View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14096_low_10 (Length: 462)
Name: NF14096_low_10
Description: NF14096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14096_low_10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 11 - 462
Target Start/End: Complemental strand, 39803576 - 39803128
Alignment:
| Q |
11 |
tatcaccaacttaaaacaattttagtcaaatatagataaaaaa-gagtaatagataatacattttgataatttaatgaataatattcaacttatatgtat |
109 |
Q |
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| T |
39803576 |
tatcaccaacttaaaacaattttagtcaaatatagataaaaaaagagtaatagataatacattttgataatttaatgaataatattcaacttatatgtat |
39803477 |
T |
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| Q |
110 |
tctttttggtcaaaaactttttggtcaaaaatttaagtgtaattttatttaataccgtatatcatagtttgacttaggttgagtnnnnnnntagatttga |
209 |
Q |
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| T |
39803476 |
tctttttggtcaaaaactttttggtcaaaaatttaagtgtaatcttatttaataccgtatatcatagtttgacttaggttgagtaaaaaaatagatttga |
39803377 |
T |
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| Q |
210 |
tttaattatatttatttatactattaac-nnnnnnnctgcacacttgatataactttgtgtgctatatatataacaacctaaatgactaaggcttactca |
308 |
Q |
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| T |
39803376 |
tttaattatatttatttatactattaacaaaaaaaactgcacacttgatataactttgtgtgctatatatataacaacctaactgactaaggcttactca |
39803277 |
T |
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| Q |
309 |
atcccacataatctgtctgcgaaggttaagaatataacaattacaacacaaattaaacatcatgagatttcaattcatttttcttatccttgttgttttg |
408 |
Q |
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| T |
39803276 |
atcccacataatctgtctgcgaaggttaagaatataacaattacaacac-----aaacatcatgagatttcaattcatttttcttatccttgttgttttg |
39803182 |
T |
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| Q |
409 |
tttgtctaattgacctcaaatcaagccaaacgacccatcaaatcgagctctgtc |
462 |
Q |
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| T |
39803181 |
tttgtctcattggcctcaaatcaagccaaacgaccaatccaatcgagccctgtc |
39803128 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 251 - 308
Target Start/End: Complemental strand, 34657425 - 34657369
Alignment:
| Q |
251 |
acttgatataactttgtgtgctatatatataacaacctaaatgactaaggcttactca |
308 |
Q |
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| T |
34657425 |
acttgatataa-tttgtgtgctataaatataacaacctaaccaactaaggcttactca |
34657369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 412
Target Start/End: Complemental strand, 7823235 - 7823189
Alignment:
| Q |
366 |
catcatgagatttcaattcatttttcttatccttgttgttttgtttg |
412 |
Q |
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| T |
7823235 |
catcatgagatttcaatctctttttcttattcttgttgttttgtttg |
7823189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 10326218 - 10326264
Alignment:
| Q |
263 |
tttgtgtgctatatatataacaacctaaatgactaaggcttactcaa |
309 |
Q |
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| T |
10326218 |
tttgtgtgctatatatataacaaccaatctgactaaggcatactcaa |
10326264 |
T |
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