatattagggatattttggtaagttcatctcaca--accgcactttatcttctatttgtgtggggtccaagttgccacgtgtcagaattttgtgtg 28982778  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactctt 150  Q
    | |||||| ||| |||||||||||   ||||||||| |||||||||||||    
T  28982777 gatgtaaaaggtgtattgccacatggggtggtacatgtatcatcactctt 28982728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 27893895 - 27893750
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||||||||| ||||||||||| || ||||||||||   ||||||||||||||| ||||||| |||| || | |||||||| | |||||||||| | ||    
T  27893895 cccatgtattagggatattttggtaatttcatctcaca--accacactttatcttctatttatgtggggtcaagattgccacatgtcagaattttatgtg 27893798  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactc 148  Q
    |||||||||||| |||||||||||   ||||||||| ||||| |||||    
T  27893797 ggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactc 27893750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 23036033 - 23036173
Alignment:
Q  7 tattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggtgta 106  Q
    ||||| ||||||||| | |||||||||||||   ||||||||||||||| ||||||| |||| ||||  ||||||||| |||||||||||| ||||||||    
T  23036033 tattagggatatttttgtaagttcatctcaca--accacactttatcttctatttatgtggggtccaggttgccacgtgtcagaattttgtgtgggtgta 23036130  T
Q  107 aagggtatattgccacatttagtggtacatctatcatcactct 149  Q
    |||| | | |||||||||   ||||||||| ||||||||||||    
T  23036131 aaggatgtgttgccacatggggtggtacatgtatcatcactct 23036173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 4 - 148
Target Start/End: Original strand, 25051743 - 25051885
Alignment:
Q  4 atgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggt 103  Q
    |||||||| ||||||||||| |||||||||||||   | ||||||||||||| ||||||| |||| ||||| ||||||||| |||||||||||| ||| |    
T  25051743 atgtattagggatattttggtaagttcatctcaca--atcacactttatcttctatttatgtggggtccaagttgccacgtgtcagaattttgtgtggat 25051840  T
Q  104 gtaaagggtatattgccacatttagtggtacatctatcatcactc 148  Q
    ||||| | | ||||||||| |   ||||||||| |||||||||||    
T  25051841 gtaaatgatgtattgccacgtggggtggtacatgtatcatcactc 25051885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 148
Target Start/End: Original strand, 35017791 - 35017924
Alignment:
Q  13 ggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggtgtaaagggt 112  Q
    ||||||||||| |||||||||||||   ||||||||||||||| ||||| | |||| ||||| ||||||||| |||||||||||| ||| |||||| | |    
T  35017791 ggatattttggtaagttcatctcaca--accacactttatcttctatttgtgtggggtccaagttgccacgtgtcagaattttgtgtggatgtaaaagat 35017888  T
Q  113 atattgccacatttagtggtacatctatcatcactc 148  Q
     |||||||||||   ||||||||| |||||||||||    
T  35017889 gtattgccacatggggtggtacatgtatcatcactc 35017924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 27864611 - 27864758
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||||||||| ||||||||||| |||||||||||||   |||||||||||| || ||||||| |||| | || ||| |||| | |||||||||| | ||    
T  27864611 cccatgtattagggatattttggtaagttcatctcaca--accacactttattttctatttatgtggggttcagattaccacatgtcagaattttatgtg 27864708  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactctt 150  Q
    | |||||||||| |||||||||||   ||||||||| ||||| |||||||    
T  27864709 gatgtaaagggtgtattgccacatggggtggtacatgtatcaccactctt 27864758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 2 - 151
Target Start/End: Original strand, 43735790 - 43735937
Alignment:
Q  2 ccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgg 101  Q
    ||||||||||  |||||||||  |||||||||||||   | ||||||||||||| ||||| | |||||||||| ||| ||||| |||||||||| | |||    
T  43735790 ccatgtattagagatattttgataagttcatctcaca--atcacactttatcttctatttgtgtgggatccaagttgtcacgtgtcagaattttatgtgg 43735887  T
Q  102 gtgtaaagggtatattgccacatttagtggtacatctatcatcactcttt 151  Q
     |||||||||| ||||||||| |   ||||||||| ||||||||||||||    
T  43735888 atgtaaagggtgtattgccacgtggggtggtacatgtatcatcactcttt 43735937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 48463503 - 48463364
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||||||||| ||||||||||| |||||||||||||   |||| ||||||| || ||||||| |||| | || ||| |||| | |||||||||| | ||    
T  48463503 cccatgtattagggatattttggtaagttcatctcaca--accatactttattttctatttatgtggggttcagattaccacatgtcagaattttatgtg 48463406  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatca 142  Q
    |||||||||||| |||||||||||  |||||||||| |||||    
T  48463405 ggtgtaaagggtgtattgccacatagagtggtacatgtatca 48463364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 7 - 124
Target Start/End: Original strand, 31680955 - 31681070
Alignment:
Q  7 tattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggtgta 106  Q
    ||||| ||||||||||| |||||||||||||   ||||||||||||||| ||||||| |||| |  | |||||||||| |||||||||| | | ||||||    
T  31680955 tattagggatattttggtaagttcatctcaca--accacactttatcttctatttatgtggggtttagattgccacgtgtcagaattttatgtaggtgta 31681052  T
Q  107 aagggtatattgccacat 124  Q
    |||||| |||||||||||    
T  31681053 aagggtgtattgccacat 31681070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 23204828 - 23204710
Alignment:
Q  4 atgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggt 103  Q
    |||||||| ||||||||| | |||||||| ||||   ||||||||||||||| ||||||| |||| ||||  ||||||| | |||||||||| | |||||    
T  23204828 atgtattagggatatttttgtaagttcatgtcaca--accacactttatcttctatttatgtggggtccaggttgccacatgtcagaattttatgtgggt 23204731  T
Q  104 gtaaagggtatattgccacat 124  Q
    ||||||| |||||||||||||    
T  23204730 gtaaaggatatattgccacat 23204710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 27316766 - 27316644
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaa-ttttgtat 99  Q
    ||||||||||| ||||||||||| ||||||||||||    ||||||||||||||| ||||||| |||  ||||| ||||||||| |||||| |||||| |    
T  27316766 cccatgtattaaggatattttggtaagttcatctcata--accacactttatcttctatttatttggagtccaagttgccacgtgtcagaatttttgtgt 27316669  T
Q  100 gggtgtaaagggtatattgccacat 124  Q
    || |||||||||| ||||| |||||    
T  27316668 ggatgtaaagggtgtattgtcacat 27316644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 3 - 124
Target Start/End: Original strand, 39631150 - 39631269
Alignment:
Q  3 catgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatggg 102  Q
    ||||||||| ||||||||||| |||||||||||||   ||||||||||||||| ||||| | |||| | |||  || ||||| |||||||||||| ||||    
T  39631150 catgtattagggatattttggtaagttcatctcaca--accacactttatcttctatttgtgtggggttcaatatgtcacgtgtcagaattttgtgtggg 39631247  T
Q  103 tgtaaagggtatattgccacat 124  Q
    |||||||| | ||||| |||||    
T  39631248 tgtaaaggatgtattgtcacat 39631269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 3 - 148
Target Start/End: Complemental strand, 43514737 - 43514594
Alignment:
Q  3 catgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatggg 102  Q
    ||||||||| || |||||||| |||||||||||||   ||||||| ||||||| ||||| | |||| || |  ||||||||| |||||||||| | |||     
T  43514737 catgtattagggttattttggtaagttcatctcaca--accacaccttatcttctatttgtgtggggtctaggttgccacgtgtcagaattttttgtgga 43514640  T
Q  103 tgtaaagggtatattgccacatttagtggtacatctatcatcactc 148  Q
    ||||||| || |||||||||||   ||||||||| |||||||||||    
T  43514639 tgtaaagagtgtattgccacatggggtggtacatgtatcatcactc 43514594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 3 - 124
Target Start/End: Complemental strand, 45490364 - 45490245
Alignment:
Q  3 catgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatggg 102  Q
    ||||||||| ||||| ||| | || ||||||||||   ||||||||||||||| ||||| || ||||||||  ||||||||| ||||||| |||| ||||    
T  45490364 catgtattagggatactttagtaaattcatctcaca--accacactttatcttctatttgtacgggatccaggttgccacgtgtcagaatcttgtgtggg 45490267  T
Q  103 tgtaaagggtatattgccacat 124  Q
    |||||| | |||||||||||||    
T  45490266 tgtaaatgatatattgccacat 45490245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 51512318 - 51512173
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    |||||||||||  |||||||||| |||||||||| |    ||||||||||||||||||||| | |||| ||||  ||||||||| |||||||||||| ||    
T  51512318 cccatgtattagagatattttggtaagttcatcttata--accacactttatcttttatttgtgtggggtccaggttgccacgtgtcagaattttgtgtg 51512221  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactc 148  Q
    ||| | || | | ||||||||| |   ||||||||| |||||||||||    
T  51512220 ggtattaaagatgtattgccacgtggggtggtacatgtatcatcactc 51512173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 46412509 - 46412407
Alignment:
Q  14 gatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggtgtaaagggta 113  Q
    |||||||||| |||||| ||||||   ||||||||||||||| ||||||| |||| |  |||||||||||| |||||||||||| | | ||||||  |||    
T  46412509 gatattttggtaagttcttctcaca--accacactttatcttctatttatgtggggtttaaattgccacgtgtcagaattttgtgtagatgtaaaaagta 46412412  T
Q  114 tattg 118  Q
    |||||    
T  46412411 tattg 46412407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 12497003 - 12497108
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    |||||||||||  |||||||||| |||||||||| ||   | ||||||||||||| ||||| | || | | ||| ||||||||| | |||||||||| ||    
T  12497003 cccatgtattagagatattttggtaagttcatcttaca--atcacactttatcttctatttgtgtgaggttcaatttgccacgtgttagaattttgtgtg 12497100  T
Q  101 ggtgtaaa 108  Q
    ||||||||    
T  12497101 ggtgtaaa 12497108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 9e-37; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 7367596 - 7367747
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||||||||| ||||||||||| |||||||||||||   |||||||||||| || ||||||| |||||||||  ||||||||| |||||||||||| ||    
T  7367596 cccatgtattagggatattttggtaagttcatctcaca--accacactttattttctatttatgtgggatccaggttgccacgtgtcagaattttgtgtg 7367693  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactctttttt 154  Q
    |||||||||||| |||||||||||   ||||||||| |||||||| ||||||||    
T  7367694 ggtgtaaagggtgtattgccacatggggtggtacatgtatcatcattctttttt 7367747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 21279976 - 21280123
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||||||||| ||||||||||| || ||||||||||   ||||||||||||||| ||||| | |||| ||||| ||||||||| |||||||||||| ||    
T  21279976 cccatgtattagggatattttggtaaattcatctcaca--accacactttatcttctatttgtgtggggtccaagttgccacgtgtcagaattttgtgtg 21280073  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactctt 150  Q
    ||||||||||||||||||||||||   ||||||||| |||||||||||||    
T  21280074 ggtgtaaagggtatattgccacatggggtggtacatgtatcatcactctt 21280123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 4 - 150
Target Start/End: Complemental strand, 9698383 - 9698239
Alignment:
Q  4 atgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggt 103  Q
    |||||||| ||||||||||| |||||||||||||   ||||||||||||||| ||||| | |||| |||| |||||||||| ||||||||||||||||||    
T  9698383 atgtattagggatattttggtaagttcatctcaca--accacactttatcttctatttgtgtggggtccagattgccacgtgtcagaattttgtatgggt 9698286  T
Q  104 gtaaagggtatattgccacatttagtggtacatctatcatcactctt 150  Q
    ||||||||| |||||||||||   ||||||||| |||||| ||||||    
T  9698285 gtaaagggtgtattgccacatgaggtggtacatgtatcattactctt 9698239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 2 - 148
Target Start/End: Complemental strand, 24204039 - 24203895
Alignment:
Q  2 ccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgg 101  Q
    |||||||||| ||||||||||| |||||||||||||   |||||||||||| || ||||| | |||| ||||| ||||||||| |||||||||||| |||    
T  24204039 ccatgtattagggatattttggtaagttcatctcaca--accacactttatattctatttgtgtggggtccaagttgccacgtgtcagaattttgtgtgg 24203942  T
Q  102 gtgtaaagggtatattgccacatttagtggtacatctatcatcactc 148  Q
     |||||||||| ||||| |||||  |||||||||| |||||||||||    
T  24203941 atgtaaagggtgtattgtcacatggagtggtacatgtatcatcactc 24203895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 30014390 - 30014541
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||||||||| | ||||||||| |||||||||||||   |||| |||||||||| |||||||||||| ||||| || |||||| |||||||||||| ||    
T  30014390 cccatgtattaggcatattttggtaagttcatctcaca--accatactttatcttctatttatatggggtccaagttaccacgtgtcagaattttgtgtg 30014487  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactctttttt 154  Q
    | |||||||||| |||||||||||   ||| ||||| |||||||||| ||||||    
T  30014488 gatgtaaagggtgtattgccacatggggtgatacatgtatcatcactttttttt 30014541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 21293730 - 21293584
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||||||||| ||||||||||| || ||||| ||||   ||||||||||||||| ||||||| |||| |||| |||||||||| |||||||||| | ||    
T  21293730 cccatgtattaaggatattttggtaaattcatttcaca--accacactttatcttctatttatgtggggtccagattgccacgtgtcagaattttatgtg 21293633  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactct 149  Q
    |||||||||||| |||||||||||   ||||||||| ||||| ||||||    
T  21293632 ggtgtaaagggtgtattgccacatgaggtggtacatgtatcaccactct 21293584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 13743274 - 13743130
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||||||||| ||||||||||| |||||||||||||   ||||||||||||||| ||||| | |||| ||||  ||||||||| ||||||| |||| ||    
T  13743274 cccatgtattagggatattttggtaagttcatctcaca--accacactttatcttctatttgtgtggggtccaggttgccacgtgtcagaatcttgtgtg 13743177  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcact 147  Q
    |||||||||| |||||||||||||   ||||||||| ||||| ||||    
T  13743176 ggtgtaaaggatatattgccacatagggtggtacatgtatcaccact 13743130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 13748774 - 13748630
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||||||||| ||||||||||| |||||||||||||   ||||||||||||||| ||||| | |||| ||||  ||||||||| ||||||| |||| ||    
T  13748774 cccatgtattagggatattttggtaagttcatctcaca--accacactttatcttctatttgtgtggggtccaggttgccacgtgtcagaatcttgtgtg 13748677  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcact 147  Q
    |||||||||| |||||||||||||   ||||||||| ||||| ||||    
T  13748676 ggtgtaaaggatatattgccacatagggtggtacatgtatcaccact 13748630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 3213447 - 3213594
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||||||||| ||||||||||| || ||||| ||||   |||| |||||||||| ||||||| |||| |||| |||||||||| |||||||||| | ||    
T  3213447 cccatgtattaaggatattttggtaaattcatttcaca--accatactttatcttctatttatgtggggtccagattgccacgtgtcagaattttatgtg 3213544  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactctt 150  Q
    |||||||||||| |||||||||||   ||||||||| ||||| |||||||    
T  3213545 ggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactctt 3213594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 7273388 - 7273241
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    |||||||||||  |||||||||| |||||||||||||   | ||||||||||||| ||||||| |||| ||||| ||||||||| |||||||||||| ||    
T  7273388 cccatgtattagagatattttggtaagttcatctcaca--atcacactttatcttctatttatgtggggtccaagttgccacgtgtcagaattttgtgtg 7273291  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactctt 150  Q
    ||||||||| || |||| ||||||   |||||||||  ||||||||||||    
T  7273290 ggtgtaaagagtgtattaccacatggggtggtacatgcatcatcactctt 7273241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 3 - 152
Target Start/End: Complemental strand, 26670060 - 26669913
Alignment:
Q  3 catgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatggg 102  Q
    ||||||||| ||||||||||| |||||||||||||   ||||||||||||||| ||||| | |||  ||||  ||||||||| |||||||||||| ||||    
T  26670060 catgtattagggatattttggtaagttcatctcaca--accacactttatcttctatttgtgtggagtccaggttgccacgtgtcagaattttgtgtggg 26669963  T
Q  103 tgtaaagggtatattgccacatttagtggtacatctatcatcactctttt 152  Q
    |||||||||| |||||||||||   ||||||||| ||||| | |||||||    
T  26669962 tgtaaagggtgtattgccacatgaggtggtacatatatcaccgctctttt 26669913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 2 - 150
Target Start/End: Original strand, 26466847 - 26466993
Alignment:
Q  2 ccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgg 101  Q
    |||||||||| || |||||||| |||||||||||||   ||||||||||||||| ||||| | |||| | ||  |||||||||||||| |||||||||||    
T  26466847 ccatgtattagggttattttggtaagttcatctcaca--accacactttatcttctatttgtttggggttcaggttgccacgtatcaggattttgtatgg 26466944  T
Q  102 gtgtaaagggtatattgccacatttagtggtacatctatcatcactctt 150  Q
    ||||||| ||| |||||||||||   |||||| || |||||||||||||    
T  26466945 gtgtaaaaggtgtattgccacatagggtggtaaatgtatcatcactctt 26466993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 142
Target Start/End: Original strand, 7292797 - 7292933
Alignment:
Q  4 atgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggt 103  Q
    |||||||| ||||||||||| |||||||||||||   ||||||||||||||| ||||| | |||| ||||  ||||||||| |||||||||||| || ||    
T  7292797 atgtattagggatattttggtaagttcatctcaca--accacactttatcttctatttgtgtggggtccaggttgccacgtgtcagaattttgtttgtgt 7292894  T
Q  104 gtaaagggtatattgccacatttagtggtacatctatca 142  Q
    ||||||||| |||||||||||   ||||||||| |||||    
T  7292895 gtaaagggtgtattgccacatggggtggtacatgtatca 7292933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 3 - 148
Target Start/End: Original strand, 30736031 - 30736174
Alignment:
Q  3 catgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatggg 102  Q
    |||||||||  |||||||||| |||||||||||||   | ||||||||||||| ||||||| |||| ||||  ||||||||| |||||||||||| |||     
T  30736031 catgtattagtgatattttggtaagttcatctcaca--atcacactttatcttctatttatgtggggtccaggttgccacgtgtcagaattttgtgtgga 30736128  T
Q  103 tgtaaagggtatattgccacatttagtggtacatctatcatcactc 148  Q
    |||||||||| |||||||||||    |||||||| |||||||||||    
T  30736129 tgtaaagggtgtattgccacatgggatggtacatgtatcatcactc 30736174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 9e-37; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 43490451 - 43490304
Alignment:
Q  4 atgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggt 103  Q
    |||||||| ||||||||||| ||||||||||||    ||||||||||||||| ||||||| |||| |||| |||||||||| ||||||||||||||||||    
T  43490451 atgtattagggatattttggtaagttcatctcata--accacactttatcttctatttatgtggggtccagattgccacgtgtcagaattttgtatgggt 43490354  T
Q  104 gtaaagggtatattgccacatttagtggtacatctatcatcactcttttt 153  Q
    ||||||||| |||||||||||   ||||||||| || |||||||||||||    
T  43490353 gtaaagggtgtattgccacatgaggtggtacatgtagcatcactcttttt 43490304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 4 - 151
Target Start/End: Original strand, 19047207 - 19047352
Alignment:
Q  4 atgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggt 103  Q
    |||||||| ||||||||||| |||||||||||||   ||||||||||||||| ||||| | |||| |||| |||||||||| ||| ||||||||||||||    
T  19047207 atgtattagggatattttggtaagttcatctcaca--accacactttatcttctatttgtgtggggtccagattgccacgtgtcaaaattttgtatgggt 19047304  T
Q  104 gtaaagggtatattgccacatttagtggtacatctatcatcactcttt 151  Q
    ||||||||| |||||||||||   ||||||||| ||||||||||||||    
T  19047305 gtaaagggtgtattgccacatggggtggtacatgtatcatcactcttt 19047352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 43335816 - 43335671
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||||||||| ||||||||||| |||||||||||||   || |||||||||||| ||||||| |||||||||  ||||||||| |||||||||||| ||    
T  43335816 cccatgtattagggatattttggtaagttcatctcaca--actacactttatcttctatttatgtgggatccaggttgccacgtgtcagaattttgtgtg 43335719  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactc 148  Q
    | |||||| |||||||||||||||   ||||||||| |||||||||||    
T  43335718 gatgtaaaaggtatattgccacatggggtggtacatgtatcatcactc 43335671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 30838679 - 30838826
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||||||||| ||||||||||| |||||||||||||   ||||||||||||||| ||||| | |||| ||||  ||||||||| |||||||||||| |     
T  30838679 cccatgtattagggatattttggtaagttcatctcaca--accacactttatcttctatttgtgtggggtccaggttgccacgtgtcagaattttgtgta 30838776  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactctt 150  Q
    |||||||| ||| |||||||||||   ||||||||| |||||||||||||    
T  30838777 ggtgtaaaaggtgtattgccacatggggtggtacatgtatcatcactctt 30838826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 42849911 - 42849768
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||||||||| ||||||||||  |||||||||||||   |||||||||||| || ||||| | |||| ||||| ||||||||| |||||||||||| ||    
T  42849911 cccatgtattagggatattttgataagttcatctcaca--accacactttat-ttctatttgtgtggggtccaagttgccacgtgtcagaattttgtgtg 42849815  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcact 147  Q
    |||||||||||| |||||||||||   ||||||||| ||||||||||    
T  42849814 ggtgtaaagggtgtattgccacatggggtggtacatgtatcatcact 42849768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 4 - 148
Target Start/End: Original strand, 1750464 - 1750606
Alignment:
Q  4 atgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggt 103  Q
    |||||||| ||||||||| | |||||||||||||   ||||||||||||||| ||||| | |||| |||| |||||||||| |||||||||||| || ||    
T  1750464 atgtattagggatatttttgtaagttcatctcaca--accacactttatcttctatttgtgtggggtccagattgccacgtgtcagaattttgtgtgagt 1750561  T
Q  104 gtaaagggtatattgccacatttagtggtacatctatcatcactc 148  Q
    ||||||||| | |||||||||   ||||||||  |||||||||||    
T  1750562 gtaaagggtgtgttgccacatggggtggtacaaatatcatcactc 1750606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 4764779 - 4764633
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||||||||||  ||||||||| || ||||||||||   ||||||||||||||| ||||| | |||| ||||  ||||||||| |||||||||||| ||    
T  4764779 cccatgtattataaatattttggtaaattcatctcaca--accacactttatcttctatttgtgtggggtccaggttgccacgtgtcagaattttgtgtg 4764682  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactct 149  Q
    | |||||| ||| |||||||||||   ||||||||| ||||||||||||    
T  4764681 gatgtaaaaggtgtattgccacatgaggtggtacatgtatcatcactct 4764633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 16096794 - 16096940
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatggga-tccaaattgccacgtatcagaattttgtat 99  Q
    ||||||||||| |||||||||||  |||| |||||||   ||||||||||||||| || |||| ||||  || || ||||||||| |||||||||||| |    
T  16096794 cccatgtattagggatattttggtgagttaatctcaca--accacactttatcttctacttatgtgggggtctaagttgccacgtgtcagaattttgtgt 16096891  T
Q  100 gggtgtaaagggtatattgccacatttagtggtacatctatcatcactc 148  Q
    ||||||||||||| |||||||||||   ||||||||| |||||||||||    
T  16096892 gggtgtaaagggtgtattgccacatgatgtggtacatgtatcatcactc 16096940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 149
Target Start/End: Complemental strand, 12302303 - 12302160
Alignment:
Q  4 atgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggt 103  Q
    |||||||| ||||||||| | |||||||||||||   ||||||||||||||| ||||||| |||| ||||  || ||| || |||||||||||| ||| |    
T  12302303 atgtattagggatatttttgtaagttcatctcaca--accacactttatcttctatttatgtggggtccaggttaccatgtgtcagaattttgtgtggat 12302206  T
Q  104 gtaaagggtatattgccacatttagtggtacatctatcatcactct 149  Q
    ||||||| | |||||||||||   ||| ||||| ||||||| ||||    
T  12302205 gtaaaggatgtattgccacatggggtgatacatgtatcatcgctct 12302160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 149
Target Start/End: Complemental strand, 39149342 - 39149201
Alignment:
Q  4 atgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggt 103  Q
    ||||||||  |||||||||| ||||||||| |||   || |||||||||||||||||| | |||| || ||||| |||||| ||| |||||||| |||||    
T  39149342 atgtattagagatattttggtaagttcatcccaca--actacactttatcttttatttgtgtggg-tctaaattaccacgtctcataattttgtgtgggt 39149246  T
Q  104 gtaaagggtatattgccacatttagtggtacatctatcatcactct 149  Q
    ||||| ||| |||| ||||||   ||||||||| ||||||||||||    
T  39149245 gtaaaaggtgtattaccacatgg-gtggtacatgtatcatcactct 39149201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 34817813 - 34817681
Alignment:
Q  17 attttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggtgtaaagggtatat 116  Q
    ||||||| || ||||||||||   |||||||||| |||| ||||| || ||||||||  ||||||| | |||||||||||||||||||||| |||   ||    
T  34817813 attttggtaaattcatctcaca--accacactttctcttctatttgtacgggatccaggttgccacatgtcagaattttgtatgggtgtaaggggagcat 34817716  T
Q  117 tgccacatttagtggtacatctatcatcactcttt 151  Q
    ||||||||   |  |||||| ||||||||||||||    
T  34817715 tgccacatgggggtgtacatgtatcatcactcttt 34817681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 13780781 - 13780679
Alignment:
Q  8 attatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggtgtaa 107  Q
    |||| ||||||||||  || ||||||||||   |||||||||| |||| ||||||| |||| ||||  ||||||| | |||||||||||||| |||||||    
T  13780781 attagggatattttgataaattcatctcaca--accacactttctcttctatttatgtggggtccaggttgccacatgtcagaattttgtataggtgtaa 13780684  T
Q  108 agggt 112  Q
    |||||    
T  13780683 agggt 13780679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 29739406 - 29739358
Alignment:
Q  102 gtgtaaagggtatattgccacatttagtggtacatctatcatcactctt 150  Q
    ||||||||||||||||||||||| |  |||||||| |||||| ||||||    
T  29739406 gtgtaaagggtatattgccacatatgatggtacatgtatcattactctt 29739358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 4 - 151
Target Start/End: Original strand, 112705 - 112850
Alignment:
Q  4 atgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggt 103  Q
    |||||||| ||||||||||| |||||||||||||   ||||||||||||||| ||||| | |||| |||| |||||||||| ||| ||||||||||||||    
T  112705 atgtattagggatattttggtaagttcatctcaca--accacactttatcttctatttgtgtggggtccagattgccacgtgtcaaaattttgtatgggt 112802  T
Q  104 gtaaagggtatattgccacatttagtggtacatctatcatcactcttt 151  Q
    ||||||||| |||||||||||   ||||||||| ||||||||||||||    
T  112803 gtaaagggtgtattgccacatggggtggtacatgtatcatcactcttt 112850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 4 - 151
Target Start/End: Complemental strand, 42394469 - 42394324
Alignment:
Q  4 atgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggt 103  Q
    |||||||| ||||||||||| |||||||||||||   ||||||||||||||| ||||| | |||| |||| |||||||||| ||| ||||||||||||||    
T  42394469 atgtattagggatattttggtaagttcatctcaca--accacactttatcttctatttgtgtggggtccagattgccacgtgtcaaaattttgtatgggt 42394372  T
Q  104 gtaaagggtatattgccacatttagtggtacatctatcatcactcttt 151  Q
    ||||||||| |||||||||||   ||||||||| ||||||||||||||    
T  42394371 gtaaagggtgtattgccacatggggtggtacatgtatcatcactcttt 42394324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 4 - 148
Target Start/End: Original strand, 54237146 - 54237288
Alignment:
Q  4 atgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggt 103  Q
    |||||||| ||||||||||| |||||||||||||   ||||||||||||||| ||||| | |||| |||| |||||||||| ||||||| ||||||||||    
T  54237146 atgtattagggatattttggtaagttcatctcaca--accacactttatcttctatttgtgtggggtccagattgccacgtgtcagaatattgtatgggt 54237243  T
Q  104 gtaaagggtatattgccacatttagtggtacatctatcatcactc 148  Q
    ||||||||| |||||||||||   ||||||||| |||||||||||    
T  54237244 gtaaagggtgtattgccacatggggtggtacatgtatcatcactc 54237288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 46941100 - 46941246
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||||||||| ||||||||||| |||||||||||||   ||||||||||||||| ||||| | |||| ||||| ||||||||| |||||||||| | ||    
T  46941100 cccatgtattagggatattttggtaagttcatctcaca--accacactttatcttctatttgtgtggggtccaagttgccacgtgtcagaattttatgtg 46941197  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactct 149  Q
    ||||||||| || |||||||||||   ||||||||| ||||||||||||    
T  46941198 ggtgtaaagagtgtattgccacatggggtggtacatgtatcatcactct 46941246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 4 - 148
Target Start/End: Complemental strand, 24688452 - 24688310
Alignment:
Q  4 atgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggt 103  Q
    |||||||| ||||||||||| |||||||||||||   ||||||||||||||| ||||||| |||| ||||  ||||||||| |||||||||||| ||||     
T  24688452 atgtattagggatattttggtaagttcatctcaca--accacactttatcttctatttatgtggggtccaggttgccacgtgtcagaattttgtgtgggg 24688355  T
Q  104 gtaaagggtatattgccacatttagtggtacatctatcatcactc 148  Q
    ||||| ||| |||||||||||   ||||||||| |||||||||||    
T  24688354 gtaaatggtgtattgccacatggggtggtacatgtatcatcactc 24688310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 40808912 - 40809057
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||||||||| ||||||||||| |||||||||||||   ||||||||||||||| ||||| | |||| ||||  ||||||||| |||||||||||| ||    
T  40808912 cccatgtattagggatattttggtaagttcatctcaca--accacactttatcttctatttgtgtggggtccaggttgccacgtgtcagaattttgtgtg 40809009  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactc 148  Q
    | |||||| ||| |||||||||||   ||||||||| |||||||||||    
T  40809010 gatgtaaaaggtgtattgccacatggggtggtacatgtatcatcactc 40809057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 47191079 - 47190931
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    |||||||||||  |||||||||  |||||||||||||   ||||||||||||||| ||||| | |||| ||||| || |||| | |||||||||||| ||    
T  47191079 cccatgtattagagatattttgataagttcatctcaca--accacactttatcttctatttgtgtggggtccaagttaccacatgtcagaattttgtgtg 47190982  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactcttt 151  Q
    |||||||||||| |||||||||||  | |||||||| ||||||||||||||    
T  47190981 ggtgtaaagggtgtattgccacatggaatggtacatgtatcatcactcttt 47190931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 4 - 149
Target Start/End: Original strand, 52629878 - 52630021
Alignment:
Q  4 atgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggt 103  Q
    |||||||| ||||||||| | |||||||||||||   ||||||||||||||| ||||||| | || ||||  |||| |||| |||||||||||| |||||    
T  52629878 atgtattaaggatatttttgtaagttcatctcaca--accacactttatcttctatttatgtagggtccaggttgctacgtgtcagaattttgtgtgggt 52629975  T
Q  104 gtaaagggtatattgccacatttagtggtacatctatcatcactct 149  Q
    ||||||||| |||||||||||   ||||||||| ||||||||||||    
T  52629976 gtaaagggtgtattgccacatggggtggtacatgtatcatcactct 52630021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 4 - 148
Target Start/End: Complemental strand, 53581908 - 53581766
Alignment:
Q  4 atgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggt 103  Q
    |||||||| ||||||||||  |||||||||||||   ||||||||||||||| ||||| | |||| ||||  ||||||||| |||||||||||| |||||    
T  53581908 atgtattagggatattttgataagttcatctcaca--accacactttatcttctatttgtgtggggtccaggttgccacgtgtcagaattttgtgtgggt 53581811  T
Q  104 gtaaagggtatattgccacatttagtggtacatctatcatcactc 148  Q
    ||||||||| |||||||||||   ||||||||  |||||||||||    
T  53581810 gtaaagggtgtattgccacatagggtggtacaggtatcatcactc 53581766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 45126981 - 45126836
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||||||||| ||||||||||| |||||||||||||   |||||||||||| || ||||||| |||| |||| ||| |||| |  ||||||||| | ||    
T  45126981 cccatgtattagggatattttggtaagttcatctcaca--accacactttattttctatttatgtggggtccagattaccacatgccagaattttatgtg 45126884  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactc 148  Q
    |||||||||||| |||||||||||  |||||||||| ||||| |||||    
T  45126883 ggtgtaaagggtgtattgccacatggagtggtacatgtatcaccactc 45126836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 4 - 148
Target Start/End: Original strand, 40480799 - 40480941
Alignment:
Q  4 atgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggt 103  Q
    |||||||| ||||||||||| |||||||||||||   ||||||||||||||| ||||| | | || ||||  ||||||||| |||||||||||| |||||    
T  40480799 atgtattagggatattttggtaagttcatctcaca--accacactttatcttctatttgtgtagggtccaggttgccacgtgtcagaattttgtgtgggt 40480896  T
Q  104 gtaaagggtatattgccacatttagtggtacatctatcatcactc 148  Q
    ||||||||| ||||||| |||   ||| ||||| |||||||||||    
T  40480897 gtaaagggtgtattgccgcatggggtgatacatgtatcatcactc 40480941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 4 - 151
Target Start/End: Original strand, 36150180 - 36150325
Alignment:
Q  4 atgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggt 103  Q
    |||||| | ||||||||||| |||||||||||||   ||||||||||||||| ||||| | |||  ||||  ||||||||| |||||||||||| ||| |    
T  36150180 atgtatcagggatattttggtaagttcatctcaca--accacactttatcttctatttgtgtggagtccaggttgccacgtgtcagaattttgtgtggat 36150277  T
Q  104 gtaaagggtatattgccacatttagtggtacatctatcatcactcttt 151  Q
    ||||||||| |||||||||||   ||||||||| ||||| ||||||||    
T  36150278 gtaaagggtgtattgccacatggggtggtacatgtatcaccactcttt 36150325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 53273737 - 53273634
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||||||||| ||||||||||| |||||||||||||   |||| |||||||||||||||||| |||||||||  || ||||||||||||||||||| |     
T  53273737 cccatgtattagggatattttggtaagttcatctcaca--accatactttatcttttatttatgtgggatccaggttaccacgtatcagaattttgtgta 53273640  T
Q  101 ggtgta 106  Q
    ||||||    
T  53273639 ggtgta 53273634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 42100735 - 42100880
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||||||||| ||||||||||| |||||||||||||   |||||| |||||||||||||| | |||  | ||  ||||||||| |||||||||| | ||    
T  42100735 cccatgtattagggatattttggtaagttcatctcaca--accacattttatcttttatttgtgtggagttcaggttgccacgtgtcagaattttatgtg 42100832  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactc 148  Q
    ||||||||||||  ||||||||||   ||||||||| ||| |||||||    
T  42100833 ggtgtaaagggtgcattgccacatgaggtggtacatgtatgatcactc 42100880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 4 - 149
Target Start/End: Original strand, 25413731 - 25413874
Alignment:
Q  4 atgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggt 103  Q
    |||||||| ||||||||| | |||||||||||||   ||||||||||||||| ||||| | |||| ||||  || |||||| ||||| |||||| |||||    
T  25413731 atgtattagggatatttttgtaagttcatctcaca--accacactttatcttctatttgtgtggggtccaggttaccacgtgtcagagttttgtgtgggt 25413828  T
Q  104 gtaaagggtatattgccacatttagtggtacatctatcatcactct 149  Q
    ||||||||| ||||| || ||   ||||||||| ||||||||||||    
T  25413829 gtaaagggtgtattgtcatatggggtggtacatgtatcatcactct 25413874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 150
Target Start/End: Complemental strand, 54246198 - 54246054
Alignment:
Q  4 atgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggt 103  Q
    ||||||||  |||||||| | |||||||||||||   ||||||||||||||| ||||| | |||| ||||  ||||||| | |||||||||| | |||||    
T  54246198 atgtattagagatatttttgtaagttcatctcaca--accacactttatcttctatttgtgtggggtccaggttgccacatgtcagaattttatgtgggt 54246101  T
Q  104 gtaaagggtatattgccacatttagtggtacatctatcatcactctt 150  Q
    ||||||  | |||||||||||   ||||||||| |||||||||||||    
T  54246100 gtaaagaatgtattgccacatggggtggtacatgtatcatcactctt 54246054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 76 - 150
Target Start/End: Original strand, 1078338 - 1078412
Alignment:
Q  76 ttgccacgtatcagaattttgtatgggtgtaaagggtatattgccacatttagtggtacatctatcatcactctt 150  Q
    ||||||||| |||||||||||| ||| |||||||||| |||||||||||   ||||||||| |||||||||||||    
T  1078338 ttgccacgtgtcagaattttgtgtggatgtaaagggtgtattgccacatgaggtggtacatgtatcatcactctt 1078412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 3 - 100
Target Start/End: Original strand, 51249357 - 51249452
Alignment:
Q  3 catgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    |||| |||| ||||||||||| || ||||||||||   |||||||||| |||| ||||| | ||||||||| |||||||| | |||||||||||||||    
T  51249357 catgcattaaggatattttggtaaattcatctcaca--accacactttctcttctatttgtgtgggatccagattgccacatgtcagaattttgtatg 51249452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 29556924 - 29556864
Alignment:
Q  91 attttgtatgggtgtaaagggtatattgccacatttagtggtacatctatcatcactcttt 151  Q
    ||||| ||||||||||||  || ||||||||||| ||||||||||| ||||| ||||||||    
T  29556924 attttatatgggtgtaaattgtgtattgccacatgtagtggtacatgtatcaccactcttt 29556864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 106
Target Start/End: Original strand, 27748613 - 27748713
Alignment:
Q  4 atgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggt 103  Q
    |||||||| ||||||||||| ||||||||||||  | || | |||||||||| ||||| | |||| ||||  ||||||| | |||||||||||| | |||    
T  27748613 atgtattagggatattttggtaagttcatctca--caacaatactttatcttctatttgtgtggggtccaggttgccacatgtcagaattttgtgtcggt 27748710  T
Q  104 gta 106  Q
    |||    
T  27748711 gta 27748713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 3 - 148
Target Start/End: Original strand, 2547045 - 2547188
Alignment:
Q  3 catgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatggg 102  Q
    ||||||||| ||||||||| | |||||||||||||   ||||||||||||||| ||||| | |||||||||| ||||||||| |||||||||||| ||||    
T  2547045 catgtattagggatattttagtaagttcatctcaca--accacactttatcttctatttgtgtgggatccaagttgccacgtgtcagaattttgtgtggg 2547142  T
Q  103 tgtaaagggtatattgccacatttagtggtacatctatcatcactc 148  Q
    |||||||||| |||||||||||   ||||||||| |||||||||||    
T  2547143 tgtaaagggtgtattgccacatagggtggtacatgtatcatcactc 2547188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 4 - 149
Target Start/End: Original strand, 11582816 - 11582959
Alignment:
Q  4 atgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggt 103  Q
    |||||||| ||||||||||| |||||||||||||   ||||||||||||||| ||||| | |||| |||| |||||||||| ||||||||||||||||||    
T  11582816 atgtattagggatattttggtaagttcatctcaca--accacactttatcttctatttgtgtggggtccagattgccacgtgtcagaattttgtatgggt 11582913  T
Q  104 gtaaagggtatattgccacatttagtggtacatctatcatcactct 149  Q
    ||||||||| |||||||||||   ||||||||| |||||| |||||    
T  11582914 gtaaagggtgtattgccacatgaggtggtacatgtatcattactct 11582959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 4 - 149
Target Start/End: Complemental strand, 36743533 - 36743390
Alignment:
Q  4 atgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggt 103  Q
    |||||||| ||||||||||| |||||||||||||   ||||||||||||||| ||||| | |||| |||| |||||||||| ||||||||||||||||||    
T  36743533 atgtattagggatattttggtaagttcatctcaca--accacactttatcttctatttgtgtggggtccagattgccacgtgtcagaattttgtatgggt 36743436  T
Q  104 gtaaagggtatattgccacatttagtggtacatctatcatcactct 149  Q
    ||||| ||| |||||||||||   ||||||||| ||||||||||||    
T  36743435 gtaaatggtgtattgccacatggggtggtacatgtatcatcactct 36743390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 7 - 152
Target Start/End: Original strand, 20148813 - 20148956
Alignment:
Q  7 tattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggtgta 106  Q
    ||||| ||||||||||| |||||||||||||   ||||||||||||| | ||||||| ||||||||| |||||||||| |||||||||| | ||||||||    
T  20148813 tattagggatattttggtaagttcatctcaca--accacactttatcatctatttatgtgggatccagattgccacgtgtcagaattttatgtgggtgta 20148910  T
Q  107 aagggtatattgccacatttagtggtacatctatcatcactctttt 152  Q
    |||||| |||||||||||   ||||||||| ||||| |||||||||    
T  20148911 aagggtgtattgccacatggtgtggtacatgtatcaccactctttt 20148956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 4 - 147
Target Start/End: Complemental strand, 42197485 - 42197344
Alignment:
Q  4 atgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggt 103  Q
    |||||||| ||||||||||| |||||||||||||   ||||||||||||||| ||||| | |||| |||| |||||||||| ||| |||||||| |||||    
T  42197485 atgtattagggatattttggtaagttcatctcaca--accacactttatcttctatttgtgtggggtccagattgccacgtgtcaaaattttgtgtgggt 42197388  T
Q  104 gtaaagggtatattgccacatttagtggtacatctatcatcact 147  Q
    ||||||||| |||||||||||   ||||||||| ||||||||||    
T  42197387 gtaaagggtgtattgccacatggggtggtacatgtatcatcact 42197344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 2 - 148
Target Start/End: Original strand, 42295243 - 42295386
Alignment:
Q  2 ccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgg 101  Q
    |||||||||| ||||||||||| |||||||||||||   ||||||||||||||| ||||||| |||| ||||| ||||||| | |||||||||||| |||    
T  42295243 ccatgtattagggatattttggtaagttcatctcaca--accacactttatcttctatttatgtggg-tccaagttgccacatgtcagaattttgtgtgg 42295339  T
Q  102 gtgtaaagggtatattgccacatttagtggtacatctatcatcactc 148  Q
     ||||||||||||||||||||||    |||||||| |||||||||||    
T  42295340 atgtaaagggtatattgccacataggatggtacatttatcatcactc 42295386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 5754950 - 5755067
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||| ||||| ||||||||||| |||||||||||||   ||||||||||||||| ||||||| |||||||||| ||||||||| | |||||||||| ||    
T  5754950 cccatatattagggatattttggtaagttcatctcaca--accacactttatcttctatttatgtgggatccaagttgccacgtgttagaattttgtgtg 5755047  T
Q  101 ggtgtaaagggtatattgcc 120  Q
    |||||||||||| |||||||    
T  5755048 ggtgtaaagggtgtattgcc 5755067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 29705409 - 29705549
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||||||||| ||||||||||  |||||||||||||   ||||||||||||||| ||||| |  ||| ||||| ||||||||| |||||||||||| ||    
T  29705409 cccatgtattagggatattttgataagttcatctcaca--accacactttatcttctatttgtgcggggtccaagttgccacgtgtcagaattttgtgtg 29705506  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcat 143  Q
    |||||||||||| |||||||||||   ||||||||| ||||||    
T  29705507 ggtgtaaagggtgtattgccacatggggtggtacatgtatcat 29705549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 29801003 - 29800864
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||||||||| ||||||||||| |||||||||||||   ||||||||||||||| ||||||| |||| || | |||||||| | |||||||||| | ||    
T  29801003 cccatgtattagggatattttggtaagttcatctcaca--accacactttatcttctatttatgtggggtcaagattgccacatgtcagaattttatgtg 29800906  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatca 142  Q
    |||||||||||| |||||||||||   ||||||||| |||||    
T  29800905 ggtgtaaagggtgtattgccacatggggtggtacatgtatca 29800864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 4 - 147
Target Start/End: Original strand, 26125685 - 26125825
Alignment:
Q  4 atgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggt 103  Q
    |||||||| ||||||||||| |||||||||||||   ||||||||||||||| ||||||| |||| |||| |||||||||| |||||||||| |  ||||    
T  26125685 atgtattagggatattttggtaagttcatctcaca--accacactttatcttctatttatgtggg-tccagattgccacgtgtcagaattttatgcgggt 26125781  T
Q  104 gtaaagggtatattgccacatttagtggtacatctatcatcact 147  Q
    ||||||||| |||||||||||   ||||||||| ||||| ||||    
T  26125782 gtaaagggtgtattgccacatggggtggtacatatatcaccact 26125825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 31384711 - 31384856
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||||||||| | ||||||||| |||||||||||||   ||||||||||||||| ||||| | |||| ||||  |||| |||| |||||||||| | ||    
T  31384711 cccatgtattaggaatattttggtaagttcatctcaca--accacactttatcttctatttgtgtggggtccaggttgctacgtgtcagaattttatgtg 31384808  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactc 148  Q
    | ||||||||||||||||||||||   ||||||||| |||||||||||    
T  31384809 gatgtaaagggtatattgccacatggggtggtacatatatcatcactc 31384856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 7 - 148
Target Start/End: Original strand, 9241605 - 9241744
Alignment:
Q  7 tattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggtgta 106  Q
    ||||| ||||||||| | |||||||||||||   ||||||||||||||| ||||||| |||| ||||  ||||||||| |||||||||||| |||||| |    
T  9241605 tattagggatatttttgtaagttcatctcaca--accacactttatcttctatttatgtggggtccaggttgccacgtgtcagaattttgtgtgggtgca 9241702  T
Q  107 aagggtatattgccacatttagtggtacatctatcatcactc 148  Q
    |||||| | |||||||||   ||||||||| |||||||||||    
T  9241703 aagggtgtgttgccacatggggtggtacatgtatcatcactc 9241744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 4 - 149
Target Start/End: Original strand, 45397366 - 45397508
Alignment:
Q  4 atgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggt 103  Q
    |||||||| ||||||||| | |||||||||||||   |||||| |||||||| ||||| | |||| |||| |||||||||| |||||||||||| |||||    
T  45397366 atgtattagggatatttttgtaagttcatctcaca--accacaatttatcttctatttgtgtgggctccagattgccacgtgtcagaattttgtgtgggt 45397463  T
Q  104 gtaaagggtatattgccacatttagtggtacatctatcatcactct 149  Q
    ||||||||| | |||||||| |  ||||||||| ||||||||||||    
T  45397464 gtaaagggtgtgttgccaca-tgggtggtacatgtatcatcactct 45397508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 3 - 154
Target Start/End: Complemental strand, 30912613 - 30912464
Alignment:
Q  3 catgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatggg 102  Q
    ||||||||| || |||||||| |||||||||||||   ||| ||| ||||||| ||||| | |||| || |  ||||||||| |||||||||||| ||||    
T  30912613 catgtattaggggtattttggtaagttcatctcaca--accgcaccttatcttctatttgtgtggggtctaggttgccacgtgtcagaattttgtgtggg 30912516  T
Q  103 tgtaaagggtatattgccacatttagtggtacatctatcatcactctttttt 154  Q
    ||||||| || |||||||||||   ||||||||| |||||||||||||||||    
T  30912515 tgtaaagagtgtattgccacatggggtggtacatgtatcatcactctttttt 30912464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 3743818 - 3743963
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||| ||||| | ||||||||  |||||||||||||   ||||||||||||||| ||||||| | || | || |||||||||| |||||||||| | ||    
T  3743818 cccatatattaagtatattttgataagttcatctcaca--accacactttatcttctatttatgtagggttcagattgccacgtgtcagaattttatgtg 3743915  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactc 148  Q
    |||||||||||| |||||| ||||   ||||||||| |||||||||||    
T  3743916 ggtgtaaagggtgtattgctacatggggtggtacatatatcatcactc 3743963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 150
Target Start/End: Complemental strand, 30660792 - 30660648
Alignment:
Q  4 atgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggt 103  Q
    |||||||| ||||||||||| |||||||||| ||   ||||||||||||||| ||||| | |||| ||||  ||||||||| |||||||||| | ||| |    
T  30660792 atgtattagggatattttggtaagttcatcttaca--accacactttatcttctatttgtgtggggtccaggttgccacgtgtcagaattttatgtggat 30660695  T
Q  104 gtaaagggtatattgccacatttagtggtacatctatcatcactctt 150  Q
    ||||||||| |||||||||||    || ||||| |||||||||||||    
T  30660694 gtaaagggtgtattgccacataggatgatacatgtatcatcactctt 30660648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 2166016 - 2165895
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    |||||||||||  |||||||||| ||||||||||||    ||||||||||||||| ||||| | |||| | ||  ||||||||| |||||||||||| ||    
T  2166016 cccatgtattagagatattttggtaagttcatctcata--accacactttatcttctatttgtgtggggttcaggttgccacgtgtcagaattttgtgtg 2165919  T
Q  101 ggtgtaaagggtatattgccacat 124  Q
    |||||||||||| ||||| |||||    
T  2165918 ggtgtaaagggtgtattgtcacat 2165895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 1375589 - 1375737
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||| ||||| ||||||||||| || || |||||||   || |||||||||||| ||||| | |||  | || |||||||||| | ||||| |||| ||    
T  1375589 cccatatattagggatattttggtaaatttatctcaca--actacactttatcttctatttgtgtggagttcagattgccacgtgttagaatcttgtgtg 1375686  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactcttt 151  Q
    |||||||||  | ||||| |||||   ||||||||| ||||| ||||||||    
T  1375687 ggtgtaaagaatgtattgtcacatagggtggtacatgtatcaccactcttt 1375737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 4 - 149
Target Start/End: Complemental strand, 24001062 - 24000919
Alignment:
Q  4 atgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggt 103  Q
    |||||||| ||||||||||| |||||||||||||   ||||||||||||||| ||||| | |||| |||| |||||||||| ||||||||||||||||||    
T  24001062 atgtattagggatattttggtaagttcatctcaca--accacactttatcttctatttgtgtggggtccagattgccacgtgtcagaattttgtatgggt 24000965  T
Q  104 gtaaagggtatattgccacatttagtggtacatctatcatcactct 149  Q
    ||||||||| |||||||||||   ||||||||| |||||| |||||    
T  24000964 gtaaagggtgtattgccacatgaggtggtacatgtatcattactct 24000919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 4 - 148
Target Start/End: Complemental strand, 42538481 - 42538339
Alignment:
Q  4 atgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggt 103  Q
    |||||||| ||||||||||| |||||||||||||   ||||||||||||||| ||||| | |||| |||| |||||||||| ||||||||||||||||||    
T  42538481 atgtattagggatattttggtaagttcatctcaca--accacactttatcttctatttgtgtggggtccagattgccacgtgtcagaattttgtatgggt 42538384  T
Q  104 gtaaagggtatattgccacatttagtggtacatctatcatcactc 148  Q
    ||||||||| |||||||||||   ||||||||| |||||| ||||    
T  42538383 gtaaagggtgtattgccacatgaggtggtacatgtatcattactc 42538339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 7 - 152
Target Start/End: Original strand, 44326231 - 44326374
Alignment:
Q  7 tattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggtgta 106  Q
    ||||| ||||||||||| |||||||||||||   ||||||||||||| | ||||||| ||||||||| |||||||||| |||||||||| | ||||||||    
T  44326231 tattagggatattttggtaagttcatctcaca--accacactttatcatctatttatgtgggatccagattgccacgtgtcagaattttatgtgggtgta 44326328  T
Q  107 aagggtatattgccacatttagtggtacatctatcatcactctttt 152  Q
    |||||| |||||||||||   ||||||||| ||||| |||||||||    
T  44326329 aagggtgtattgccacatggtgtggtacatgtatcaccactctttt 44326374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 7 - 154
Target Start/End: Complemental strand, 5810971 - 5810826
Alignment:
Q  7 tattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggtgta 106  Q
    ||||| ||||||||||  |||||||||||||   ||||||||||||||| ||||| | |||| ||||| ||||||| | ||| |||||||||||||||||    
T  5810971 tattagggatattttgataagttcatctcaca--accacactttatcttctatttgtgtggggtccaagttgccacatgtcaaaattttgtatgggtgta 5810874  T
Q  107 aagggtatattgccacatttagtggtacatctatcatcactctttttt 154  Q
    |||||| |||||||||||   ||||||||| |||||||||||||||||    
T  5810873 aagggtgtattgccacatggggtggtacatgtatcatcactctttttt 5810826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 32029870 - 32029725
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||||||||| ||||||||||| || ||||||| ||   ||||||||||||||| ||||||| |||| ||||| ||||||||| |||||||||||| ||    
T  32029870 cccatgtattagggatattttggtaaattcatctaaca--accacactttatcttctatttatgtggggtccaagttgccacgtgtcagaattttgtgtg 32029773  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactc 148  Q
    |||||||||||| |||||||||||   ||||||||| |||||| ||||    
T  32029772 ggtgtaaagggtgtattgccacatggggtggtacatgtatcatgactc 32029725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 14 - 148
Target Start/End: Original strand, 41861736 - 41861868
Alignment:
Q  14 gatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggtgtaaagggta 113  Q
    |||||||||| ||||| |||||||   ||||||||||||||| ||||| |||||| ||||  ||||||||| |||||||||||||||||||||||||||     
T  41861736 gatattttggtaagtttatctcaca--accacactttatcttctatttgtatggggtccaggttgccacgtgtcagaattttgtatgggtgtaaagggtg 41861833  T
Q  114 tattgccacatttagtggtacatctatcatcactc 148  Q
    |||||||||||  |||||||||| ||||| |||||    
T  41861834 tattgccacatggagtggtacatgtatcaccactc 41861868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 3 - 152
Target Start/End: Original strand, 35069770 - 35069917
Alignment:
Q  3 catgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatggg 102  Q
    ||||||||| ||||||||||| |||||||||||||   ||||||||||||||| ||||||| || | ||||| ||||||||| |||||||||||| | |     
T  35069770 catgtattagggatattttggtaagttcatctcaca--accacactttatcttctatttatgtgaggtccaagttgccacgtgtcagaattttgtgtaga 35069867  T
Q  103 tgtaaagggtatattgccacatttagtggtacatctatcatcactctttt 152  Q
    |||||||| |||||||||||||    |||||||| |||||||||||||||    
T  35069868 tgtaaaggatatattgccacataggatggtacatgtatcatcactctttt 35069917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 44416987 - 44416841
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||||||||| ||||||||||  |||||||||||||   ||||||||||||||| ||||| | |||| ||||| ||||||||| |||||| ||||| ||    
T  44416987 cccatgtattagggatattttgataagttcatctcaca--accacactttatcttctatttgtgtggggtccaagttgccacgtgtcagaaatttgtgtg 44416890  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactct 149  Q
    | |||||| ||| |||||||||||   ||||||||| ||||||||||||    
T  44416889 gatgtaaaaggtgtattgccacatgaggtggtacatgtatcatcactct 44416841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 3 - 142
Target Start/End: Original strand, 5015444 - 5015581
Alignment:
Q  3 catgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatggg 102  Q
    ||||||||| ||||||||||| |||||||||||||   ||||||||||||||| ||||| | |||| ||||| ||||||||| |||||||||||| || |    
T  5015444 catgtattagggatattttggtaagttcatctcaca--accacactttatcttctatttgtgtggggtccaagttgccacgtgtcagaattttgtgtgag 5015541  T
Q  103 tgtaaagggtatattgccacatttagtggtacatctatca 142  Q
    |||||| ||| |||||||||||   ||||||||| |||||    
T  5015542 tgtaaaaggtgtattgccacatggggtggtacatgtatca 5015581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 43343677 - 43343532
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||||||||| ||||||||||  |||||||||||||   ||||||||||||||| ||||| | |||| ||||| ||||||||| |||||| ||||| ||    
T  43343677 cccatgtattagggatattttgataagttcatctcaca--accacactttatcttctatttgtgtggggtccaagttgccacgtgtcagaaatttgtgtg 43343580  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactc 148  Q
    | |||||| ||| |||||||||||   ||||||||| |||||||||||    
T  43343579 gatgtaaaaggtgtattgccacatgaggtggtacatgtatcatcactc 43343532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 3 - 124
Target Start/End: Original strand, 42972901 - 42973020
Alignment:
Q  3 catgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatggg 102  Q
    ||||||||| ||||||||||| |||||||||||||   |||||| |||||||| ||||| | |||| ||||| ||||||||| |||||||||||| ||||    
T  42972901 catgtattagggatattttggtaagttcatctcaca--accacattttatcttctatttgtgtggggtccaagttgccacgtgtcagaattttgtgtggg 42972998  T
Q  103 tgtaaagggtatattgccacat 124  Q
    |||||| ||| |||||||||||    
T  42972999 tgtaaatggtgtattgccacat 42973020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 10573796 - 10573941
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||||||||| | ||||||||| || ||||||||||   ||||||||||||||| ||||||| |||| || | |||||||| |||||||||||| | ||    
T  10573796 cccatgtattaggaatattttggtaaattcatctcaca--accacactttatcttctatttatgtggggtcaagattgccacatatcagaattttatgtg 10573893  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactc 148  Q
    |||||||||| ||||||| |||||   ||||||||| ||||| |||||    
T  10573894 ggtgtaaaggatatattgtcacatgcggtggtacatgtatcaccactc 10573941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 38160632 - 38160511
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||||||||| ||||||||| | || ||||||||||   || |||||||||||| ||||||| |||| ||||| ||||||||| |||||||||||| ||    
T  38160632 cccatgtattagggatattttagtaacttcatctcaca--actacactttatcttctatttatgtggggtccaagttgccacgtgtcagaattttgtgtg 38160535  T
Q  101 ggtgtaaagggtatattgccacat 124  Q
    ||||||| |||| |||||||||||    
T  38160534 ggtgtaaggggtgtattgccacat 38160511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 16180410 - 16180262
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    |||| |||||||  ||||||||| || ||||||||||   ||||||||||||||| ||||| | |||| ||||  ||||||||| |||||||||||| ||    
T  16180410 cccacgtattataaatattttggtaaattcatctcaca--accacactttatcttctatttgtgtggggtccaggttgccacgtgtcagaattttgtgtg 16180313  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactcttt 151  Q
    | |||||| ||| |||||||||||   ||||||||| ||||||||||||||    
T  16180312 gatgtaaaaggtgtattgccacatggggtggtacatgtatcatcactcttt 16180262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 4 - 145
Target Start/End: Complemental strand, 27393310 - 27393171
Alignment:
Q  4 atgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggt 103  Q
    |||||||| ||||||||| | |||||||||||||   ||||||||||||||| ||||||| |||| ||||  ||||| | | |||||||||| | |||||    
T  27393310 atgtattagggatatttttgtaagttcatctcaca--accacactttatcttctatttatgtggggtccaggttgcctcatgtcagaattttatgtgggt 27393213  T
Q  104 gtaaagggtatattgccacatttagtggtacatctatcatca 145  Q
    ||||||| | |||||||||||   ||||||||| ||||||||    
T  27393212 gtaaaggatgtattgccacatggggtggtacatgtatcatca 27393171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 4638252 - 4638100
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||| ||||||||||||||||| ||||||||||||  | |||| |||||||||| ||||| | |||| || |  || |||||| ||||||| |||||||    
T  4638252 cccatatattatggatattttggtaagttcatctca--caaccatactttatcttctatttgtgtggggtctaggttaccacgtgtcagaatcttgtatg 4638155  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactcttttttc 155  Q
    | |||||||||| ||||| ||| |   ||||||||| ||||| |||||| |||||    
T  4638154 gatgtaaagggtgtattgtcacgtagggtggtacatgtatcaccactctgttttc 4638100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 45326067 - 45326214
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||| ||||| ||||||||||| |||||||||||||   | ||||||||||||| ||||||| |||| |||| | | |||| | |||||||||| | ||    
T  45326067 cccatatattagggatattttggtaagttcatctcaca--atcacactttatcttctatttatgtggggtccagactaccacctgtcagaattttatgtg 45326164  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactctt 150  Q
    |||||||| ||| ||||| |||||   ||||||||| ||||| |||||||    
T  45326165 ggtgtaaatggtgtattgtcacatggggtggtacatgtatcaccactctt 45326214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 2 - 124
Target Start/End: Complemental strand, 26898454 - 26898334
Alignment:
Q  2 ccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgg 101  Q
    |||||||||| ||||||||||| |||||||||| ||   |||||||||||| || ||||| | |||| ||||  || |||||| |||||||||| | |||    
T  26898454 ccatgtattagggatattttggtaagttcatcttaca--accacactttatattctatttgtgtggggtccaggttaccacgtgtcagaattttatgtgg 26898357  T
Q  102 gtgtaaagggtatattgccacat 124  Q
    ||||||| ||| |||||||||||    
T  26898356 gtgtaaaaggtgtattgccacat 26898334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 41 - 152
Target Start/End: Complemental strand, 47279739 - 47279628
Alignment:
Q  41 accacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggtgtaaagggtatattgccacatttagtggtacatctat 140  Q
    ||||||||||||||| ||||||||| ||||||| ||| |||| |||||||||||| | ||||| |||||||| ||||| || ||    |||||||| |||    
T  47279739 accacactttatcttctatttatataggatccagattaccacatatcagaattttatgtgggtataaagggtgtattgtcagatgggatggtacatgtat 47279640  T
Q  141 catcactctttt 152  Q
    || |||||||||    
T  47279639 caccactctttt 47279628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 9216348 - 9216495
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    |||||| ||||  |||||||||| ||||||||||||  | |||||| |||||||| ||||| | |||| |  || ||||| | | |||||||||||| ||    
T  9216348 cccatgcattagagatattttggtaagttcatctca--caaccacattttatcttctatttgtgtggggtttaagttgccgcatgtcagaattttgtgtg 9216445  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactctt 150  Q
    | |||||| ||| ||||| |||||   |||||| || ||||||| |||||    
T  9216446 gatgtaaaaggtgtattgtcacatggggtggtatatatatcatccctctt 9216495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 43317562 - 43317610
Alignment:
Q  75 attgccacgtatcagaattttgtatgggtgtaaagggtatattgccaca 123  Q
    |||||||| | |||||||||||| ||||||||| |||| ||||||||||    
T  43317562 attgccacatgtcagaattttgtgtgggtgtaaggggtgtattgccaca 43317610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 4 - 149
Target Start/End: Complemental strand, 2614699 - 2614556
Alignment:
Q  4 atgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggt 103  Q
    |||||||| ||||||||||| |||||||||||||   ||||||||||||||| ||||| | |||| |||| |||||||||| ||||||||||||||||||    
T  2614699 atgtattagggatattttggtaagttcatctcaca--accacactttatcttctatttgtgtggggtccagattgccacgtgtcagaattttgtatgggt 2614602  T
Q  104 gtaaagggtatattgccacatttagtggtacatctatcatcactct 149  Q
    ||||||||| |||||||||||   ||||||||| |||||| |||||    
T  2614601 gtaaagggtgtattgccacatgaggtggtacatgtatcattactct 2614556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 4 - 148
Target Start/End: Complemental strand, 41334713 - 41334571
Alignment:
Q  4 atgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggt 103  Q
    |||||||| ||||||||||| |||||||||||||   ||||||||||||||| ||||| | |||| ||||  ||||||||| ||||||||||||||||||    
T  41334713 atgtattagggatattttggtaagttcatctcaca--accacactttatcttctatttgtgtggggtccaggttgccacgtgtcagaattttgtatgggt 41334616  T
Q  104 gtaaagggtatattgccacatttagtggtacatctatcatcactc 148  Q
    ||||||||| |||||||||||   ||||||||| ||||| |||||    
T  41334615 gtaaagggtgtattgccacatggggtggtacatgtatcaccactc 41334571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 2 - 149
Target Start/End: Original strand, 33801517 - 33801662
Alignment:
Q  2 ccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgg 101  Q
    |||||||||| ||||||||| | |||||||||||||   ||||||||||||||| ||||| | |||||||||| ||||||||| |||||||||||| |||    
T  33801517 ccatgtattagggatattttagtaagttcatctcaca--accacactttatcttctatttgtgtgggatccaagttgccacgtgtcagaattttgtgtgg 33801614  T
Q  102 gtgtaaagggtatattgccacatttagtggtacatctatcatcactct 149  Q
    |||||||| || |||||||||||     ||||||| ||||||||||||    
T  33801615 gtgtaaagagtgtattgccacatgggaaggtacatatatcatcactct 33801662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 7617180 - 7617327
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||||||||| ||||||||||| |||||||||||||   ||||||||||||||| ||||||| ||||||| || ||| ||| | |||||||||||| |     
T  7617180 cccatgtattagggatattttggtaagttcatctcaca--accacactttatcttctatttatgtgggatctaagttgtcacatgtcagaattttgtgtt 7617277  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactctt 150  Q
    |||||||| ||| |||||||||||   ||| ||||| |||||||||||||    
T  7617278 ggtgtaaaaggtgtattgccacatggggtgatacatgtatcatcactctt 7617327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 2 - 123
Target Start/End: Original strand, 22512353 - 22512472
Alignment:
Q  2 ccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgg 101  Q
    |||||||||| ||||||||||| |||||||||||||   ||||||||||||||| ||||| | |||| ||||| ||||||||| |||||||||||| |||    
T  22512353 ccatgtattagggatattttggtaagttcatctcaca--accacactttatcttctatttgtgtggggtccaagttgccacgtgtcagaattttgtgtgg 22512450  T
Q  102 gtgtaaagggtatattgccaca 123  Q
     |||||||||| ||||||||||    
T  22512451 atgtaaagggtgtattgccaca 22512472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 5257042 - 5257188
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||||||||| ||||||||||| || ||||||||||   ||||||||||||||| ||||||| |||| || | |||||||| | |||||||||| | ||    
T  5257042 cccatgtattagggatattttggtaatttcatctcaca--accacactttatcttctatttatgtggggtcaagattgccacatgtcagaattttatgtg 5257139  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactct 149  Q
    |||||||||||| |||||||||||   ||||||||| ||||| ||||||    
T  5257140 ggtgtaaagggtgtattgccacatggggtggtacatgtatcaccactct 5257188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 4 - 148
Target Start/End: Original strand, 18034032 - 18034174
Alignment:
Q  4 atgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggt 103  Q
    |||||||| ||||||||| | |||||||||||||   ||||||||||||||| ||||| | |||| ||||  ||||||||| |||||||||| |||||||    
T  18034032 atgtattagggatatttttgtaagttcatctcaca--accacactttatcttctatttgtgtggggtccaggttgccacgtgtcagaattttatatgggt 18034129  T
Q  104 gtaaagggtatattgccacatttagtggtacatctatcatcactc 148  Q
    ||||||||| |||||||| ||   ||||||||| |||||||||||    
T  18034130 gtaaagggtgtattgccatatggggtggtacatgtatcatcactc 18034174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 38470626 - 38470765
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||||||||| ||||||||||| || ||||| ||||   | ||||||||||||| ||||||| |||| |||| ||| ||||||||||||||||| | ||    
T  38470626 cccatgtattaaggatattttggtaaattcatttcaca--atcacactttatcttctatttatgtggggtccagattaccacgtatcagaattttatgtg 38470723  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatca 142  Q
    |||||||||||| |||||||| ||   ||||||||| |||||    
T  38470724 ggtgtaaagggtgtattgccatatgaggtggtacatgtatca 38470765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 150
Target Start/End: Complemental strand, 25915002 - 25914902
Alignment:
Q  50 tatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggtgtaaagggtatattgccacatttagtggtacatctatcatcactct 149  Q
    |||||| ||||| | |||| ||||  ||||||||| |||||||||||| |||||||||| ||| |||||||||||   ||||||||| ||||||||||||    
T  25915002 tatcttctatttgtgtggggtccaggttgccacgtgtcagaattttgtgtgggtgtaaatggtgtattgccacatgaggtggtacatgtatcatcactct 25914903  T
Q  150 t 150  Q
    |    
T  25914902 t 25914902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 7447872 - 7448023
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    |||||||||||  |||||||||  |||||||||||||   ||||||||||||||| ||||| | |||| ||||| ||||||||| |||||||||||| ||    
T  7447872 cccatgtattacagatattttgataagttcatctcaca--accacactttatcttctatttgtgtggggtccaagttgccacgtgtcagaattttgtgtg 7447969  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactctttttt 154  Q
    |||||||||||| |||||||||||  | |||||||| |||||||||||||||||    
T  7447970 ggtgtaaagggtgtattgccacatggaatggtacatgtatcatcactctttttt 7448023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 43571139 - 43570994
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||||||||| ||||||||||| |||||||||||||   ||||||||||||||| ||||| | |||| ||||| ||||||||| |||||||||| | ||    
T  43571139 cccatgtattagggatattttggtaagttcatctcaca--accacactttatcttctatttgtgtggggtccaagttgccacgtgtcagaattttatgtg 43571042  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactc 148  Q
    |||||||||||| |||||||||||   ||||||||| |||||||||||    
T  43571041 ggtgtaaagggtgtattgccacatggggtggtacatatatcatcactc 43570994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 3 - 154
Target Start/End: Complemental strand, 48499013 - 48498864
Alignment:
Q  3 catgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatggg 102  Q
    ||||||||| ||||||||||| |||||||||||||   ||||||||||||||| ||||| | |||| ||||| ||||||||| |||||||||| | ||||    
T  48499013 catgtattagggatattttggtaagttcatctcaca--accacactttatcttctatttgtgtggggtccaagttgccacgtgtcagaattttatgtggg 48498916  T
Q  103 tgtaaagggtatattgccacatttagtggtacatctatcatcactctttttt 154  Q
    |||||||||| |||||||||||   ||||||||| ||||||||||| |||||    
T  48498915 tgtaaagggtgtattgccacatggggtggtacatgtatcatcactcattttt 48498864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 4401375 - 4401521
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    |||||||||||  |||||||||| |||||||||||||   ||||||||||||||| ||||| | |||| |||||  |||||||| |||||||||||| ||    
T  4401375 cccatgtattagagatattttggtaagttcatctcaca--accacactttatcttctatttgtgtggggtccaatatgccacgtgtcagaattttgtgtg 4401472  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactct 149  Q
    |||||||||||| |||||||||||   ||||||||| ||||||||||||    
T  4401473 ggtgtaaagggtgtattgccacatagggtggtacatgtatcatcactct 4401521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 4 - 148
Target Start/End: Original strand, 5489826 - 5489968
Alignment:
Q  4 atgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggt 103  Q
    |||||||| ||||||||||| |||||||||||||   ||||||||||||||| ||||| | |||| ||||| ||||||||| |||||||||| | |||||    
T  5489826 atgtattagggatattttggtaagttcatctcaca--accacactttatcttctatttgtgtggggtccaagttgccacgtgtcagaattttatgtgggt 5489923  T
Q  104 gtaaagggtatattgccacatttagtggtacatctatcatcactc 148  Q
    ||||||||| |||||||||||   ||||||||| |||||||||||    
T  5489924 gtaaagggtgtattgccacatggggtggtacatgtatcatcactc 5489968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 37814825 - 37814969
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||||||||| ||||||||||| || ||||| ||||   ||||||||||||||| ||||||| |||| |||| |||||||||| |||||||||| ||||    
T  37814825 cccatgtattaaggatattttggtaaattcatttcaca--accacactttatcttctatttatgtggggtccagattgccacgtgtcagaattttatatg 37814922  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcact 147  Q
    | |||||||||| |||||||||||   ||||||||| ||||| ||||    
T  37814923 gatgtaaagggtgtattgccacatggggtggtacatgtatcaccact 37814969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 24769552 - 24769405
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||||||||| ||||||||||| |||||| | ||||   ||||||||||||||| ||||| | |||| ||||| ||||||||| |||||||||||| ||    
T  24769552 cccatgtattagggatattttggtaagttcttatcaca--accacactttatcttctatttgtgtggggtccaagttgccacgtgtcagaattttgtgtg 24769455  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactctt 150  Q
    | ||||||| || |||||||||||   ||||||||| |||||||||||||    
T  24769454 gatgtaaagagtgtattgccacatggggtggtacatgtatcatcactctt 24769405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 2497615 - 2497469
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||| ||||| ||||||||||| |||||||||||||   ||||||||||||| | ||||||| ||||||||| |||| ||||| |||||||||| | ||    
T  2497615 cccatatattaaggatattttggtaagttcatctcaca--accacactttatcatctatttatgtgggatccagattgtcacgtgtcagaattttatgtg 2497518  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactct 149  Q
    ||| |||||||| |||||||||||   ||||||||| ||||| ||||||    
T  2497517 ggtataaagggtgtattgccacatggtgtggtacatgtatcaccactct 2497469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 4888090 - 4888235
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||||||||| ||||||||||| ||||| |||||||   |||||||||||| || ||||| | |||  |||||||||||| ||||||||||||||| ||    
T  4888090 cccatgtattagggatattttggtaagtttatctcaca--accacactttattttctatttgtgtggtgtccaaattgccatgtatcagaattttgtgtg 4888187  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactct 149  Q
    | |||||||| |||||||||||| |  ||||||||| ||||||||||||    
T  4888188 gatgtaaaggatatattgccaca-tgggtggtacatgtatcatcactct 4888235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 4 - 149
Target Start/End: Complemental strand, 50448310 - 50448167
Alignment:
Q  4 atgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggt 103  Q
    |||||||| ||||||||| | |||||||||| ||   |||||| |||||||| ||||| | |||| ||||  ||||||||| |||||||||||| |||||    
T  50448310 atgtattagggatatttttgtaagttcatcttaca--accacattttatcttctatttttgtgggttccatgttgccacgtgtcagaattttgtgtgggt 50448213  T
Q  104 gtaaagggtatattgccacatttagtggtacatctatcatcactct 149  Q
    ||||||||| |||||||||||   ||||||||| ||||||||||||    
T  50448212 gtaaagggtgtattgccacatggggtggtacatgtatcatcactct 50448167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 750358 - 750209
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||||||| | ||||||||||  || |||||||||    ||||||||||||||| ||||| | |||| ||||  || |||||| |||||||||||| ||    
T  750358 cccatgtatcagggatattttgataaattcatctcaaa--accacactttatcttctatttgtgtggggtccatgttaccacgtgtcagaattttgtgtg 750261  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactctttt 152  Q
    |||||||||||| |||||||||||    |||||||| |||||||||||||||    
T  750260 ggtgtaaagggtgtattgccacatgggatggtacatgtatcatcactctttt 750209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 4 - 148
Target Start/End: Complemental strand, 23989573 - 23989431
Alignment:
Q  4 atgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggt 103  Q
    |||||||| ||||||||||| || || |||||||   ||||||||||||||| ||||| | |||| ||||  ||||||| | ||||||| |||| |||||    
T  23989573 atgtattagggatattttggtaaatttatctcaca--accacactttatcttctatttgtgtggggtccaggttgccacatgtcagaatcttgtgtgggt 23989476  T
Q  104 gtaaagggtatattgccacatttagtggtacatctatcatcactc 148  Q
    ||||||||| |||||||| ||   ||||||||| ||||| |||||    
T  23989475 gtaaagggtgtattgccatatagggtggtacatgtatcaccactc 23989431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 3 - 152
Target Start/End: Original strand, 734 - 881
Alignment:
Q  3 catgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatggg 102  Q
    ||||||||| ||||||||||| |||||||||||||   ||||||||||||||| ||||| | |||  ||||  ||||||||| |||||||||||| ||||    
T  734 catgtattagggatattttggtaagttcatctcaca--accacactttatcttctatttgtgtggagtccaggttgccacgtgtcagaattttgtgtggg 831  T
Q  103 tgtaaagggtatattgccacatttagtggtacatctatcatcactctttt 152  Q
    |||||||||| |||||||||||   ||||||||| ||||| | |||||||    
T  832 tgtaaagggtgtattgccacatgaggtggtacatatatcaccgctctttt 881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 4 - 148
Target Start/End: Complemental strand, 14238 - 14097
Alignment:
Q  4 atgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggt 103  Q
    |||||||| ||||||||| | |||||||||||||   ||||||||||||||| ||||| | |||| ||||  ||||||||| |||||||||||| ||| |    
T  14238 atgtattagggatatttttgtaagttcatctcaca--accacactttatcttctatttgtgtggg-tccaggttgccacgtgtcagaattttgtgtggat 14142  T
Q  104 gtaaagggtatattgccacatttagtggtacatctatcatcactc 148  Q
    ||||||||| |||||||||||   ||||||||| |||||||||||    
T  14141 gtaaagggtgtattgccacatggggtggtacatgtatcatcactc 14097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 4 - 148
Target Start/End: Complemental strand, 24566 - 24425
Alignment:
Q  4 atgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatgggt 103  Q
    |||||||| ||||||||| | |||||||||||||   ||||||||||||||| ||||| | |||| ||||  ||||||||| |||||||||||| ||| |    
T  24566 atgtattagggatatttttgtaagttcatctcaca--accacactttatcttctatttgtgtggg-tccaggttgccacgtgtcagaattttgtgtggat 24470  T
Q  104 gtaaagggtatattgccacatttagtggtacatctatcatcactc 148  Q
    ||||||||| |||||||||||   ||||||||| |||||||||||    
T  24469 gtaaagggtgtattgccacatggggtggtacatgtatcatcactc 24425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 11298 - 11443
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    ||||| ||||| ||||||||||| |||||||||||||   ||||||||||||||| |||| || |||| ||||| |||| |||| |||||||||||| |     
T  11298 cccatatattagggatattttggtaagttcatctcaca--accacactttatcttctattgatgtggggtccaagttgctacgtgtcagaattttgtgta 11395  T
Q  101 ggtgtaaagggtatattgccacatttagtggtacatctatcatcactc 148  Q
    ||||||||  || |||||||||||    |||||||| |||||||||||    
T  11396 ggtgtaaatagtgtattgccacatgggatggtacatgtatcatcactc 11443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 23474 - 23369
Alignment:
Q  1 cccatgtattatggatattttggaaagttcatctcactcgaccacactttatcttttatttatatgggatccaaattgccacgtatcagaattttgtatg 100  Q
    |||||||||||  |||||||||| |||||||||| ||   | ||||||||||||| ||||| | || | | ||| ||||||||| | |||||||||| ||    
T  23474 cccatgtattagagatattttggtaagttcatcttaca--atcacactttatcttctatttgtgtgaggttcaatttgccacgtgttagaattttgtgtg 23377  T
Q  101 ggtgtaaa 108  Q
    ||||||||    
T  23376 ggtgtaaa 23369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University