View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14096_low_19 (Length: 203)

Name: NF14096_low_19
Description: NF14096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14096_low_19
NF14096_low_19
[»] scaffold0160 (1 HSPs)
scaffold0160 (16-157)||(28411-28552)
[»] chr1 (2 HSPs)
chr1 (67-152)||(1284834-1284919)
chr1 (86-131)||(33072763-33072808)
[»] scaffold0245 (2 HSPs)
scaffold0245 (67-152)||(9479-9564)
scaffold0245 (67-152)||(11101-11186)
[»] scaffold0229 (1 HSPs)
scaffold0229 (67-152)||(9807-9892)
[»] chr2 (2 HSPs)
chr2 (77-157)||(17149084-17149164)
chr2 (85-152)||(14007631-14007698)
[»] chr7 (4 HSPs)
chr7 (106-156)||(21631172-21631222)
chr7 (106-156)||(21633133-21633183)
chr7 (106-156)||(21631402-21631452)
chr7 (106-156)||(21633371-21633421)
[»] chr4 (2 HSPs)
chr4 (67-152)||(10032697-10032782)
chr4 (76-152)||(42664936-42665012)
[»] chr5 (2 HSPs)
chr5 (67-132)||(4897441-4897506)
chr5 (67-130)||(6742457-6742521)
[»] chr3 (3 HSPs)
chr3 (67-132)||(548118-548183)
chr3 (85-152)||(25836374-25836441)
chr3 (76-150)||(26667140-26667214)
[»] chr8 (1 HSPs)
chr8 (74-152)||(35674975-35675053)
[»] chr6 (1 HSPs)
chr6 (76-152)||(30488439-30488515)


Alignment Details
Target: scaffold0160 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 28552 - 28411
Alignment:
Q  16 aagaaagagagcgtaagagtattcatgtaagagataacagtggtgtgagacatttatagagtgaattaatctaactaactcttaattgaataaccaacca 115  Q
    |||||||||||||||||||||||||||| | |||||||||| |||||||||||| ||||||||| |||||||||||||||||||| || |||||||||||    
T  28552 aagaaagagagcgtaagagtattcatgtgaaagataacagtagtgtgagacattcatagagtgagttaatctaactaactcttaactgtataaccaacca 28453  T
Q  116 actaaccatagtttacctatcgactaactatggtttactcaa 157  Q
    ||||||||||||||||||||| ||||||||||||||| ||||    
T  28452 actaaccatagtttacctatcaactaactatggtttattcaa 28411  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 152
Target Start/End: Complemental strand, 1284919 - 1284834
Alignment:
Q  67 atttatagagtgaattaatctaactaactcttaattgaataaccaaccaactaaccatagtttacctatcgactaactatggttta 152  Q
    |||||||| |||| ||| |||||||||||||||| |   |||||||||||||||||||||||||| | || |||||||||||||||    
T  1284919 atttatagggtgagttagtctaactaactcttaactacctaaccaaccaactaaccatagtttacatctcaactaactatggttta 1284834  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 33072808 - 33072763
Alignment:
Q  86 ctaactaactcttaattgaataaccaaccaactaaccatagtttac 131  Q
    ||||||||||||||| |   ||||||||||||||||||||||||||    
T  33072808 ctaactaactcttaactacctaaccaaccaactaaccatagtttac 33072763  T

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Target: scaffold0245 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 67 - 152
Target Start/End: Complemental strand, 9564 - 9479
Alignment:
Q  67 atttatagagtgaattaatctaactaactcttaattgaataaccaaccaactaaccatagtttacctatcgactaactatggttta 152  Q
    |||||||| |||| ||| |||||||||| ||||| |   |||||||||||||||||||||||||| | || |||||||||||||||    
T  9564 atttatagggtgagttagtctaactaacacttaactacctaaccaaccaactaaccatagtttacatctcaactaactatggttta 9479  T

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Target: scaffold0245; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 67 - 152
Target Start/End: Complemental strand, 11186 - 11101
Alignment:
Q  67 atttatagagtgaattaatctaactaactcttaattgaataaccaaccaactaaccatagtttacctatcgactaactatggttta 152  Q
    |||||||| |||| ||| |||||||||||||||| |   |||||||||||||||||||||||||  | || |||||||||||||||    
T  11186 atttatagggtgagttagtctaactaactcttaactacctaaccaaccaactaaccatagtttatatctcaactaactatggttta 11101  T

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Target: scaffold0229 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 67 - 152
Target Start/End: Complemental strand, 9892 - 9807
Alignment:
Q  67 atttatagagtgaattaatctaactaactcttaattgaataaccaaccaactaaccatagtttacctatcgactaactatggttta 152  Q
    |||||||| |||| ||| |||||||||| ||||| |   |||||||||||||||||||||||||| | || |||||||||||||||    
T  9892 atttatagggtgagttagtctaactaacacttaactacctaaccaaccaactaaccatagtttacatctcaactaactatggttta 9807  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 157
Target Start/End: Original strand, 17149084 - 17149164
Alignment:
Q  77 tgaattaatctaactaactcttaattgaataaccaaccaactaaccatagtttacctatcgactaactatggtttactcaa 157  Q
    ||||||| ||||||| |||| |||||   ||| |||||||||||||||| |||||||||| ||||||||||||||| ||||    
T  17149084 tgaattagtctaactgactcctaattacttaaacaaccaactaaccataatttacctatcaactaactatggtttattcaa 17149164  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 85 - 152
Target Start/End: Complemental strand, 14007698 - 14007631
Alignment:
Q  85 tctaactaactcttaattgaataaccaaccaactaaccatagtttacctatcgactaactatggttta 152  Q
    |||||||||||||||| |   |||||||||||||||||||||||||| |||  |||||||||||||||    
T  14007698 tctaactaactcttaactacctaaccaaccaactaaccatagtttacatattaactaactatggttta 14007631  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 156
Target Start/End: Original strand, 21631172 - 21631222
Alignment:
Q  106 taaccaaccaactaaccatagtttacctatcgactaactatggtttactca 156  Q
    ||||| |||||||||||||||||||| |||| |||||||||||||||||||    
T  21631172 taacctaccaactaaccatagtttacatatcaactaactatggtttactca 21631222  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 156
Target Start/End: Original strand, 21633133 - 21633183
Alignment:
Q  106 taaccaaccaactaaccatagtttacctatcgactaactatggtttactca 156  Q
    ||||| |||||||||||||||||||| |||| |||||||||||||||||||    
T  21633133 taacctaccaactaaccatagtttacatatcaactaactatggtttactca 21633183  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 106 - 156
Target Start/End: Original strand, 21631402 - 21631452
Alignment:
Q  106 taaccaaccaactaaccatagtttacctatcgactaactatggtttactca 156  Q
    ||||| |||||||||||||||||||| |||| |||||| ||||||||||||    
T  21631402 taacctaccaactaaccatagtttacatatcaactaacaatggtttactca 21631452  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 106 - 156
Target Start/End: Original strand, 21633371 - 21633421
Alignment:
Q  106 taaccaaccaactaaccatagtttacctatcgactaactatggtttactca 156  Q
    ||||| |||||||||||||||||||| |||| |||||| ||||||||||||    
T  21633371 taacctaccaactaaccatagtttacatatcaactaacaatggtttactca 21633421  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 10032697 - 10032782
Alignment:
Q  67 atttatagagtgaattaatctaactaactcttaattgaataaccaaccaactaaccatagtttacctatcgactaactatggttta 152  Q
    |||||||| |||| ||| ||||||  |||||||| |   |||||||||||||||||||||||||| | || |||||||||||||||    
T  10032697 atttatagggtgagttagtctaaccgactcttaactacctaaccaaccaactaaccatagtttacatctcaactaactatggttta 10032782  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 152
Target Start/End: Complemental strand, 42665012 - 42664936
Alignment:
Q  76 gtgaattaatctaactaactcttaattgaataaccaaccaactaaccatagtttacctatcgactaactatggttta 152  Q
    |||| ||| |||||||||||||||| |   ||| ||||||||||||| |||||||| |||  |||||||||||||||    
T  42665012 gtgagttagtctaactaactcttaactacctaaacaaccaactaaccgtagtttacatattaactaactatggttta 42664936  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 132
Target Start/End: Original strand, 4897441 - 4897506
Alignment:
Q  67 atttatagagtgaattaatctaactaactcttaattgaataaccaaccaactaaccatagtttacc 132  Q
    |||||||| |||| ||| |||||||||||||||| |   ||| |||||||||||||||||||||||    
T  4897441 atttatagggtgagttagtctaactaactcttaactacctaatcaaccaactaaccatagtttacc 4897506  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 6742521 - 6742457
Alignment:
Q  67 atttataga-gtgaattaatctaactaactcttaattgaataaccaaccaactaaccatagttta 130  Q
    ||||||||| || ||||| | ||||||||||||||||   |||||||||||||||||||| ||||    
T  6742521 atttatagaagtaaattagtttaactaactcttaattacctaaccaaccaactaaccataattta 6742457  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 548183 - 548118
Alignment:
Q  67 atttatagagtgaattaatctaactaactcttaattgaataaccaaccaactaaccatagtttacc 132  Q
    |||||||| |||| ||| |||||||||||||||| |   ||||||||||||||| |||||||||||    
T  548183 atttatagtgtgagttagtctaactaactcttaactacctaaccaaccaactaatcatagtttacc 548118  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 85 - 152
Target Start/End: Complemental strand, 25836441 - 25836374
Alignment:
Q  85 tctaactaactcttaattgaataaccaaccaactaaccatagtttacctatcgactaactatggttta 152  Q
    |||||||||||| ||| |   |||| ||||||||| |||||||||| ||||| |||||||||||||||    
T  25836441 tctaactaactcctaactacctaactaaccaactagccatagtttatctatcaactaactatggttta 25836374  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 150
Target Start/End: Original strand, 26667140 - 26667214
Alignment:
Q  76 gtgaattaatctaactaactcttaattgaataaccaaccaactaaccatagtttacctatcgactaactatggtt 150  Q
    |||| ||| |||||||||||||||| |   |||| ||||||||||||||| ||||| |||  |||||||||||||    
T  26667140 gtgagttagtctaactaactcttaactacctaactaaccaactaaccataatttacatattaactaactatggtt 26667214  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 152
Target Start/End: Original strand, 35674975 - 35675053
Alignment:
Q  74 gagtgaattaatctaactaactcttaattgaataaccaaccaactaaccatagtttacctatcgactaactatggttta 152  Q
    |||||| ||| |||||||||||| ||| |   |||| ||||||||||||||||||||| |||  |||||||||| ||||    
T  35674975 gagtgagttagtctaactaactcctaactatctaactaaccaactaaccatagtttacatattaactaactatgattta 35675053  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 152
Target Start/End: Complemental strand, 30488515 - 30488439
Alignment:
Q  76 gtgaattaatctaactaactcttaattgaataaccaaccaactaaccatagtttacctatcgactaactatggttta 152  Q
    |||| ||| ||||||||||| |||| |   |||||||||||| ||||||| ||||| |||  |||||||||||||||    
T  30488515 gtgagttagtctaactaacttttaactatctaaccaaccaacaaaccataatttacatattaactaactatggttta 30488439  T

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