View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14096_low_14 (Length: 338)
Name: NF14096_low_14
Description: NF14096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14096_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 327
Target Start/End: Original strand, 1415398 - 1415706
Alignment:
| Q |
19 |
aagaagtgatgtagatgtgcttgatgatggttacaaatggaggaagtatggtcaaaaagttgtcaagaatagtcttcatccaaggtaattaatccttcat |
118 |
Q |
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| T |
1415398 |
aagaagtgatgtagatgtgcttgatgatggttacaaatggaggaagtatggtcaaaaagttgtcaagaatagtcttcatccaaggtaattaatccttcat |
1415497 |
T |
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| Q |
119 |
tcatattattcttgcttatttaatctcttcattaaaaatatatttctatatttcaaatatgttatgattattacgtataatatataggttagtactaacc |
218 |
Q |
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| T |
1415498 |
tcatattattcttgcttaattaatctcttcattaaaaatatatttctatatttcaaatatgttatgattatcacgtataatatataggttaatattaacc |
1415597 |
T |
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| Q |
219 |
gtggttgatcggaagttgttgagtttcggttaaaattgtttgaaagaatatgaattgaacctcactaaaacaatcgttagtcagactttaaaattatacc |
318 |
Q |
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| T |
1415598 |
acggttgaacggaagttgttaaatttcgattaaaattgtttgaaagaatctgaattgaacctcactaaaacgatcgttagtcagactttaaaattatacc |
1415697 |
T |
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| Q |
319 |
aaggttcat |
327 |
Q |
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| T |
1415698 |
aagcttcat |
1415706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 38496084 - 38496022
Alignment:
| Q |
25 |
tgatgtagatgtgcttgatgatggttacaaatggaggaagtatggtcaaaaagttgtcaagaa |
87 |
Q |
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| T |
38496084 |
tgatgtggatgtgttggatgatggttacaagtggaggaagtatggacaaaaagttgtaaagaa |
38496022 |
T |
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