View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14096_low_5 (Length: 744)
Name: NF14096_low_5
Description: NF14096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14096_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 2e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 50658090 - 50657920
Alignment:
| Q |
18 |
agagatagagagaaaacaatgtgttaaaatatcttctcaatagatatgatattattgaggttgggtagctcaattggtctgcgttaaatgatacggagtt |
117 |
Q |
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| T |
50658090 |
agagatagagagaaaacaatgtgttaaaatatcttctcgatagacatgatattattggggttgggtagctcaattagtttgcgttaaatgatacggagtt |
50657991 |
T |
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| Q |
118 |
gaagttgttgagtttaaactcggacaaaagagaaaaactgatctaataactataagacatgatattgtttt |
188 |
Q |
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| T |
50657990 |
gaagttgttgagtttaaactcggacaaaagagaaaaactgatctaataactataagacatgatattgtttt |
50657920 |
T |
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Target: chr1; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 470 - 701
Target Start/End: Original strand, 50640157 - 50640385
Alignment:
| Q |
470 |
ataggaattccaaattactcttagaaaatattattatatctctttcacctcacaattttgcagttgttaaagggttgtgcaatgagatttgaactagtct |
569 |
Q |
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| T |
50640157 |
ataggaatctcaaatcactcttaaaaagtatcattaaatctctttcaccttacaaattttcagttattaaagggttgtgcaatgagatttgaactagtcg |
50640256 |
T |
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| Q |
570 |
tacaaaagcatattggtgctgaaaatcactataaataattaggtat---atccctaccagtgtcttttaaaagctcactctttgttctataaccgatcca |
666 |
Q |
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| T |
50640257 |
tacaaaagcatattggtgctgaaaatgactaca--taattaggtaatggattcctaccagtatcttttaaa--cccactctttgttcta--agcaatcca |
50640350 |
T |
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| Q |
667 |
caacaaagttcatatttcttgtcatacaaacgaat |
701 |
Q |
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| T |
50640351 |
catcaaaattcaaatttcttgtcatgcaaaggaat |
50640385 |
T |
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