View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14096_low_4 (Length: 789)
Name: NF14096_low_4
Description: NF14096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14096_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-172; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 354 - 778
Target Start/End: Original strand, 7440043 - 7440459
Alignment:
| Q |
354 |
gaggaaagatatgagacaaaataaaagatgagagcgataaataaaaaggtagatgactttctctgcctaaaggtagagaatcctaatccattattttagc |
453 |
Q |
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| T |
7440043 |
gaggaaagatatgagacaaaataaaagatgagagcgataaataaaaaggtagatgactttctctgcctaaaggtagagaatcctaatccattattttagc |
7440142 |
T |
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| Q |
454 |
atgaataccagcagtaatcatgaaacaatgcaatatgttaaaagcaaaacacaacatgaaaacattagaatgctgtagcaaaataagcagaaccagtaga |
553 |
Q |
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| T |
7440143 |
atgaataccagcagtaatcatgaaacaatgcaatatgtaaaaagcaaaacacaacatgaaaacattagaatgctgtagcaaaataagcagaaccagtaga |
7440242 |
T |
|
| Q |
554 |
attccacccaaaaacaaagtagaaccaagttgaacaggataggctaatgaatcttttttctcatcattcttatttaacaatttaaactaataatcttata |
653 |
Q |
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| T |
7440243 |
attccacccaaaaacaaagtagaaccaagttgaacaggataggctaatgaatcttttttctcatcattct-----------------taataatcttata |
7440325 |
T |
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| Q |
654 |
gttgtgttttgttcggaactttatccgcgtgctgcaccg---------nnnnnnnnnggtattgtccgtttttggtattaaaacgtgctagagtttagaa |
744 |
Q |
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| T |
7440326 |
gttgtgttttgttcggaacttaatccacgtgctgcaccgtttttttttttgttttttggtattgtccgtttttggtattaaaacgtgctagagtttagaa |
7440425 |
T |
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| Q |
745 |
gagtgtctcgttataaactactcttaatcttcat |
778 |
Q |
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| T |
7440426 |
gagtgtctcgttataaactactcttaatcttcat |
7440459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 16 - 340
Target Start/End: Original strand, 7439681 - 7440003
Alignment:
| Q |
16 |
cataatgaagctccaatcagataaaaaattcatgacttttaccaccatactagcattttttgaatgacccctcaactcaactaaaactcaactttttcat |
115 |
Q |
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| T |
7439681 |
cataatgaagctccaatcagataaaaaattcatgacttttaccaccatactatcatgttttgaatgacccctcaactcaactaaaactcaactttttcat |
7439780 |
T |
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| Q |
116 |
ccttctgggttctggctatttcaaacagccactaggtaaattagtgattatgccacttccactttctttttcnnnnnnnnnnnnnnnnnnnnctccatgt |
215 |
Q |
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| T |
7439781 |
ccttctgggttctggctatttcaaacagccactaggtaaattagtgattatgccacttccactttctttttcatttattattattattattacttcatgc |
7439880 |
T |
|
| Q |
216 |
gtctcaaaataatagtcgtttaagatttttgcatgatttttnnnnnnnttattaaccgtgtcaatttcaatggtaaaattagtgatttagggtaaaaaag |
315 |
Q |
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| T |
7439881 |
gtctcaaaataatagtcgtttaaggtttttgcacgatttttagaaaaatgattaaccgtgtcaatttcaatggtaaaattagtgatttagggtaaaaa-- |
7439978 |
T |
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| Q |
316 |
agagagtgtgtagaaaaatgtggag |
340 |
Q |
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| T |
7439979 |
agagagtgtgtagaaaaatgtggag |
7440003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 3670039 - 3669991
Alignment:
| Q |
208 |
ctccatgtgtctcaaaataatagtcgtttaagatttttgcatgattttt |
256 |
Q |
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| T |
3670039 |
ctccatctgtctgaaaataatagtcgtttaagatttatgcatgattttt |
3669991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 371 - 436
Target Start/End: Complemental strand, 39344916 - 39344853
Alignment:
| Q |
371 |
aaaataaaagatgagagcgataaataaaaaggtagatgactttctctgcctaaaggtagagaatcc |
436 |
Q |
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| T |
39344916 |
aaaataaaagatgagag--ataaataaaaaggtaggtcactttccctccctaaagctagagaatcc |
39344853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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