View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14096_low_16 (Length: 241)
Name: NF14096_low_16
Description: NF14096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14096_low_16 |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0437 (1 HSPs) |
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| [»] scaffold0013 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 241
Target Start/End: Original strand, 39802969 - 39803190
Alignment:
| Q |
20 |
gttagcagaaagggtgaggcggaaattgatcccatcattcaaagtatcaattacaccattgaggagtttctcgaacaccagttttgccttagtattttgc |
119 |
Q |
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| T |
39802969 |
gttagcagaaagtgtgaggcggaaattgatcccatcattcaaagtatcaattacaccattgaggagtttctcgaacaccagttttgccttagtattttgc |
39803068 |
T |
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| Q |
120 |
ttgttgtactcggtaacagcaaaagttgtgatattaatcacgtatggatcattgatgttgacagggctcgattggattggtcgtttggcttgatttgagg |
219 |
Q |
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| T |
39803069 |
ttgttgtactcgataacagcaaaagttgtgatattaatcacgtatggatcattgatgttgacagggctcgattggattggtcgtttggcttgatttgagg |
39803168 |
T |
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| Q |
220 |
ccaatgagacaaacaaaacaac |
241 |
Q |
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|||||||||||||||||||||| |
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| T |
39803169 |
ccaatgagacaaacaaaacaac |
39803190 |
T |
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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 143
Target Start/End: Complemental strand, 39894485 - 39894406
Alignment:
| Q |
64 |
tatcaattacaccattgaggagtttctcgaacaccagttttgccttagtattttgcttgttgtactcggtaacagcaaaa |
143 |
Q |
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| T |
39894485 |
tatcaattacaccattgataactttctcaaaaatcaattttgtctcattattttacttgttgtgctcggtaacagcaaaa |
39894406 |
T |
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Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 86 - 174
Target Start/End: Complemental strand, 10329773 - 10329685
Alignment:
| Q |
86 |
tttctcgaacaccagttttgccttagtattttgcttgttgtactcggtaacagcaaaagttgtgatattaatcacgtatggatcattga |
174 |
Q |
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| T |
10329773 |
tttctcgaataccagttttgcctcagtatgttgattgttgtactcagtaacagcaaaagtggcgatttcaatcacatgtggatcattga |
10329685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 10578555 - 10578484
Alignment:
| Q |
74 |
accattgaggagtttctcgaacaccagttttgccttagtattttgcttgttgtactcggtaacagcaaaagt |
145 |
Q |
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| T |
10578555 |
accattgatgactttctcgaatttcagttttgccttagtatgttgtttgttgtactcggtaacagcaaaagt |
10578484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 44664725 - 44664785
Alignment:
| Q |
117 |
tgcttgttgtactcggtaacagcaaaagttgtgatattaatcacgtatggatcattgatgt |
177 |
Q |
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| T |
44664725 |
tgcttgttgtactcggtaacagcaaaattggcgataacaatcacgtgtggatcgttgatgt |
44664785 |
T |
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Target: scaffold0437 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0437
Description:
Target: scaffold0437; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 5171 - 5246
Alignment:
| Q |
102 |
tttgccttagtattttgcttgttgtactcggtaacagcaaaagttgtgatattaatcacgtatggatcattgatgt |
177 |
Q |
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| T |
5171 |
tttgcctcggtattgtgcttgctgtactcggtaacagcaaaagtagcgacattaatcacgtgtggatcattgatgt |
5246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 174
Target Start/End: Complemental strand, 21264 - 21161
Alignment:
| Q |
71 |
tacaccattgaggagtttctcgaacaccagttttgccttagtattttgcttgttgtactcggtaacagcaaaagttgtgatattaatcacgtatggatca |
170 |
Q |
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||||||| ||| || ||||||||| ||||||||||||| ||||| ||| ||||||||||| |||||||||||||| | || | |||||| | ||||||| |
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| T |
21264 |
tacaccactgatgactttctcgaataccagttttgcctcagtatgttgattgttgtactcagtaacagcaaaagtggcgacttcaatcacatgtggatca |
21165 |
T |
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| Q |
171 |
ttga |
174 |
Q |
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|||| |
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| T |
21164 |
ttga |
21161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 174
Target Start/End: Complemental strand, 26607 - 26504
Alignment:
| Q |
71 |
tacaccattgaggagtttctcgaacaccagttttgccttagtattttgcttgttgtactcggtaacagcaaaagttgtgatattaatcacgtatggatca |
170 |
Q |
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||||||| ||| || ||||||||| ||||||||||||| ||||| ||| ||||||||||| |||||||||||||| | || | |||||| | ||||||| |
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| T |
26607 |
tacaccactgatgactttctcgaataccagttttgcctcagtatgttgattgttgtactcagtaacagcaaaagtggcgacttcaatcacatgtggatca |
26508 |
T |
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| Q |
171 |
ttga |
174 |
Q |
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|||| |
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| T |
26507 |
ttga |
26504 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 7823085 - 7823147
Alignment:
| Q |
116 |
ttgcttgttgtactcggtaacagcaaaagttgtgatattaatcacgtatggatcattgatgtt |
178 |
Q |
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| T |
7823085 |
ttgcttgttgtgttcggtaacagcaaatttagcgatatcaatcacgtatggatcactgatgtt |
7823147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 3937812 - 3937881
Alignment:
| Q |
73 |
caccattgaggagtttctcgaacaccagttttgccttagtattttgcttgttgtactcggtaacagcaaa |
142 |
Q |
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| T |
3937812 |
caccattggtgactttctcaaatacaagttttgcctcagtattttgcatattgtactcagtaacagcaaa |
3937881 |
T |
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