View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14096_high_8 (Length: 500)
Name: NF14096_high_8
Description: NF14096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14096_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 463; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 15 - 493
Target Start/End: Original strand, 39573917 - 39574395
Alignment:
| Q |
15 |
caattactacatacactacaggtatgattactcaagttgcaacttaacatgcttatttaaacacaaattgtatttagggtggaagcaaagcactgcattt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39573917 |
caattactacatacactacaggtatgattactcaagttgcaacttaacatgcttatttaaacacaaattgtatttagggtggaagcaaagcactgcattt |
39574016 |
T |
|
| Q |
115 |
tatcataggatccagcaattacaatttgctttattatatgattattgttttattccattcaatcatacaattgagaatagattaaacaaccataactaag |
214 |
Q |
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| T |
39574017 |
tatcataggatccagcaattacaagttgctttattatatgattattgttttattccatttaatcatacaattgagaatagattaaacaaccataactaag |
39574116 |
T |
|
| Q |
215 |
gggggaaacacaaggaaacaaggacaaaacagagaggcgagatatctaaagaaacagctcctccattggagacatttgcgtgttgattgttgtgccttga |
314 |
Q |
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| T |
39574117 |
gggggaaacacaaggaaacaaggacaaaacagagaggcgagatatctaaagaaacagctcctccattggagacatttgcgtgttgattgttgtgccttga |
39574216 |
T |
|
| Q |
315 |
tttgcttcgcatgaaagtctatctagcatcatcaatgttgcactttcagattcatcaaccctcccagtagacgtgccatccacttcagtcagtgtagaca |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39574217 |
tttgcttcgcatgaaagtctatctagcatcatcaatgttgcactttcagattcatcaatcctcccagtagacgtgccatccacttcagtcggtgtagaca |
39574316 |
T |
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| Q |
415 |
gagaaggtaaatgctgaacattaggcaattgaagtgatgcaaaagcactgctagaactatcctcatgcggttctctctg |
493 |
Q |
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| T |
39574317 |
gagaaggtaaatgctgaacattaggcaattgaagtgatgcaaaagcactgctagaactatcctcatgcggttctctctg |
39574395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 155 - 494
Target Start/End: Original strand, 39542230 - 39542561
Alignment:
| Q |
155 |
attattgttttattccattcaatcatacaattgagaatagattaaacaaccataactaaggggggaaacacaaggaaacaaggacaaaacagagaggcga |
254 |
Q |
| |
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||||||||||||||||||| |||| |||||||||||||||| || |||||||||||| ||||| || |||||||||||||||||||||||||| || |
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| T |
39542230 |
attattgttttattccatt-aatcttacaattgagaatagaccaag-aaccataactaatggggggaatacaaggaaacaaggacaaaacagagaaatga |
39542327 |
T |
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| Q |
255 |
gatatctaaagaaacagctcctccattggagacatttgcgtgttgattgttgtgccttgatttgcttcgcatgaaagtctatctagcatcatcaatgttg |
354 |
Q |
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| T |
39542328 |
ggtattgaaa-aaacagctcat-----ggagacacttgcgtgttgattgttgtaccttgatttgcatcgcatgaaattctgtctagcatcatcagcgctg |
39542421 |
T |
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| Q |
355 |
cactttcagattcatcaaccctcccagtagacgtgccatccacttcagtcagtgtagacagagaaggtaaatgctgaacattaggcaattgaagtgatgc |
454 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
39542422 |
cactttcagattcatcaaccctcccagtagacgtgccatccacttcagtcagtgcagacagagaaggtaaacgctgaacattaggcaattgaagtgacgc |
39542521 |
T |
|
| Q |
455 |
aaaagcactgctagaactatcctcatgcggttctctctgc |
494 |
Q |
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| T |
39542522 |
aaaagcactgctagaactatccctgtgtggttctctctgc |
39542561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 281 - 493
Target Start/End: Original strand, 39578716 - 39578928
Alignment:
| Q |
281 |
tggagacatttgcgtgttgattgttgtgccttgatttgcttcgcatgaaagtctatctagcatcatcaatgttgcactttcagattcatcaaccctccca |
380 |
Q |
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|||||||| |||||||||||||||||| ||||||||| |||||||||||| ||| ||||||||| ||| | |||||||||||||||||||||||||||| |
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| T |
39578716 |
tggagacacttgcgtgttgattgttgtcccttgattttcttcgcatgaaattctgtctagcatcgtcagcgctgcactttcagattcatcaaccctccca |
39578815 |
T |
|
| Q |
381 |
gtagacgtgccatccacttcagtcagtgtagacagagaaggtaaatgctgaacattaggcaattgaagtgatgcaaaagcactgctagaactatcctcat |
480 |
Q |
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| T |
39578816 |
gtagacgtgccatccactttagtcagggtagacagagaaggtaaacgctgaacattaggcaattgaagtgatgcaaaagcactgctagaactatcctcat |
39578915 |
T |
|
| Q |
481 |
gcggttctctctg |
493 |
Q |
| |
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| T |
39578916 |
gtggttctctctg |
39578928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 382 - 490
Target Start/End: Original strand, 39516437 - 39516545
Alignment:
| Q |
382 |
tagacgtgccatccacttcagtcagtgtagacagagaaggtaaatgctgaacattaggcaattgaagtgatgcaaaagcactgctagaactatcctcatg |
481 |
Q |
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|||||||| ||||| ||||| ||||||||||||||||||| ||| | |||||||||||||||||| |||| || ||||||||||||||||||||||||| |
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| T |
39516437 |
tagacgtgtcatccccttcactcagtgtagacagagaaggcaaacggcgaacattaggcaattgaattgatacagaagcactgctagaactatcctcatg |
39516536 |
T |
|
| Q |
482 |
cggttctct |
490 |
Q |
| |
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|||||||| |
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| T |
39516537 |
aggttctct |
39516545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 391 - 490
Target Start/End: Original strand, 39509378 - 39509477
Alignment:
| Q |
391 |
catccacttcagtcagtgtagacagagaaggtaaatgctgaacattaggcaattgaagtgatgcaaaagcactgctagaactatcctcatgcggttctct |
490 |
Q |
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| T |
39509378 |
catccacttcactcagtgtattcagagaaggtaaacggcgaacattgggcaattgaattgatacagaagcactgttagaactatcctcatgaggttctct |
39509477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 39542158 - 39542208
Alignment:
| Q |
29 |
actacaggtatgattactcaagttgcaacttaacatgcttatttaaacaca |
79 |
Q |
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||||| ||||| || || |||||| |||||||||||||||||||||||||| |
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| T |
39542158 |
actactggtataatcacgcaagttacaacttaacatgcttatttaaacaca |
39542208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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