View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14096_high_11 (Length: 425)
Name: NF14096_high_11
Description: NF14096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14096_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 8 - 188
Target Start/End: Original strand, 45073422 - 45073609
Alignment:
| Q |
8 |
agataattcttcaacctcaagaaatggcagtagcccacttgacagcaatggaaataaacctgcataggatgtatacctgcggaataaatccaaccatgag |
107 |
Q |
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| T |
45073422 |
agataattcttcaacctcaagaaatggcagtagcccacttgacagcaatggaaataaacctgcataggatgtatacctgcggaataaatccaaccatgag |
45073521 |
T |
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| Q |
108 |
tttgttagctgcagaacacaaactaagttaacg-------taagcagaacatgataagttcccttccaaacacaaatcattgtctaac |
188 |
Q |
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| T |
45073522 |
tttgttagctgcagaacacaaactaagttaacgtcaataataagcagaacatgataagttcccttccaaacacaaatcattgtctaac |
45073609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 255 - 406
Target Start/End: Original strand, 45073677 - 45073828
Alignment:
| Q |
255 |
gaaagttagtaaaacgaatttgcttacgcgagaatccattttccatcgagcaaactcaaggcatcagtggaagcaggggtgggaaacttagcctcgagct |
354 |
Q |
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| T |
45073677 |
gaaagttagtaaaacgaatttgcttacgcgagaatccattttccatcgagcaaactcaaggcatcagtggaagcaggggtgggaaacttagcctcgagct |
45073776 |
T |
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| Q |
355 |
gactaataagctcaaaaatctccgctcttgtctcactcgcggctttcaatcc |
406 |
Q |
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| T |
45073777 |
gactaataagctcaaaaatctccgctcttgtctcactcgcggctttcgatcc |
45073828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 255 - 406
Target Start/End: Original strand, 8880538 - 8880689
Alignment:
| Q |
255 |
gaaagttagtaaaacgaatttgcttacgcgagaatccattttccatcgagcaaactcaaggcatcagtggaagcaggggtgggaaacttagcctcgagct |
354 |
Q |
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| T |
8880538 |
gaaagttagtaaaacgaatttgcttacgcaagaatccattttccatcgagcaaactcaaagcatcagtggaagcgggggttggattcttagcctcgagct |
8880637 |
T |
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| Q |
355 |
gactaataagctcaaaaatctccgctcttgtctcactcgcggctttcaatcc |
406 |
Q |
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| T |
8880638 |
gactaataagctcaaaaatctccgctcttgtctcactcgccgctttcaatcc |
8880689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 8 - 188
Target Start/End: Original strand, 8880281 - 8880468
Alignment:
| Q |
8 |
agataattcttcaacctcaagaaatggcagtagcccacttgacagcaatggaaataaacctgcataggatgtatacctgcggaataaatccaaccatgag |
107 |
Q |
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| T |
8880281 |
agataattcttcaacctcgagtaatggcagtagcccgcttgacaacaatggaaataaacctgcataggatgtatacctgcggaataaatccaactataag |
8880380 |
T |
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| Q |
108 |
tttgttagctgcagaacacaaact-aagttaac-------gtaagcagaacatgataagttcccttccaaacacaaatcattgtctaac |
188 |
Q |
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| T |
8880381 |
tttgttagctgcagaacacaagctaaagttaacattaataataagcagaatatgagaa-ttcccttccaaacacaaatcattgtctaac |
8880468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 277 - 406
Target Start/End: Original strand, 8884662 - 8884791
Alignment:
| Q |
277 |
cttacgcgagaatccattttccatcgagcaaactcaaggcatcagtggaagcaggggtgggaaacttagcctcgagctgactaataagctcaaaaatctc |
376 |
Q |
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||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||| || |||||| |||||||||||| |||||| |
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| T |
8884662 |
cttacgcaagaatccattttccattgagcaaactcaaggcatcagtggaagcaggtgtgggattcttagcttccagctgagtaataagctcaacaatctc |
8884761 |
T |
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| Q |
377 |
cgctcttgtctcactcgcggctttcaatcc |
406 |
Q |
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| T |
8884762 |
agctctagtttcactcgtcgctttcaatcc |
8884791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 8884081 - 8884201
Alignment:
| Q |
8 |
agataattcttcaacctcaagaaatggcagtagcccacttgacagcaatggaaataaacctgcataggatgtatacctgcgga---ataaatccaaccat |
104 |
Q |
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||||| |||||||||| ||| ||||||||||| || || || ||||||||||||||||| ||| |||||||||||||| || | ||||| ||||| |
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| T |
8884081 |
agatatttcttcaaccgtaagtaatggcagtagtccgctcgaaagcaatggaaataaaccggcaaaggatgtatacctgaagaaccacaaatcaaaccac |
8884180 |
T |
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| Q |
105 |
gagtttgttagctgcagaaca |
125 |
Q |
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|||||| |||||||||||||| |
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| T |
8884181 |
gagtttattagctgcagaaca |
8884201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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