View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14096_low_17 (Length: 239)
Name: NF14096_low_17
Description: NF14096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14096_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 42324887 - 42325107
Alignment:
| Q |
1 |
accattaaaatacctaccaaatgtagcatctgttgttccaggaatatctgtcacaatcctgtattaaataaatacaacagaatttaatcaaacaaaataa |
100 |
Q |
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| T |
42324887 |
accattaaaatacctaccaaatgtagcatctgttgttccaggaatatctgtcacaatcctgtattaaataaatacaacagaatttaatcaaacaaaataa |
42324986 |
T |
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| Q |
101 |
ctggttaatttctagatatatggtactatatctcattatatattatatttaccagtgcaagtgttctcttagataaggatcactggggccaggaacatca |
200 |
Q |
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| T |
42324987 |
ctggttaatttctagatatatggtactatatctcattatatattatatttaccagtgcaagtgttctcttagataaggatcactagggccaggaacatca |
42325086 |
T |
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| Q |
201 |
gggtctgtcatcacctacacc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
42325087 |
gggtctgtcatcacctacacc |
42325107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 26206116 - 26206165
Alignment:
| Q |
150 |
taccagtgcaagtgttctcttagataaggatcactggggccaggaacatc |
199 |
Q |
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|||||||| ||||||||| | | |||||||||||| |||||||||||||| |
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| T |
26206116 |
taccagtgtaagtgttctttcatataaggatcacttgggccaggaacatc |
26206165 |
T |
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