View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14096_low_6 (Length: 513)
Name: NF14096_low_6
Description: NF14096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14096_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 422
Target Start/End: Original strand, 33223376 - 33223781
Alignment:
| Q |
18 |
aacaatagatcctccaatttgcatatgcaattgaagatcgtttctttcttcatcatcattctcagtctcggtctcggattcaatctcaatcaattgtctg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33223376 |
aacaatagatcctccaatttgcatatgcaattgaagatcgtttctttcttcatcatcattctcagtctcggtatcggattcaatctcaatcaattgtctg |
33223475 |
T |
|
| Q |
118 |
ttctcataatagtgctgccttctttgagttacagcaccactatcagggcatgccttccaattccaaatccttgttgtagatacttgttgaaacatttgaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33223476 |
ttctcataatagtgctgccttctttgagttacagcaccactatcagggcatgccttccaattccaaatccttgttgtagatacttgttgaaacatttgaa |
33223575 |
T |
|
| Q |
218 |
gcaatgtcatagaagggtgttcaaaaggacccttcattgaaacatccaaaccattattgtttaacacagtaataactacttccgttgaaagccagacatc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
33223576 |
gcaatgtcatagaagggtgttcaaaaggacccttcattgaaacatccaaaccattattgtttaatacagtaataactacttccgttgaaagcccgacatc |
33223675 |
T |
|
| Q |
318 |
aac-nnnnnnngaaaaaatcccggcatcattatnnnnnnnncaatctctacaagtagcataatagtgtgctactgtcactgcaccagacttttcaactcc |
416 |
Q |
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||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33223676 |
aacttttttttgaaaaaatcccggcatcattataaaaaaaacaatctgtacaagtagcataatagtgtgctactgtcactgcaccagacttttcaactcc |
33223775 |
T |
|
| Q |
417 |
tctctt |
422 |
Q |
| |
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|||||| |
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| T |
33223776 |
tctctt |
33223781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 77 - 264
Target Start/End: Original strand, 33226350 - 33226543
Alignment:
| Q |
77 |
tctcagtctcggtctcggattcaatctcaatcaattgtctgttctcataatagtgctgccttctttgagttacagc-accactatcagggcatgccttcc |
175 |
Q |
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|||||||||||||||| | ||||||||||| || ||||||||||||| |||||||||||||||||| ||||||| | ||||||||||||||||||||||| |
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| T |
33226350 |
tctcagtctcggtctcaggttcaatctcaaccagttgtctgttctcagaatagtgctgccttctttcagttacaaccaccactatcagggcatgccttcc |
33226449 |
T |
|
| Q |
176 |
aattccaaatccttgttgtagatacttgttgaaacatttgaagcaa-----tgtcatagaagggtgttcaaaaggacccttcattgaaacatcc |
264 |
Q |
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| T |
33226450 |
acttccaaatccttgttgtagatacttgttgaaacatttgaagcaatttcttttcttagaagggtgttcagaaggacccttcattgaaacatcc |
33226543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 371 - 499
Target Start/End: Original strand, 33226664 - 33226795
Alignment:
| Q |
371 |
tagcataatagtgtgctactgtcactgcaccagacttttcaactcctctctttc---tctgctcctccacaataaggttcccttcattttcattcccaaa |
467 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||| ||||| |||||| |
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| T |
33226664 |
tagcataatagtgtgctactctcactgcaccagacttttcaactcctctctttctcttctgctccaccacaataaggttcccatcatattcatccccaaa |
33226763 |
T |
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| Q |
468 |
gtatataacgttcgtttttgtaacccctcccc |
499 |
Q |
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||||||||| |||||||||||||||||||||| |
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| T |
33226764 |
gtatataacattcgtttttgtaacccctcccc |
33226795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 166 - 272
Target Start/End: Complemental strand, 33246026 - 33245920
Alignment:
| Q |
166 |
catgccttccaattccaaatccttgttgtagatacttgttgaaacatttgaagcaatgtcatagaagggtgttcaaaaggacccttcattgaaacatcca |
265 |
Q |
| |
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|||||| |||| |||||||||| |||| |||||||||||| |||||||||||| ||| || ||||||||||||| ||||| |||||||||||||||||| |
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| T |
33246026 |
catgccgtccacttccaaatccatgttctagatacttgttcaaacatttgaaggaataccaaagaagggtgttcataaggatccttcattgaaacatcca |
33245927 |
T |
|
| Q |
266 |
aaccatt |
272 |
Q |
| |
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|| |||| |
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| T |
33245926 |
aatcatt |
33245920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 449 - 499
Target Start/End: Original strand, 33223779 - 33223829
Alignment:
| Q |
449 |
cttcattttcattcccaaagtatataacgttcgtttttgtaacccctcccc |
499 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
33223779 |
cttcattttcattcccaaggtatataacgttcgtttttgtaacccctcccc |
33223829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 300
Target Start/End: Original strand, 33226558 - 33226593
Alignment:
| Q |
265 |
aaaccattattgtttaacacagtaataactacttcc |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||| |
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| T |
33226558 |
aaaccattattgtttaccacagtaataactacttcc |
33226593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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