View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14096_high_1 (Length: 2096)

Name: NF14096_high_1
Description: NF14096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14096_high_1
NF14096_high_1
[»] chr6 (44 HSPs)
chr6 (1421-1938)||(31564316-31564843)
chr6 (655-944)||(31565162-31565451)
chr6 (348-613)||(31565454-31565719)
chr6 (1076-1362)||(31564838-31565117)
chr6 (1009-1273)||(33414524-33414788)
chr6 (158-321)||(31565718-31565883)
chr6 (19-161)||(31565922-31566064)
chr6 (778-944)||(33414293-33414459)
chr6 (1276-1642)||(33385314-33385670)
chr6 (1276-1642)||(33259583-33259959)
chr6 (1009-1248)||(33269497-33269740)
chr6 (1009-1273)||(33395008-33395274)
chr6 (1046-1273)||(33258187-33258416)
chr6 (788-944)||(33383760-33383916)
chr6 (1009-1180)||(33383981-33384156)
chr6 (1679-1843)||(33416366-33416536)
chr6 (1276-1468)||(33416152-33416345)
chr6 (788-919)||(33351400-33351530)
chr6 (1103-1275)||(33278972-33279139)
chr6 (1276-1461)||(24631975-24632161)
chr6 (834-944)||(33292802-33292912)
chr6 (505-616)||(33413910-33414021)
chr6 (1169-1273)||(33293090-33293194)
chr6 (802-905)||(33258067-33258170)
chr6 (1020-1110)||(33292988-33293078)
chr6 (606-762)||(33414090-33414254)
chr6 (868-940)||(33269355-33269427)
chr6 (1320-1502)||(9165228-9165418)
chr6 (534-616)||(33351038-33351120)
chr6 (1800-1929)||(33385707-33385837)
chr6 (636-774)||(33351212-33351363)
chr6 (1106-1230)||(33280358-33280482)
chr6 (1513-1619)||(24631864-24631970)
chr6 (1431-1505)||(29274300-29274376)
chr6 (1855-1914)||(33281320-33281376)
chr6 (878-918)||(31567428-31567468)
chr6 (1227-1273)||(28873045-28873091)
chr6 (431-481)||(33413817-33413867)
chr6 (1872-1926)||(33416538-33416592)
chr6 (1855-1914)||(33301947-33302003)
chr6 (1536-1611)||(281808-281881)
chr6 (1321-1362)||(33282241-33282282)
chr6 (1321-1362)||(33398042-33398083)
chr6 (1321-1362)||(33408952-33408993)
[»] chr2 (13 HSPs)
chr2 (1052-1273)||(17447760-17447982)
chr2 (778-944)||(17445747-17445910)
chr2 (684-760)||(17445951-17446026)
chr2 (542-616)||(17446159-17446233)
chr2 (1797-1926)||(17443374-17443503)
chr2 (1009-1081)||(17445607-17445679)
chr2 (1577-1642)||(17443537-17443602)
chr2 (1424-1505)||(34339039-34339122)
chr2 (1432-1472)||(3102617-3102657)
chr2 (430-494)||(17446284-17446348)
chr2 (1537-1614)||(14299588-14299663)
chr2 (2012-2050)||(26328079-26328117)
chr2 (1444-1505)||(7103554-7103615)
[»] chr7 (17 HSPs)
chr7 (1941-2075)||(35958658-35958792)
chr7 (1941-2075)||(35978113-35978247)
chr7 (1941-2075)||(35999525-35999659)
chr7 (1947-2073)||(36216894-36217020)
chr7 (1977-2073)||(35947455-35947551)
chr7 (1947-2018)||(35930964-35931035)
chr7 (1980-2073)||(36226562-36226655)
chr7 (2015-2075)||(35926397-35926457)
chr7 (1985-2069)||(36220925-36221009)
chr7 (1963-2074)||(35973980-35974091)
chr7 (1963-2074)||(35995392-35995503)
chr7 (1499-1612)||(3468614-3468725)
chr7 (1424-1505)||(3610811-3610894)
chr7 (1432-1553)||(26935573-26935696)
chr7 (1390-1468)||(22388014-22388093)
chr7 (1974-2048)||(35982708-35982782)
chr7 (1974-2048)||(36004120-36004194)
[»] scaffold0428 (8 HSPs)
scaffold0428 (1046-1273)||(2308-2537)
scaffold0428 (1406-1642)||(3802-4047)
scaffold0428 (1103-1275)||(15114-15281)
scaffold0428 (802-905)||(2188-2291)
scaffold0428 (1106-1230)||(13771-13895)
scaffold0428 (1276-1362)||(3704-3791)
scaffold0428 (1855-1914)||(12876-12932)
scaffold0428 (1321-1362)||(11970-12011)
[»] chr5 (7 HSPs)
chr5 (1680-1834)||(30653203-30653360)
chr5 (1431-1553)||(11684346-11684468)
chr5 (1507-1572)||(30653373-30653438)
chr5 (1424-1505)||(32059660-32059742)
chr5 (1424-1468)||(10391269-10391313)
chr5 (1561-1612)||(11457158-11457209)
chr5 (1424-1463)||(29115328-29115367)
[»] chr8 (8 HSPs)
chr8 (1536-1614)||(13000381-13000457)
chr8 (1429-1497)||(26717178-26717246)
chr8 (1433-1519)||(5290566-5290649)
chr8 (1424-1487)||(26716527-26716590)
chr8 (1536-1614)||(30191098-30191174)
chr8 (1471-1557)||(10079082-10079168)
chr8 (1508-1557)||(30389108-30389157)
chr8 (1431-1505)||(34788498-34788574)
[»] chr3 (6 HSPs)
chr3 (1536-1612)||(43115093-43115167)
chr3 (1424-1502)||(38462197-38462277)
chr3 (1431-1504)||(22232749-22232824)
chr3 (1415-1497)||(3015928-3016011)
chr3 (1536-1614)||(37273171-37273247)
chr3 (1539-1635)||(24624250-24624344)
[»] chr1 (2 HSPs)
chr1 (1434-1487)||(44207697-44207750)
chr1 (1563-1614)||(15581316-15581367)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1446-1519)||(21335-21410)
[»] chr4 (3 HSPs)
chr4 (1433-1487)||(32920489-32920543)
chr4 (1430-1497)||(47970240-47970309)
chr4 (1447-1517)||(55437345-55437415)


Alignment Details
Target: chr6 (Bit Score: 444; Significance: 0; HSPs: 44)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1421 - 1938
Target Start/End: Complemental strand, 31564843 - 31564316
Alignment:
Q  1421 aagataaacacttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataagctt 1520  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||| |||||||||||||||    
T  31564843 aagataaacacttatcataaaattgcatatgtataagctatttttataacaagataaaatgaagtcacactgttttcctacaagtgattttcataagctt 31564744  T
Q  1521 ttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatg 1620  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31564743 ttctagacaacatatggaaataagctgaaaacaacttttgtggacatgtcattagttgtttccattaactcttcgaaacagtctcacaagtgctaatatg 31564644  T
Q  1621 actgtataagttcaaatacatcaatccacaagaggcaaaacaatatgagaagatgggcaaaatggaagtataattcattttttctctttt------acat 1714  Q
    | |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||      ||||    
T  31564643 agtgtataagttcaaatatatcaatccacaagaggcaaaacaatatgaaaagatgggcaaaatggaagtataattaattttttctcttttacatttacat 31564544  T
Q  1715 gtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtagaaaaattagaatagaaac----agcaaataagatga 1810  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||    
T  31564543 gtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtagaaaaattagaatagaaacattaagcaaataagatga 31564444  T
Q  1811 aattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttc 1910  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31564443 aattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttc 31564344  T
Q  1911 ttcatcttcaacttgtactaccacaggt 1938  Q
    ||||||||||||||||||||||||||||    
T  31564343 ttcatcttcaacttgtactaccacaggt 31564316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 286; E-Value: 1e-159
Query Start/End: Original strand, 655 - 944
Target Start/End: Complemental strand, 31565451 - 31565162
Alignment:
Q  655 ttggcgtctaatcaacatttggttattatgatttctgttttcaaaattgatctcactctgttgtatacttcttcctatgaaaatgcaacaaatacttttc 754  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565451 ttggcgtctaatcaacatttggttattatgatttctgttttcaaaattgatctcactctgttgtatacttcttcctatgaaaatgcaacaaatacttttc 31565352  T
Q  755 ttgaaaactttttaagctataattgtttctccaagagtgaaccgaacaaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcacca 854  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31565351 ttgaaaactttttaagctataattgtttctccaagagtgaaccgaacaaaacgccgcacattaatgttctcgccaatggcagctatactttgcctcacca 31565252  T
Q  855 agtcttttactaaaacactgtcatccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattcttccctcaacaa 944  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565251 agtcttttactaaaacactgtcatccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattcttccctcaacaa 31565162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 254; E-Value: 1e-140
Query Start/End: Original strand, 348 - 613
Target Start/End: Complemental strand, 31565719 - 31565454
Alignment:
Q  348 aagagcttacaaaaggagccatttatccacttgcttacaatcaagctctatgaacacggaagcaaaactcatgttaccgagcaactttatcgcttccttt 447  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565719 aagagcttacaaaaggtgccatttatccacttgcttacaatcaagctctatgaacacggaagcaaaactcatgttaccgagcaactttatcgcttccttt 31565620  T
Q  448 aagctttcactttttagatatatgcataacttataaagtaaatttcacaatatttgtatactgtaatcaaagagtgtctatccttgaatagatcaatgat 547  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31565619 aagctttcactttttagatatatgcataacttatagagtaaatttcacaatatttgtatactgtaatcaaagagtggctatccttgaatagatcaatgat 31565520  T
Q  548 tgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaacaattcaga 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565519 tgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaacaattcaga 31565454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 1076 - 1362
Target Start/End: Complemental strand, 31565117 - 31564838
Alignment:
Q  1076 tgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgt 1175  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31565117 tgcattgcaagatcatgaaccaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgcgtgaatcgt 31565018  T
Q  1176 gaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttcatg 1275  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565017 gaatgtatgtaccgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttcatg 31564918  T
Q  1276 caagtgttggtgatatagttgctgcaattcaaaggggacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagata 1362  Q
     ||||||||||       |||||||||| ||||||||   ||||||||||||||||| || ||| |||||||||||||| |||||||    
T  31564917 taagtgttggt-------ttgctgcaatccaaagggggtggaatagacatttaaaaaatagaaatcttatgtaagaatttaaagata 31564838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 181; E-Value: 6e-97
Query Start/End: Original strand, 1009 - 1273
Target Start/End: Original strand, 33414524 - 33414788
Alignment:
Q  1009 cttcgtcacagtggttttaggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaat 1108  Q
    |||||||||| | ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  33414524 cttcgtcacaatagtttcgggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcattgcaagatcatcaaccaactccttgaat 33414623  T
Q  1109 ttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaactc 1208  Q
    ||||||||||| || | ||||||||||||||| ||||||||||||||||||| |||  ||| |||||||||||||||| ||||||||||||||||  ||     
T  33414624 ttctcacttctgccaacaaagtccgtttcacagttcacttcaattagaacaccaatacgtgcatcgtgaatgtatgtaccgattcttccttcagctgcta 33414723  T
Q  1209 gtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttca 1273  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  33414724 gtcttccggatttcttatcagcggatgagagaccctttttcctgagatatgcttgcgccttttca 33414788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 147; E-Value: 1e-76
Query Start/End: Original strand, 158 - 321
Target Start/End: Complemental strand, 31565883 - 31565718
Alignment:
Q  158 taaggggttgaggaaaagtaagggcactttcgtcatttcattcccaaagatgaagaaaaggtgccaataattgtgttattttttatacccataaattgaa 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31565883 taaggggttgaggaaaagtaagggcactttcgtcatttcattcccaaagatgaagaaaaggtgccaataattgtgttattttttatatccataaattgaa 31565784  T
Q  258 acattctaccatattcatta--acactcataattggcaccttctgtaagctctttatgaatatgaa 321  Q
    ||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||    
T  31565783 acattctaccatattcattaacacactcataattggcaccttttgtaagctctttatgaatatgaa 31565718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 143; E-Value: 3e-74
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 31566064 - 31565922
Alignment:
Q  19 aaaagagtggcagcaagtctttgagaaagcgctggaggaggtgagaaagtaacagaaacctcagaaagaaacagcttcagttgttgttggaatttatgat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31566064 aaaagagtggcagcaagtctttgagaaagcgctggaggaggtgagaaagtaacagaaacctcagaaagaaacagcttcagttgttgttggaatttatgat 31565965  T
Q  119 ggttatgggttttgaggttgaagagcaaaagaaagttgataag 161  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  31565964 ggttatgggttttgaggttgaagagcaaaagaaagttgataag 31565922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 127; E-Value: 1e-64
Query Start/End: Original strand, 778 - 944
Target Start/End: Original strand, 33414293 - 33414459
Alignment:
Q  778 tgtttctccaagagtgaaccgaacaaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtca 877  Q
    ||||||||| ||||||||||||||||||||||||||  |||||||||| ||||| ||||||||||||||||||||||||||||| |||| ||||||||||    
T  33414293 tgtttctccgagagtgaaccgaacaaaacgccgcactttaatgttctctccaatagcagctatactttgcctcaccaagtctttcactacaacactgtca 33414392  T
Q  878 tccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattcttccctcaacaa 944  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  33414393 tccttaataaaaggctgctctagaagagcaagctctcctaacctctttgagattcttccctcgacaa 33414459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 122; E-Value: 1e-61
Query Start/End: Original strand, 1276 - 1642
Target Start/End: Original strand, 33385314 - 33385670
Alignment:
Q  1276 caagtgttggtgatatagttgctgcaattcaaaggg-gacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggct 1374  Q
    |||||| ||||||||||||||||||||| ||||||| | | ||| ||||||||||  |||| ||| ||||||||||||||||||||||||||||||||||    
T  33385314 caagtgctggtgatatagttgctgcaatccaaagggcggcggaacagacatttaacgattagaaatcttatgtaagaattcaaagataggtgaacaggct 33385413  T
Q  1375 agaaaactaagacttagtttggataaataacctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaa-- 1472  Q
     |||| ||||||           |||| | |||||| ||| |||| ||||||| |||||  |||| || |||| |||||||||| ||||||||| |||      
T  33385414 ggaaacctaaga-----------taaacagcctaatgaaaacttataagataagcactttacatataagtgctgatgtataagcaatttttataacaaaa 33385502  T
Q  1473 gataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcat 1572  Q
    |||||||||||||||||||  | | |||||||| |||||||||||||||||||||||   || ||||| |||||||||||||||||| ||||||||||||    
T  33385503 gataaaatgaagtcatact--tatgctataagctattttcataagcttttctagacagtttatggaaaaaagctgaaaacaacttttatggacatgtcat 33385600  T
Q  1573 tggttgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatc 1642  Q
      | ||||||||| |||||||| ||||||| ||||||||||| |||| | |  |||||||||||| ||||    
T  33385601 gagctgtttccataaactcttccaaacagtttcacaagtgcttatatcagtagataagttcaaatgcatc 33385670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 120; E-Value: 1e-60
Query Start/End: Original strand, 1276 - 1642
Target Start/End: Original strand, 33259583 - 33259959
Alignment:
Q  1276 caagtgttggtgatatagttgctgcaattcaaaggg-gacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggct 1374  Q
    |||||| ||||||||||||||||||||| ||||||| | | ||| |||||||||| || || ||| |||||||||||||||||||||| || |  |||||    
T  33259583 caagtgctggtgatatagttgctgcaatccaaagggcggcggaacagacatttaacaactataaatcttatgtaagaattcaaagatatgtaagaaggct 33259682  T
Q  1375 agaaaactaagacttagtttggataaataacctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagc--aa 1472  Q
     |||| ||||||| | ||||||||||| | ||||||| ||||||| |||||||   |||  |||| || ||||||||||||||||||||||||| |  ||    
T  33259683 ggaaacctaagaccttgtttggataaacagcctaattcaagcttataagataagagctttacatataagtgcttatgtataagctatttttataacaaaa 33259782  T
Q  1473 gataaaatgaagtcatactgttttc-------ctataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggac 1565  Q
    |||||| ||||||||||||||||||       |||||||| ||||||||||||||||||| |||  ||| | |||   |||||||||| ||||| |||||    
T  33259783 gataaattgaagtcatactgttttcctatatgctataagctattttcataagcttttctatacagtatatgtaaaatggctgaaaacagcttttatggac 33259882  T
Q  1566 atgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatc 1642  Q
    |||||||| |  |||||||| |||||||| ||||||| |  |||||||| |||| | | ||||||||||||||||||    
T  33259883 atgtcattagccgtttccataaactcttccaaacagtttggcaagtgcttatatcaatatataagttcaaatacatc 33259959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 119; E-Value: 6e-60
Query Start/End: Original strand, 1009 - 1248
Target Start/End: Original strand, 33269497 - 33269740
Alignment:
Q  1009 cttcgtcacagtggttttaggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaat 1108  Q
    |||||||||| | ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||    
T  33269497 cttcgtcacaatagtttcgggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcattgcaagatcatcaaccaacttcttgaat 33269596  T
Q  1109 ttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatg----tatgtagcgattcttccttcagca 1204  Q
    ||||||||||| || | |||||| |||||||| |||||||||||||||||||  |||  || || |||||||    |||||| |||||||| |||||||     
T  33269597 ttctcacttctgccaacaaagtcggtttcacagttcacttcaattagaacaccgatgcatgcattgtgaatgtatatatgtaccgattctttcttcagct 33269696  T
Q  1205 actcgtcttccggatttcttgtcagcggatgagagacccttttt 1248  Q
     || ||||| | || ||||| |||||||||||||||||||||||    
T  33269697 gctagtcttgcagacttcttatcagcggatgagagacccttttt 33269740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 104; E-Value: 5e-51
Query Start/End: Original strand, 1009 - 1273
Target Start/End: Original strand, 33395008 - 33395274
Alignment:
Q  1009 cttcgtcacagtggttttaggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaat 1108  Q
    ||||||| || |||||| | ||||| |||||||||||||||||||||||||||||||||||||   |||||||| |||||||  ||| ||||||||||||    
T  33395008 cttcgtcgcaatggtttcaagaataccttcaatagatacaaactgaacctgtggacaagcagcctattgcattgaaagatcagcaaccaactccttgaat 33395107  T
Q  1109 ttctcacttcta--ccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaac 1206  Q
     | ||||||||   || | |||||| |||||||| ||||||||||| ||||||   ||| ||| ||||| ||||||| || ||||||||||||||||  |    
T  33395108 ctatcacttctgtgccaacaaagtcggtttcacagttcacttcaatcagaacatagatgcgtgcatcgtcaatgtatttaccgattcttccttcagctgc 33395207  T
Q  1207 tcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttca 1273  Q
    | | || ||||||||||||||||| ||||||||||||||| |||| ||||||| ||| |||||||||    
T  33395208 tagcctaccggatttcttgtcagctgatgagagaccctttgttctaaggtatgattgggccttttca 33395274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 102; E-Value: 8e-50
Query Start/End: Original strand, 1046 - 1273
Target Start/End: Original strand, 33258187 - 33258416
Alignment:
Q  1046 acaaactgaacctgtggac-aagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttc 1144  Q
    ||||||||||||||||||| ||  ||| ||||||||||||||||| | ||| |||||||| |||||||||||||| || | |||||| |||||||  |||    
T  33258187 acaaactgaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttc 33258286  T
Q  1145 acttcaattagaacactaatgtgtgaatcgtgaatg-tatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagaccc 1243  Q
    |||||||||||||||| ||||||||||||| || || |||||| |||||||||||||  |  || |||| ||||||||||| ||||||||||||||||||    
T  33258287 acttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccc 33258386  T
Q  1244 ttttttctgaggtatgcttgcgccttttca 1273  Q
    |||||  |||| |||||||||| |||||||    
T  33258387 tttttgatgagatatgcttgcggcttttca 33258416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 101; E-Value: 3e-49
Query Start/End: Original strand, 788 - 944
Target Start/End: Original strand, 33383760 - 33383916
Alignment:
Q  788 agagtgaaccgaacaaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatga 887  Q
    ||||||||||||||||||||||   |  |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  33383760 agagtgaaccgaacaaaacgcccagctttaatgttctcgccaatggcagctatactttgcctcaccaagtctttcactgaaacactgtcatccttaatga 33383859  T
Q  888 aaggctgctctagaagagcaagctctcctaatctctttgagattcttccctcaacaa 944  Q
    ||||||||| || |||||| || |||  ||| |||||||||||||||||||||||||    
T  33383860 aaggctgctttataagagcgagatctggtaacctctttgagattcttccctcaacaa 33383916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 87; E-Value: 7e-41
Query Start/End: Original strand, 1009 - 1180
Target Start/End: Original strand, 33383981 - 33384156
Alignment:
Q  1009 cttcgtcacagtggttttaggaatatcttcaatagatacaaactgaacctgtggacaagca----gcaacttgcattgcaagatcatgaacaaactcctt 1104  Q
    |||||||||| |||||| | |||||||||||| ||||||||||||||||| ||||||||||    || ||||||||||||||||||| ||| ||||||||    
T  33383981 cttcgtcacaatggtttcaagaatatcttcaacagatacaaactgaacctctggacaagcaagcagccacttgcattgcaagatcatcaaccaactcctt 33384080  T
Q  1105 gaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatg 1180  Q
     | |||||||||||| |||| |||||| |||| ||| |||||||||||||||||||  |||||||||| |||||||    
T  33384081 aattttctcacttctgccgacaaagtcggtttgacagttcacttcaattagaacaccgatgtgtgaatagtgaatg 33384156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 87; E-Value: 7e-41
Query Start/End: Original strand, 1679 - 1843
Target Start/End: Original strand, 33416366 - 33416536
Alignment:
Q  1679 aaaatggaagtataat--tcattttttctcttttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgt 1776  Q
    |||||||||||||| |  || ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| |    
T  33416366 aaaatggaagtatattcatcttttcttctcttttacatgtaaaaactgaaatacatgtataaattcaaatctgtccaacatatttacttctatttgatat 33416465  T
Q  1777 agaaaaattagaatagaaa----cagcaaataagatgaaattgaaaccattactcgagcctttgtctgaag 1843  Q
    |||||||| ||||| ||||     ||||||||||||||||| |||||| |||||||||||||  |||||||    
T  33416466 agaaaaatgagaattgaaatatgaagcaaataagatgaaatggaaacctttactcgagccttcatctgaag 33416536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 86; E-Value: 3e-40
Query Start/End: Original strand, 1276 - 1468
Target Start/End: Original strand, 33416152 - 33416345
Alignment:
Q  1276 caagtgttggtgatatagttgctgcaattcaaaggg-gacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggct 1374  Q
    |||||| ||||||||||||||||||||| ||||||| | | ||| |||||||||| ||||| ||  ||||  ||| ||||||||||||||||||||| ||    
T  33416152 caagtgctggtgatatagttgctgcaatccaaagggcggcggaacagacatttaacaattagaagtcttaactaaaaattcaaagataggtgaacagact 33416251  T
Q  1375 agaaaactaagacttagtttggataaataacctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctatttttata 1468  Q
    ||||||| | ||| | ||||||||||| ||||||||||||||||| ||||||| | || || || ||| |||||||||||||||||||||||||    
T  33416252 agaaaaccatgaccttgtttggataaacaacctaattaaagcttataagataagcgctcattatcaaagtgcttatgtataagctatttttata 33416345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 80; E-Value: 1e-36
Query Start/End: Original strand, 788 - 919
Target Start/End: Original strand, 33351400 - 33351530
Alignment:
Q  788 agagtgaaccgaacaaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatga 887  Q
    |||||||||||||||||||||||| |  |||||||||| |||||  |||||||||||||||||||||||||||| |||| ||||||||| |||||||| |    
T  33351400 agagtgaaccgaacaaaacgccgcgctttaatgttctctccaataccagctatactttgcctcaccaagtctttcactacaacactgtcgtccttaat-a 33351498  T
Q  888 aaggctgctctagaagagcaagctctcctaat 919  Q
    |||| ||| |||||||||||||||||||||||    
T  33351499 aaggatgccctagaagagcaagctctcctaat 33351530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 76; E-Value: 3e-34
Query Start/End: Original strand, 1103 - 1275
Target Start/End: Original strand, 33278972 - 33279139
Alignment:
Q  1103 ttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcag 1202  Q
    |||||||||| |||||| ||   |||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||| | |||||||||| ||    
T  33278972 ttgaatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatgtatgtaccaattcttcctttag 33279071  T
Q  1203 caactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttcatg 1275  Q
     | ||    | ||||||||||||||||| ||| |||||||| ||||||| |||||||||||||||||||||||    
T  33279072 tagct----tgccggatttcttgtcagctgataagagaccc-tttttctaaggtatgcttgcgccttttcatg 33279139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 75; E-Value: 1e-33
Query Start/End: Original strand, 1276 - 1461
Target Start/End: Complemental strand, 24632161 - 24631975
Alignment:
Q  1276 caagtgttggtgatatagttgctgcaattcaaagggga-cagaatagacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggct 1374  Q
    |||||| |||||||| |||||||||||| ||||  ||| ||||| |||||||||| ||||| ||| |||||||| |||||||||||| |||||||| | |    
T  24632161 caagtgctggtgataaagttgctgcaatccaaacaggagcagaacagacatttaacaattagaaatcttatgtaggaattcaaagattggtgaacaagtt 24632062  T
Q  1375 agaaaactaagacttagtttggataaataacctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctat 1461  Q
     |||||||||||| | ||||||||||  ||| ||||||||  ||| ||||||||| ||||||||| || |||||||| |||||||||    
T  24632061 ggaaaactaagacctcgtttggataagcaacttaattaaatattataagataaacgcttatcatataagtgcttatgcataagctat 24631975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 75; E-Value: 1e-33
Query Start/End: Original strand, 834 - 944
Target Start/End: Original strand, 33292802 - 33292912
Alignment:
Q  834 cagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattct 933  Q
    ||||||||||||||||| |||||||||| |   ||||||||||||||||||||||||||||||||| ||||| |||| ||||||| ||||||||||||||    
T  33292802 cagctatactttgcctctccaagtctttcaaagaaacactgtcatccttaatgaaaggctgctctataagagaaagccctcctaacctctttgagattct 33292901  T
Q  934 tccctcaacaa 944  Q
    |||||||||||    
T  33292902 tccctcaacaa 33292912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 68; E-Value: 2e-29
Query Start/End: Original strand, 505 - 616
Target Start/End: Original strand, 33413910 - 33414021
Alignment:
Q  505 atactgtaatcaaagagtgtctatccttgaatagatcaatgattgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaa 604  Q
    ||||| ||| ||||||||| ||||| |  || |||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  33413910 atactataagcaaagagtgcctatcttcaaacagatcaatgattaatgattattatcatttacatgataagtaacaaatgtcaagaattaatgaaacaaa 33414009  T
Q  605 caattcagacct 616  Q
    ||||||| ||||    
T  33414010 caattcaaacct 33414021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 65; E-Value: 1e-27
Query Start/End: Original strand, 1169 - 1273
Target Start/End: Original strand, 33293090 - 33293194
Alignment:
Q  1169 gaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgcct 1268  Q
    |||||||||||||||||| | ||||||||||||||  || |||||| ||||||||| |||||| |||||||||||||||||||||||||||||| | |||    
T  33293090 gaatcgtgaatgtatgtaccaattcttccttcagctgctagtcttctggatttcttatcagcgaatgagagacccttttttctgaggtatgctttcacct 33293189  T
Q  1269 tttca 1273  Q
    |||||    
T  33293190 tttca 33293194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 60; E-Value: 1e-24
Query Start/End: Original strand, 802 - 905
Target Start/End: Original strand, 33258067 - 33258170
Alignment:
Q  802 aaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatgaaaggctgctctaga 901  Q
    |||||||| |||  ||||| |||||| |||| ||||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||| |||||||    
T  33258067 aaaacgccacactttaatggtctcgcaaatgccagctatacttcgcctcaccaagtttttcactgaaacactgtcatccttaatgaaaggcttctctaga 33258166  T
Q  902 agag 905  Q
    ||||    
T  33258167 agag 33258170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 59; E-Value: 4e-24
Query Start/End: Original strand, 1020 - 1110
Target Start/End: Original strand, 33292988 - 33293078
Alignment:
Q  1020 tggttttaggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaattt 1110  Q
    |||||||  |||||||||||||||||||||||||||||||  ||  |||||||||||||||||||||||||| ||| ||||||||||||||    
T  33292988 tggttttgagaatatcttcaatagatacaaactgaacctgaagaatagcagcaacttgcattgcaagatcattaaccaactccttgaattt 33293078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 58; E-Value: 1e-23
Query Start/End: Original strand, 606 - 762
Target Start/End: Original strand, 33414090 - 33414254
Alignment:
Q  606 aattcagacctcatctatcctcgatagagatacatatcagtaaaatgtattggcgtctaatcaacatttggttattatga---------tttctgttttc 696  Q
    ||||||| |||||| ||||||| ||| ||||||| |||||||||| || |  ||| ||||||||||||||||||||||||         ||||||||| |    
T  33414090 aattcagtcctcatgtatcctcaatacagatacagatcagtaaaacgtgtccgcgcctaatcaacatttggttattatgaagaagcagatttctgttt-c 33414188  T
Q  697 aaaattgatctcactctgttgtatacttcttcctatgaaaatgcaacaaatacttttcttgaaaac 762  Q
    ||||||| ||||||||||  | ||||||||||||||||||||||||| | ||||| ||||||||||    
T  33414189 aaaattggtctcactctgccgcatacttcttcctatgaaaatgcaacgattacttctcttgaaaac 33414254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 57; E-Value: 6e-23
Query Start/End: Original strand, 868 - 940
Target Start/End: Original strand, 33269355 - 33269427
Alignment:
Q  868 aacactgtcatccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattcttccctca 940  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||| ||||||||    
T  33269355 aacactgtcatccttaataaaaggctactctagaagagcaagctctcctaacctctttgagatttttccctca 33269427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 55; E-Value: 9e-22
Query Start/End: Original strand, 1320 - 1502
Target Start/End: Original strand, 9165228 - 9165418
Alignment:
Q  1320 agacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggctagaaaactaagactta-------gtttggataaataacctaatta 1412  Q
    |||||||||| ||||| ||| ||||||||| ||||||||||||||||||||||||  ||| ||| ||  ||       |||||||||||   ||||||||    
T  9165228 agacatttaacaattagaaatcttatgtaaaaattcaaagataggtgaacaggctgcaaacctatgagctatgaccttgtttggataaacgccctaatta 9165327  T
Q  1413 aagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaaga--taaaatgaagtcatactgttttcctata 1502  Q
    ||||||| |||||||   |||| |||| || | ||||||||||||||||||||||| ||| |  ||| ||||||||||||||||||||||||    
T  9165328 aagcttataagataagtgctta-catataagtacttatgtataagctatttttataacaaaaggtaagatgaagtcatactgttttcctata 9165418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 55; E-Value: 9e-22
Query Start/End: Original strand, 534 - 616
Target Start/End: Original strand, 33351038 - 33351120
Alignment:
Q  534 aatagatcaatgattgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaacaattcagacct 616  Q
    ||||||||||||||| |||||||||||| ||||||  || |||||||||||| ||||||||||||||||||||||||| ||||    
T  33351038 aatagatcaatgattaatgattattatcctttacaatagtagtaacaaatgtcaagaattaatgaaacaaacaattcaaacct 33351120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 51; E-Value: 2e-19
Query Start/End: Original strand, 1800 - 1929
Target Start/End: Original strand, 33385707 - 33385837
Alignment:
Q  1800 aaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttg-tctcggatgc 1898  Q
    |||||||||||||||| |||| || ||| ||||||  ||||| |  ||||| ||||||||||||||||| ||||||| | ||||||||| | |   ||||    
T  33385707 aaataagatgaaattgcaacctttgctcaagccttcatctgacgctgtaattccggtttgtccattagagttagatacgctgttgtttgttttttaatgc 33385806  T
Q  1899 aattgcaacttcttcatcttcaacttgtact 1929  Q
    |||||||||||||||| ||||||||||||||    
T  33385807 aattgcaacttcttcaccttcaacttgtact 33385837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 46; E-Value: 2e-16
Query Start/End: Original strand, 636 - 774
Target Start/End: Original strand, 33351212 - 33351363
Alignment:
Q  636 tacatatcagtaaaatgtattggcgtctaatcaacatttggttattatga---------tttctgttttcaaaa-ttgatctcactctgttgtatacttc 725  Q
    |||| ||||||||||||| |  ||| ||||||||||||||||||||||||         ||||||||||||||| |||||||||||| |  | |||||||    
T  33351212 tacagatcagtaaaatgtgtccgcgcctaatcaacatttggttattatgaagaacaagatttctgttttcaaaaattgatctcactccgcagcatacttc 33351311  T
Q  726 ttcctatgaaaatgca---acaaatacttttcttgaaaactttttaagctat 774  Q
    ||||||||||||||||   |||||||||| |||||||| | || ||||||||    
T  33351312 ttcctatgaaaatgcaaagacaaatacttgtcttgaaagcgttgtaagctat 33351363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 45; E-Value: 9e-16
Query Start/End: Original strand, 1106 - 1230
Target Start/End: Original strand, 33280358 - 33280482
Alignment:
Q  1106 aatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaa 1205  Q
    |||||||||||||| || | |||||| || ||||| || ||||||| ||||| || |||| |||||||||||||||| |||  ||||| |||||||||      
T  33280358 aatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatgtaggtactgattcctccttcagctt 33280457  T
Q  1206 ctcgtcttccggatttcttgtcagc 1230  Q
     |  |||||||||||||||||||||    
T  33280458 ttaatcttccggatttcttgtcagc 33280482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 1513 - 1619
Target Start/End: Complemental strand, 24631970 - 24631864
Alignment:
Q  1513 ataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 1612  Q
    ||||||||||||| ||| | |  ||||||||||| |||||| ||||| ||||||| ||||  ||||||||||| |||||||| ||| ||| |||||||||    
T  24631970 ataagcttttctaaacagcttttggaaataagctaaaaacagcttttatggacatatcatgagttgtttccataaactcttccaaatagtttcacaagtg 24631871  T
Q  1613 ctaatat 1619  Q
    || ||||    
T  24631870 cttatat 24631864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1431 - 1505
Target Start/End: Complemental strand, 29274376 - 29274300
Alignment:
Q  1431 cttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 1505  Q
    ||||||||| || |||||||||||||||||||| ||||||  |||||||||| |||||| | ||||||| |||||||    
T  29274376 cttatcatagaaatgcttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagc 29274300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1855 - 1914
Target Start/End: Original strand, 33281320 - 33281376
Alignment:
Q  1855 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 1914  Q
    ||||||||||||||||||||||   || ||||||||||||||||||||||||| ||||||    
T  33281320 gtttgtccattagaattagata---tgctgtttgtctcggatgcaattgcaacctcttca 33281376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 37; E-Value: 0.00000000005
Query Start/End: Original strand, 878 - 918
Target Start/End: Complemental strand, 31567468 - 31567428
Alignment:
Q  878 tccttaatgaaaggctgctctagaagagcaagctctcctaa 918  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  31567468 tccttaatgaaaggctgctctagaagagaaagctctcctaa 31567428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 35; E-Value: 0.0000000008
Query Start/End: Original strand, 1227 - 1273
Target Start/End: Complemental strand, 28873091 - 28873045
Alignment:
Q  1227 cagcggatgagagacccttttttctgaggtatgcttgcgccttttca 1273  Q
    |||| |||||||||||||||| |||||||||||||| ||||||||||    
T  28873091 cagcagatgagagacccttttatctgaggtatgcttacgccttttca 28873045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 35; E-Value: 0.0000000008
Query Start/End: Original strand, 431 - 481
Target Start/End: Original strand, 33413817 - 33413867
Alignment:
Q  431 actttatcgcttcctttaagctttcactttttagatatatgcataacttat 481  Q
    ||||||||||| ||||||||||| ||||| ||||||||| |||||||||||    
T  33413817 actttatcgctccctttaagcttccacttcttagatatacgcataacttat 33413867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 35; E-Value: 0.0000000008
Query Start/End: Original strand, 1872 - 1926
Target Start/End: Original strand, 33416538 - 33416592
Alignment:
Q  1872 agataagttgttgtttgtctcggatgcaattgcaacttcttcatcttcaacttgt 1926  Q
    |||||||||| ||||||| || ||||||||||||||  |||||||||||||||||    
T  33416538 agataagttgctgtttgtttcagatgcaattgcaaccgcttcatcttcaacttgt 33416592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 1855 - 1914
Target Start/End: Original strand, 33301947 - 33302003
Alignment:
Q  1855 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 1914  Q
    ||||||||||||||||||||||   || ||||||||||||||||||| ||||| ||||||    
T  33301947 gtttgtccattagaattagata---tgatgtttgtctcggatgcaatagcaacctcttca 33302003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1536 - 1611
Target Start/End: Complemental strand, 281881 - 281808
Alignment:
Q  1536 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagt 1611  Q
    |||||||||||||||||||||| |   ||||||||||  |||| |||||||| |||| | ||||||||||||||||    
T  281881 ggaaataagctgaaaacaacttata--gacatgtcataagttgcttccattagctctcccaaacagtctcacaagt 281808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 1321 - 1362
Target Start/End: Original strand, 33282241 - 33282282
Alignment:
Q  1321 gacatttaaaaattacaaaccttatgtaagaattcaaagata 1362  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  33282241 gacatttaaaaattagaaatcttatgtaagaattcaacgata 33282282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 1321 - 1362
Target Start/End: Original strand, 33398042 - 33398083
Alignment:
Q  1321 gacatttaaaaattacaaaccttatgtaagaattcaaagata 1362  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  33398042 gacatttaaaaattataaatcttatgtaagaattcaacgata 33398083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 1321 - 1362
Target Start/End: Original strand, 33408952 - 33408993
Alignment:
Q  1321 gacatttaaaaattacaaaccttatgtaagaattcaaagata 1362  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  33408952 gacatttaaaaattataaatcttatgtaagaattcaacgata 33408993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 6e-60; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 6e-60
Query Start/End: Original strand, 1052 - 1273
Target Start/End: Complemental strand, 17447982 - 17447760
Alignment:
Q  1052 tgaacctgtggacaagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaa 1151  Q
    |||||||||||| ||||||| ||||||||||||||||||| ||| |||||||||||| |||| ||||| || | |||||| |||||| | |||| |||||    
T  17447982 tgaacctgtggaaaagcagccacttgcattgcaagatcatcaaccaactccttgaatctctcccttctgccaacaaagtcggtttcaaagttcaattcaa 17447883  T
Q  1152 ttagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagaga-cccttttttc 1250  Q
    ||||| |||  ||| ||| |||||||||||||||| ||||||||||||||||  |  |||||||||||||||| ||||||||||||||| ||||||||||    
T  17447882 ttagaccaccgatgcgtgcatcgtgaatgtatgtaccgattcttccttcagctgccagtcttccggatttcttatcagcggatgagagaccccttttttc 17447783  T
Q  1251 tgaggtatgcttgcgccttttca 1273  Q
    |||||||||||||||||||||||    
T  17447782 tgaggtatgcttgcgccttttca 17447760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-42
Query Start/End: Original strand, 778 - 944
Target Start/End: Complemental strand, 17445910 - 17445747
Alignment:
Q  778 tgtttctccaagagtgaaccgaacaaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtca 877  Q
    |||||||||  ||||||||| |||||||||||||||  |||    ||| ||||| ||||||||||||||||||||||| | ||| ||| |||| ||||||    
T  17445910 tgtttctccgggagtgaacctaacaaaacgccgcactttaaa---ctctccaatagcagctatactttgcctcaccaaatatttcactgaaacgctgtca 17445814  T
Q  878 tccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattcttccctcaacaa 944  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||    
T  17445813 tccttaatgaaaggctgctctagaagagcaagctctcctaacctctttgagatccttccctcgacaa 17445747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 684 - 760
Target Start/End: Complemental strand, 17446026 - 17445951
Alignment:
Q  684 gatttctgttttcaaaattgatctcactctgttgtatacttcttcctatgaaaatgcaacaaatacttttcttgaaa 760  Q
    ||||||||||| |||||||||||||||||||  | ||||||||||||||||||||||||||||||||| ||||||||    
T  17446026 gatttctgttt-caaaattgatctcactctgccgcatacttcttcctatgaaaatgcaacaaatacttgtcttgaaa 17445951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-19
Query Start/End: Original strand, 542 - 616
Target Start/End: Complemental strand, 17446233 - 17446159
Alignment:
Q  542 aatgattgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaacaattcagacct 616  Q
    ||||||| |||||||||||||||||||||||||||||||||| | |||| ||||| |||||||||||||| ||||    
T  17446233 aatgattaatgattattatcatttacatgagaagtaacaaatatcaagagttaatcaaacaaacaattcaaacct 17446159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 9e-19
Query Start/End: Original strand, 1797 - 1926
Target Start/End: Complemental strand, 17443503 - 17443374
Alignment:
Q  1797 agcaaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggat 1896  Q
    ||||||||||||||||||| |||| ||  || ||||||  |||||||  ||||||| ||||||||||||||| ||||||| |   |||||||| ||  ||    
T  17443503 agcaaataagatgaaattgcaacctttggtcaagccttcatctgaagctgtaatgctggtttgtccattagagttagatacgccattgtttgtttcaaat 17443404  T
Q  1897 gcaattgcaacttcttcatcttcaacttgt 1926  Q
    ||||||||||||||||||  ||||||||||    
T  17443403 gcaattgcaacttcttcacgttcaacttgt 17443374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 3e-18
Query Start/End: Original strand, 1009 - 1081
Target Start/End: Complemental strand, 17445679 - 17445607
Alignment:
Q  1009 cttcgtcacagtggttttaggaatatcttcaatagatacaaactgaacctgtggacaagcagcaacttgcatt 1081  Q
    |||| ||||| ||||||  ||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  17445679 cttcttcacaatggtttcgggaatatcttcaatagatacaaactgaacatgtggacaagcatcaacttgcatt 17445607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000005
Query Start/End: Original strand, 1577 - 1642
Target Start/End: Complemental strand, 17443602 - 17443537
Alignment:
Q  1577 tgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatc 1642  Q
    ||||||||| |||||||| ||||||||||||||||||| |||| | | ||||||||||||||||||    
T  17443602 tgtttccataaactcttccaaacagtctcacaagtgcttatatcagtatataagttcaaatacatc 17443537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 1424 - 1505
Target Start/End: Original strand, 34339039 - 34339122
Alignment:
Q  1424 ataaacacttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 1505  Q
    |||||||||||||||| || ||||||||||||| || ||| ||||||  |||||||||| |||||| ||||||||| |||||||    
T  34339039 ataaacacttatcatataagtgcttatgtataaactttttctatagctaaagataaaataaagtcagactgttttcgtataagc 34339122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1432 - 1472
Target Start/End: Original strand, 3102617 - 3102657
Alignment:
Q  1432 ttatcataaaattgcttatgtataagctatttttatagcaa 1472  Q
    |||||||| || |||||||||||||||||||||||||||||    
T  3102617 ttatcatataactgcttatgtataagctatttttatagcaa 3102657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 494
Target Start/End: Complemental strand, 17446348 - 17446284
Alignment:
Q  430 aactttatcgcttcctttaagctttcactttttagatatatgcataacttataaagtaaatttca 494  Q
    |||||||| ||||||||||||||| |||||   ||||||| |||||||||||| || ||||||||    
T  17446348 aactttattgcttcctttaagcttccacttcccagatatacgcataacttatagagcaaatttca 17446284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1537 - 1614
Target Start/End: Complemental strand, 14299663 - 14299588
Alignment:
Q  1537 gaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 1614  Q
    ||||||||||||||||||  | | |||| |||||||  ||||||||||| |||||||| |||||||| | ||||||||    
T  14299663 gaaataagctgaaaacaa--tgtatggatatgtcataagttgtttccataaactcttccaaacagtccctcaagtgct 14299588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 2012 - 2050
Target Start/End: Original strand, 26328079 - 26328117
Alignment:
Q  2012 aagatctacaagggttcaaagacactctgtcaattgtca 2050  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  26328079 aagatctacaagggatcaaagacactttgtcaattgtca 26328117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 1444 - 1505
Target Start/End: Complemental strand, 7103615 - 7103554
Alignment:
Q  1444 tgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagc 1505  Q
    |||||||||| || |||| |||||| ||||||||||| |||||| ||||||||  |||||||    
T  7103615 tgcttatgtagaaactatatttataacaagataaaataaagtcaaactgttttaatataagc 7103554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 115; Significance: 1e-57; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 1e-57
Query Start/End: Original strand, 1941 - 2075
Target Start/End: Complemental strand, 35958792 - 35958658
Alignment:
Q  1941 tgctcgttcactgttaggaaaacttgcatcttctgcttatgaagaagcttctcgagcctatggtgtgtataaagatctacaagggttcaaagacactctg 2040  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||     
T  35958792 tgctcgttcactgttaggaaaacttgcatcttatgcttatgaagaagcttctcgtgcctatggtgtgtataaagatctacaagagttcaaagacactctc 35958693  T
Q  2041 tcaattgtcagtggtgtactgttggatgctgagtg 2075  Q
    |||||||||||||||||| ||||||||||||||||    
T  35958692 tcaattgtcagtggtgtattgttggatgctgagtg 35958658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-55
Query Start/End: Original strand, 1941 - 2075
Target Start/End: Complemental strand, 35978247 - 35978113
Alignment:
Q  1941 tgctcgttcactgttaggaaaacttgcatcttctgcttatgaagaagcttctcgagcctatggtgtgtataaagatctacaagggttcaaagacactctg 2040  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||     
T  35978247 tgctcattcactgttaggaaaacttgcatcttatgcttatgaagaagcttctctagcctatggtgtgtataaagatctccaagggttcaaagacactctc 35978148  T
Q  2041 tcaattgtcagtggtgtactgttggatgctgagtg 2075  Q
    |||||||||||||||||| ||||||||||||||||    
T  35978147 tcaattgtcagtggtgtattgttggatgctgagtg 35978113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 4e-55
Query Start/End: Original strand, 1941 - 2075
Target Start/End: Complemental strand, 35999659 - 35999525
Alignment:
Q  1941 tgctcgttcactgttaggaaaacttgcatcttctgcttatgaagaagcttctcgagcctatggtgtgtataaagatctacaagggttcaaagacactctg 2040  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||     
T  35999659 tgctcattcactgttaggaaaacttgcatcttatgcttatgaagaagcttctctagcctatggtgtgtataaagatctccaagggttcaaagacactctc 35999560  T
Q  2041 tcaattgtcagtggtgtactgttggatgctgagtg 2075  Q
    |||||||||||||||||| ||||||||||||||||    
T  35999559 tcaattgtcagtggtgtattgttggatgctgagtg 35999525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 4e-24
Query Start/End: Original strand, 1947 - 2073
Target Start/End: Original strand, 36216894 - 36217020
Alignment:
Q  1947 ttcactgttaggaaaacttgcatcttctgcttatgaagaagcttctcgagcctatggtgtgtataaagatctacaagggttcaaagacactctgtcaatt 2046  Q
    |||||||||||| |||||||| |||| ||||||||||||||| ||||| ||||| ||||| ||| ||||||| ||| || ||||||| ||||| ||||||    
T  36216894 ttcactgttagggaaacttgcttcttatgcttatgaagaagcctctcgtgcctacggtgtatatgaagatctccaacggatcaaagatactctatcaatt 36216993  T
Q  2047 gtcagtggtgtactgttggatgctgag 2073  Q
    ||||| ||| ||||| | |||||||||    
T  36216994 gtcagaggtctactgctagatgctgag 36217020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 6e-23
Query Start/End: Original strand, 1977 - 2073
Target Start/End: Complemental strand, 35947551 - 35947455
Alignment:
Q  1977 ttatgaagaagcttctcgagcctatggtgtgtataaagatctacaagggttcaaagacactctgtcaattgtcagtggtgtactgttggatgctgag 2073  Q
    |||||||||| ||||||| ||||||||||||||| || |||||||| | || | |||||||||| ||||||||||||||||| ||||||||||||||    
T  35947551 ttatgaagaaacttctcgtgcctatggtgtgtatgaacatctacaatgtttgagagacactctggcaattgtcagtggtgtattgttggatgctgag 35947455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 2e-22
Query Start/End: Original strand, 1947 - 2018
Target Start/End: Complemental strand, 35931035 - 35930964
Alignment:
Q  1947 ttcactgttaggaaaacttgcatcttctgcttatgaagaagcttctcgagcctatggtgtgtataaagatct 2018  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||    
T  35931035 ttcactattaggaaaacttgcatcttatgcttatgaagaagcttctcgtgcctatgatgtgtataaagatct 35930964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 9e-19
Query Start/End: Original strand, 1980 - 2073
Target Start/End: Complemental strand, 36226655 - 36226562
Alignment:
Q  1980 tgaagaagcttctcgagcctatggtgtgtataaagatctacaagggttcaaagacactctgtcaattgtcagtggtgtactgttggatgctgag 2073  Q
    ||||||||||||||||||||||||||||||| ||||||| ||| || ||||||||||| || ||||||| || ||| | || ||||||||||||    
T  36226655 tgaagaagcttctcgagcctatggtgtgtatgaagatctccaacggatcaaagacactttggcaattgttagaggtcttctattggatgctgag 36226562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 2015 - 2075
Target Start/End: Complemental strand, 35926457 - 35926397
Alignment:
Q  2015 atctacaagggttcaaagacactctgtcaattgtcagtggtgtactgttggatgctgagtg 2075  Q
    |||| ||||||| |||||||||||| |||||||||||||||||| ||| ||||||||||||    
T  35926457 atctccaagggtccaaagacactctctcaattgtcagtggtgtattgtcggatgctgagtg 35926397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 1985 - 2069
Target Start/End: Original strand, 36220925 - 36221009
Alignment:
Q  1985 aagcttctcgagcctatggtgtgtataaagatctacaagggttcaaagacactctgtcaattgtcagtggtgtactgttggatgc 2069  Q
    |||||||||| |||||  |||||||| | ||||| |||||| ||||||||||| ||||||||||||| ||| |||| ||||||||    
T  36220925 aagcttctcgtgcctaccgtgtgtatgatgatctccaagggatcaaagacactttgtcaattgtcagaggtctactattggatgc 36221009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 1963 - 2074
Target Start/End: Complemental strand, 35974091 - 35973980
Alignment:
Q  1963 cttgcatcttctgcttatgaagaagcttctcgagcctatggtgtgtataaagatctacaagggttcaaagacactctgtcaattgtcagtggtgtactgt 2062  Q
    ||||| |||| ||| ||||| || ||||||||| | |||||||||||| | ||||||||||   ||||| ||||| | ||||||||||  ||| | ||||    
T  35974091 cttgcttcttatgcctatgacgaggcttctcgaacttatggtgtgtatgatgatctacaagatatcaaaaacactttttcaattgtcataggtcttctgt 35973992  T
Q  2063 tggatgctgagt 2074  Q
    ||||||||||||    
T  35973991 tggatgctgagt 35973980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 1963 - 2074
Target Start/End: Complemental strand, 35995503 - 35995392
Alignment:
Q  1963 cttgcatcttctgcttatgaagaagcttctcgagcctatggtgtgtataaagatctacaagggttcaaagacactctgtcaattgtcagtggtgtactgt 2062  Q
    ||||| |||| ||| ||||| || ||||||||| | |||||||||||| | ||||||||||   ||||| ||||| | ||||||||||  ||| | ||||    
T  35995503 cttgcttcttatgcctatgacgaggcttctcgaacttatggtgtgtatgatgatctacaagatatcaaaaacactttttcaattgtcataggtcttctgt 35995404  T
Q  2063 tggatgctgagt 2074  Q
    ||||||||||||    
T  35995403 tggatgctgagt 35995392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000008
Query Start/End: Original strand, 1499 - 1612
Target Start/End: Original strand, 3468614 - 3468725
Alignment:
Q  1499 tataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaa 1598  Q
    |||||||  ||||||||| || | ||||| ||| |  ||||||||| || ||||||||| ||  ||||||||||| ||||||||||  |||||| |||||    
T  3468614 tataagcttttttcataatctatcctagagaacttgtggaaataagttggaaacaacttatg--gacatgtcattagttgtttccaacaactctccgaaa 3468711  T
Q  1599 cagtctcacaagtg 1612  Q
    |||||||| |||||    
T  3468712 cagtctcaaaagtg 3468725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1424 - 1505
Target Start/End: Complemental strand, 3610894 - 3610811
Alignment:
Q  1424 ataaacacttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 1505  Q
    |||||||||| ||||| || |||||||||||||||||||| || | |  |||||||||||||| || ||||||||  |||||||    
T  3610894 ataaacacttgtcatataagtgcttatgtataagctatttctacaacaaaagataaaatgaaggcaaactgttttggtataagc 3610811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1432 - 1553
Target Start/End: Complemental strand, 26935696 - 26935573
Alignment:
Q  1432 ttatcataaaattgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagaca 1529  Q
    |||||||| || ||||| ||| ||||||||||||||| |||  |||||||| | || | | ||||||| ||| ||| |||||||||| || ||||| | |    
T  26935696 ttatcatataagtgcttttgtgtaagctatttttataacaaatgataaaataaggttaaattgttttcatatgagctattttcataatctattctaaaga 26935597  T
Q  1530 acatacggaaataagctgaaaaca 1553  Q
     | || ||||||||||||||||||    
T  26935596 gcttatggaaataagctgaaaaca 26935573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 1390 - 1468
Target Start/End: Complemental strand, 22388093 - 22388014
Alignment:
Q  1390 agtttggataaataacctaattaaa-gcttacaagataaacacttatcataaaattgcttatgtataagctatttttata 1468  Q
    |||||||||||| ||| |||||||  ||||| || |||||||||||||||  || |||||||| ||||||||||| ||||    
T  22388093 agtttggataaacaacttaattaagcgcttataacataaacacttatcatttaagtgcttatggataagctatttctata 22388014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1974 - 2048
Target Start/End: Complemental strand, 35982782 - 35982708
Alignment:
Q  1974 tgcttatgaagaagcttctcgagcctatggtgtgtataaagatctacaagggttcaaagacactctgtcaattgt 2048  Q
    |||||||||||| | |||| ||||||||||||||||| ||||| | ||| || ||||||| ||| || |||||||    
T  35982782 tgcttatgaagaggtttctggagcctatggtgtgtatgaagatttccaacggatcaaagatactttggcaattgt 35982708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1974 - 2048
Target Start/End: Complemental strand, 36004194 - 36004120
Alignment:
Q  1974 tgcttatgaagaagcttctcgagcctatggtgtgtataaagatctacaagggttcaaagacactctgtcaattgt 2048  Q
    |||||||||||| | |||| ||||||||||||||||| ||||| | ||| || ||||||| ||| || |||||||    
T  36004194 tgcttatgaagaggtttctggagcctatggtgtgtatgaagatttccaacggatcaaagatactttggcaattgt 36004120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 102; Significance: 8e-50; HSPs: 8)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 102; E-Value: 8e-50
Query Start/End: Original strand, 1046 - 1273
Target Start/End: Original strand, 2308 - 2537
Alignment:
Q  1046 acaaactgaacctgtggac-aagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttc 1144  Q
    ||||||||||||||||||| ||  ||| ||||||||||||||||| | ||| |||||||| |||||||||||||| || | |||||| |||||||  |||    
T  2308 acaaactgaacctgtggaccaaaaagctacttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttc 2407  T
Q  1145 acttcaattagaacactaatgtgtgaatcgtgaatg-tatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagaccc 1243  Q
    |||||||||||||||| ||||||||||||| || || |||||| |||||||||||||  |  || |||| ||||||||||| ||||||||||||||||||    
T  2408 acttcaattagaacaccaatgtgtgaatcgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccc 2507  T
Q  1244 ttttttctgaggtatgcttgcgccttttca 1273  Q
    |||||  |||| |||||||||| |||||||    
T  2508 tttttgatgagatatgcttgcggcttttca 2537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 85; E-Value: 1e-39
Query Start/End: Original strand, 1406 - 1642
Target Start/End: Original strand, 3802 - 4047
Alignment:
Q  1406 ctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttcctata- 1502  Q
    |||||| ||||||| ||||||| | |||  |||| || ||||||||| ||||||||||||||| |||  |||||| |||||||||||||||||||||||     
T  3802 ctaattcaagcttataagataagcgctttacatataagtgcttatgtgtaagctatttttataacaaaagataaactgaagtcatactgttttcctatat 3901  T
Q  1503 ------agcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcga 1596  Q
          ||| |||||||||||||||||||||||  ||| | |||   |||||||||| ||||| ||||||||||||  |  |||||||| |||||||| |    
T  3902 gctataagctattttcataagcttttctagacagtatatgtaaaatggctgaaaacagcttttatggacatgtcatgagccgtttccataaactcttcca 4001  T
Q  1597 aacagtctcacaagtgctaatatgactgtataagttcaaatacatc 1642  Q
    |||||||||||||||||| |||| | | ||||||||||||||||||    
T  4002 aacagtctcacaagtgcttatatcaatatataagttcaaatacatc 4047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 76; E-Value: 3e-34
Query Start/End: Original strand, 1103 - 1275
Target Start/End: Complemental strand, 15281 - 15114
Alignment:
Q  1103 ttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcag 1202  Q
    |||||||||| |||||| ||   |||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||| | |||||||||| ||    
T  15281 ttgaatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatgtatgtaccaattcttcctttag 15182  T
Q  1203 caactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttcatg 1275  Q
     | ||    | ||||||||||||||||| ||| |||||||| ||||||| |||||||||||||||||||||||    
T  15181 tagct----tgccggatttcttgtcagctgataagagaccc-tttttctaaggtatgcttgcgccttttcatg 15114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #4
Raw Score: 60; E-Value: 1e-24
Query Start/End: Original strand, 802 - 905
Target Start/End: Original strand, 2188 - 2291
Alignment:
Q  802 aaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatgaaaggctgctctaga 901  Q
    |||||||| |||  ||||| |||||| |||| ||||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||| |||||||    
T  2188 aaaacgccacactttaatggtctcgcaaatgccagctatacttcgcctcaccaagtttttcactgaaacactgtcatccttaatgaaaggcttctctaga 2287  T
Q  902 agag 905  Q
    ||||    
T  2288 agag 2291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #5
Raw Score: 45; E-Value: 9e-16
Query Start/End: Original strand, 1106 - 1230
Target Start/End: Complemental strand, 13895 - 13771
Alignment:
Q  1106 aatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaa 1205  Q
    |||||||||||||| || | |||||| || ||||| || ||||||| ||||| || |||| |||||||||||||||| |||  ||||| |||||||||      
T  13895 aatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatgtaggtactgattcctccttcagctt 13796  T
Q  1206 ctcgtcttccggatttcttgtcagc 1230  Q
     |  |||||||||||||||||||||    
T  13795 ttaatcttccggatttcttgtcagc 13771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #6
Raw Score: 44; E-Value: 0.000000000000003
Query Start/End: Original strand, 1276 - 1362
Target Start/End: Original strand, 3704 - 3791
Alignment:
Q  1276 caagtgttggtgatatagttgctgcaattcaaaggg-gacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagata 1362  Q
    |||||| ||||||||||||||||||||| ||||||| | | ||| |||||||||| || || ||| ||||||||||||||||||||||    
T  3704 caagtgctggtgatatagttgctgcaatccaaagggcggcggaacagacatttaacaactataaatcttatgtaagaattcaaagata 3791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #7
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1855 - 1914
Target Start/End: Complemental strand, 12932 - 12876
Alignment:
Q  1855 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 1914  Q
    ||||||||||||||||||||||   || ||||||||||||||||||||||||| ||||||    
T  12932 gtttgtccattagaattagata---tgctgtttgtctcggatgcaattgcaacctcttca 12876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #8
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 1321 - 1362
Target Start/End: Complemental strand, 12011 - 11970
Alignment:
Q  1321 gacatttaaaaattacaaaccttatgtaagaattcaaagata 1362  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  12011 gacatttaaaaattagaaatcttatgtaagaattcaacgata 11970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 1e-42; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-42
Query Start/End: Original strand, 1680 - 1834
Target Start/End: Complemental strand, 30653360 - 30653203
Alignment:
Q  1680 aaatggaagtataattcattttttctcttttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtaga 1779  Q
    |||||||||||||||| |||||||||||||||||||||||||  |||| |||||||||| ||||||||||||||||||| |||||| | |||||||| ||    
T  30653360 aaatggaagtataatttattttttctcttttacatgtaaaaaccgaaagacatgtataagttcaaatctgtctaacataattactt-tgttagatgttga 30653262  T
Q  1780 aaaattagaatagaaaca----gcaaataagatgaaattgaaaccattactcgagcctt 1834  Q
    ||||||||||||||||||    |||||||||||||||||  |||| |||||||||||||    
T  30653261 aaaattagaatagaaacatgacgcaaataagatgaaattttaacctttactcgagcctt 30653203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 1431 - 1553
Target Start/End: Original strand, 11684346 - 11684468
Alignment:
Q  1431 cttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagacaa 1530  Q
    ||||||||| || |||| |||||||||||||||||||| ||| ||| ||   ||| | ||||||||| ||||||| ||||||||||||| | || || |     
T  11684346 cttatcatataagtgctaatgtataagctatttttataacaaaatataaaatagtgaaactgttttcatataagctattttcataagctatgctggagag 11684445  T
Q  1531 catacggaaataagctgaaaaca 1553  Q
    | |||||||||||| ||||||||    
T  11684446 cttacggaaataagttgaaaaca 11684468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000005
Query Start/End: Original strand, 1507 - 1572
Target Start/End: Complemental strand, 30653438 - 30653373
Alignment:
Q  1507 attttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcat 1572  Q
    ||||||||||||||||||||||| | || |||||||||||||||||| ||||| || |||||||||    
T  30653438 attttcataagcttttctagacagcttatggaaataagctgaaaacagcttttatgaacatgtcat 30653373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000003
Query Start/End: Original strand, 1424 - 1505
Target Start/End: Complemental strand, 32059742 - 32059660
Alignment:
Q  1424 ataaacacttatcataaaattgcttatgtataagctatttttatagc-aagataaaatgaagtcatactgttttcctataagc 1505  Q
    ||||| |||||||||| || |||||||||||||||| ||||| || | |||||||||| |||||| ||||||||| |||||||    
T  32059742 ataaatacttatcatataagtgcttatgtataagctgtttttgtaactaagataaaataaagtcaaactgttttcatataagc 32059660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1424 - 1468
Target Start/End: Original strand, 10391269 - 10391313
Alignment:
Q  1424 ataaacacttatcataaaattgcttatgtataagctatttttata 1468  Q
    |||||||||||||||| || |||||| ||||||||||||||||||    
T  10391269 ataaacacttatcatataagtgcttacgtataagctatttttata 10391313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 1561 - 1612
Target Start/End: Original strand, 11457158 - 11457209
Alignment:
Q  1561 tggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 1612  Q
    ||||||||||||  ||||||||||| | |||||| |||||||||||||||||    
T  11457158 tggacatgtcataagttgtttccataagctcttcaaaacagtctcacaagtg 11457209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 1424 - 1463
Target Start/End: Complemental strand, 29115367 - 29115328
Alignment:
Q  1424 ataaacacttatcataaaattgcttatgtataagctattt 1463  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  29115367 ataaacatttatcataaaagtgcttatgtataagctattt 29115328  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000008; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000008
Query Start/End: Original strand, 1536 - 1614
Target Start/End: Complemental strand, 13000457 - 13000381
Alignment:
Q  1536 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 1614  Q
    ||||||||||||||||||||||  |||||||||||||  |||||| |||| |||||||  ||| |||||||||||||||    
T  13000457 ggaaataagctgaaaacaactt--gtggacatgtcataagttgttaccataaactcttgcaaatagtctcacaagtgct 13000381  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1429 - 1497
Target Start/End: Original strand, 26717178 - 26717246
Alignment:
Q  1429 cacttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttc 1497  Q
    ||||||||||| || ||||| || |||||||| ||||||| ||||||||||| |||||| ||| |||||    
T  26717178 cacttatcatataagtgcttctgaataagctaattttataacaagataaaataaagtcaaactattttc 26717246  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 1433 - 1519
Target Start/End: Original strand, 5290566 - 5290649
Alignment:
Q  1433 tatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataagct 1519  Q
    ||||||| || |||||||||||||||||||| |||| ||| |||||||  ||||| ||||||||| | ||||| || ||||||||||    
T  5290566 tatcatacaagtgcttatgtataagctatttctataacaa-ataaaat--agtcaaactgttttcatgtaagctatattcataagct 5290649  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 1424 - 1487
Target Start/End: Complemental strand, 26716590 - 26716527
Alignment:
Q  1424 ataaacacttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtca 1487  Q
    |||||||||||| ||| || ||||||||||||||||| || |||| |||||| |||| ||||||    
T  26716590 ataaacacttattatataagtgcttatgtataagctacttctataacaagattaaataaagtca 26716527  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 1536 - 1614
Target Start/End: Complemental strand, 30191174 - 30191098
Alignment:
Q  1536 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 1614  Q
    ||||||||||||||||||| |||||   |||||||||  ||||||||||| | |||| | ||||||||| |||||||||    
T  30191174 ggaaataagctgaaaacaagttttga--acatgtcataagttgtttccataagctctcccaaacagtctaacaagtgct 30191098  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1471 - 1557
Target Start/End: Complemental strand, 10079168 - 10079082
Alignment:
Q  1471 aagataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaactt 1557  Q
    ||||||||||||||||| ||||||||| |||||||  ||||||| |||| |||| || |   || ||||| ||||| ||||||||||    
T  10079168 aagataaaatgaagtcaaactgttttcgtataagctgttttcatgagctattctggaaagtttatggaaagaagcttaaaacaactt 10079082  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 1508 - 1557
Target Start/End: Original strand, 30389108 - 30389157
Alignment:
Q  1508 ttttcataagcttttctagacaacatacggaaataagctgaaaacaactt 1557  Q
    |||||||||||||| ||||| ||| || | ||||||||||||||||||||    
T  30389108 ttttcataagctttcctagagaacttatgaaaataagctgaaaacaactt 30389157  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 1431 - 1505
Target Start/End: Complemental strand, 34788574 - 34788498
Alignment:
Q  1431 cttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 1505  Q
    ||||||||| || |||||| |||||||||||||||||  |  |||||||||| |||||| ||||||| | |||||||    
T  34788574 cttatcatataaatgcttacgtataagctatttttatgaccaaagataaaataaagtcaaactgtttccatataagc 34788498  T

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Target: chr3 (Bit Score: 38; Significance: 0.00000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1536 - 1612
Target Start/End: Original strand, 43115093 - 43115167
Alignment:
Q  1536 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 1612  Q
    ||||||||||||||||||| || ||  ||||||||||  ||||||||||| |||||||| ||||| |||||||||||    
T  43115093 ggaaataagctgaaaacaagttatg--gacatgtcataagttgtttccataaactcttccaaacaatctcacaagtg 43115167  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 1424 - 1502
Target Start/End: Original strand, 38462197 - 38462277
Alignment:
Q  1424 ataaacacttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctata 1502  Q
    |||||||||||||||| || || |||| |||||||||||| |||| |  |||||||||| |||||| ||||||||| ||||    
T  38462197 ataaacacttatcatataagtgtttatttataagctatttctataccaaaagataaaataaagtcaaactgttttcatata 38462277  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1431 - 1504
Target Start/End: Original strand, 22232749 - 22232824
Alignment:
Q  1431 cttatcataaaattgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttcctataag 1504  Q
    ||||||||| || |||| ||||||||||||||| |||| |||  |||||||| |||||| ||||||||| ||||||    
T  22232749 cttatcatataaatgctcatgtataagctatttatataacaaatgataaaataaagtcaaactgttttcatataag 22232824  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 1415 - 1497
Target Start/End: Complemental strand, 3016011 - 3015928
Alignment:
Q  1415 gcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaa-gataaaatgaagtcatactgttttc 1497  Q
    ||||| || |||||||||||| ||| || ||||||||||| |  ||||| |||| ||| ||||||||||||||| |||||||||    
T  3016011 gcttataacataaacacttattatataagtgcttatgtattaattatttctataacaaagataaaatgaagtcaaactgttttc 3015928  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 1536 - 1614
Target Start/End: Original strand, 37273171 - 37273247
Alignment:
Q  1536 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 1614  Q
    ||||||||| |||||||||||| ||  ||||||||||  ||||||||||| | |||| | |||||||||||| ||||||    
T  37273171 ggaaataagttgaaaacaacttatg--gacatgtcataagttgtttccataagctctcccaaacagtctcaccagtgct 37273247  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 1539 - 1635
Target Start/End: Original strand, 24624250 - 24624344
Alignment:
Q  1539 aataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaa 1635  Q
    |||||||||||||||   ||| ||||||||||||  | ||||| ||| | |||||| ||||||||| |||||||||||| ||| |  ||||||||||    
T  24624250 aataagctgaaaacag--tttatggacatgtcataagctgttttcataagctcttccaaacagtcttacaagtgctaatgtgagtagataagttcaa 24624344  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 1434 - 1487
Target Start/End: Original strand, 44207697 - 44207750
Alignment:
Q  1434 atcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtca 1487  Q
    |||||| || ||||||| | ||||||||||||||||||||||||||| ||||||    
T  44207697 atcatacaagtgcttatatgtaagctatttttatagcaagataaaataaagtca 44207750  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 1563 - 1614
Target Start/End: Original strand, 15581316 - 15581367
Alignment:
Q  1563 gacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 1614  Q
    ||||||||||  ||||||||||||| |||||| ||||| |||||||||||||    
T  15581316 gacatgtcataagttgtttccattagctcttccaaacaatctcacaagtgct 15581367  T

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Target: scaffold0024 (Bit Score: 33; Significance: 0.00000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1446 - 1519
Target Start/End: Complemental strand, 21410 - 21335
Alignment:
Q  1446 cttatgtataagctatttttatag--caagataaaatgaagtcatactgttttcctataagcgattttcataagct 1519  Q
    ||||||||||||||||||||||||   |||||||||| |||| | | ||||||| |||||||  ||||||||||||    
T  21410 cttatgtataagctatttttataggaaaagataaaataaagttaaattgttttcgtataagctgttttcataagct 21335  T

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Target: chr4 (Bit Score: 31; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1433 - 1487
Target Start/End: Complemental strand, 32920543 - 32920489
Alignment:
Q  1433 tatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtca 1487  Q
    ||||||| || || ||||| |||||||||||||||| ||||||||||| ||||||    
T  32920543 tatcatataagtgtttatggataagctatttttataacaagataaaataaagtca 32920489  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1430 - 1497
Target Start/End: Original strand, 47970240 - 47970309
Alignment:
Q  1430 acttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttc 1497  Q
    |||| ||||| || |||||||||||||||||||| |||| |  ||||||||||||||||| ||| |||||    
T  47970240 acttgtcatataagtgcttatgtataagctatttctataacaaaagataaaatgaagtcaaactattttc 47970309  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1447 - 1517
Target Start/End: Complemental strand, 55437415 - 55437345
Alignment:
Q  1447 ttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataag 1517  Q
    |||| |||||||||||| |||| ||| ||||||| |||||| | | ||||| ||||||| |||||||||||    
T  55437415 ttatctataagctatttctataacaatataaaataaagtcaaattattttcatataagctattttcataag 55437345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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