View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14096_low_9 (Length: 497)
Name: NF14096_low_9
Description: NF14096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14096_low_9 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Original strand, 29258161 - 29258657
Alignment:
| Q |
1 |
catatcacatcaaacaataacttgaaattataatagattttcaaaaatcagtaacaatgagaacatatatgaaatggaaaatacaagaaaatgcaacctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29258161 |
catatcacatcaaacaataacttgaaattataatagattttcaaaaatcagtaacaatgagaacatatatgaaatggaaaatacaagaaaatgcaacctt |
29258260 |
T |
|
| Q |
101 |
taaggaggcaagagcatttaaagaatgagaaaggaagtttctcacacagaagccagttttgaccatgaacaattccatagaagctcaaatcaa------a |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
29258261 |
taaggaggcaagagcatttaaagaatgagaaaggaagtttctcacacagaagccagttttgaccatgaacaattccatagaagctcaaatcaaagtcaaa |
29258360 |
T |
|
| Q |
195 |
gctgacgcaacccaaatcttcaagtaccaattgacatgacaaatcatattttgaaactaaagaaagctactaccaagatgtctacaaagcatattgaaat |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29258361 |
gctgacgcaacccaaatcttcaagtaccaattgacatgacaaatcatattttgaaactaaagaaagctactaccaagatgtctacaaagcatattgaaat |
29258460 |
T |
|
| Q |
295 |
tatacaaggaggaaggttgacaattattaaaccaataactcatacaaaattatagagattagataacaaaaatatcagcaataataaggtcatttcacat |
394 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29258461 |
tatacaaggaggaaggttgacaataaataaaccaataactcatacaaaattatagagattagataacaaaaatatcagcaataataaggccatttcacat |
29258560 |
T |
|
| Q |
395 |
caaaacccacgagcacatcataatgcaagcaactcttctaagtttg-aaaaatcaagagcataatgttttctgattttgcagggaataagaagatcc |
490 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||| |
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|
| T |
29258561 |
gaaaacccacgagcacatcataatgcaagcaactcttctaagtttgaaaaaatcaagagtataatgttttctgattttgctgggaataagaagatcc |
29258657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 29382279 - 29382492
Alignment:
| Q |
1 |
catatcacatcaaacaataacttgaaattataatagattttcaaaaatcagtaacaatgagaacatatatgaaatggaaaatacaagaaaatgcaacctt |
100 |
Q |
| |
|
||||||| |||||||||||| ||||||| |||||||||||| ||| |||||| || ||||||||| ||||| |||||||||||||||||||| |
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|
| T |
29382279 |
catatcatatcaaacaataatttgaaatcataatagatttttaaag-tcagtatcagtgagaacat----gaaattgaaaatacaagaaaatgcaa---- |
29382369 |
T |
|
| Q |
101 |
taaggaggcaagagcatttaaagaatgagaaaggaagtttctcacacagaagccagttttgaccatgaacaattccatagaagctcaaatcaaagctgac |
200 |
Q |
| |
|
||| |||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||| | || |||||||||| |
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|
| T |
29382370 |
--aggtggcaagagtgtttaaagaatgagaaaggaagtttctcacacagaaccctgttttgaccatgaaaaattccatagaagccccaaccaaagctgac |
29382467 |
T |
|
| Q |
201 |
gcaacccaaatcttcaagtaccaat |
225 |
Q |
| |
|
||||||| ||||||||||||||||| |
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|
| T |
29382468 |
gcaaccccaatcttcaagtaccaat |
29382492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 263 - 388
Target Start/End: Complemental strand, 29286658 - 29286534
Alignment:
| Q |
263 |
actaccaagatgtctacaaagcatattgaaattatacaaggaggaaggttgacaattattaaaccaataactcatacaaaattatagagattagataaca |
362 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||| |||||||| |||| | |||||||||||||||| |||||||||||| || | |||||| |
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|
| T |
29286658 |
actaccaagatgtctacatagcatattgaaattacacaaggaagaaggttggcaataagtaaaccaataactcatgcaaaattatagatatca-ataaca |
29286560 |
T |
|
| Q |
363 |
aaaatatcagcaataataaggtcatt |
388 |
Q |
| |
|
|||||||| |||| ||||||| |||| |
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|
| T |
29286559 |
aaaatatccgcaacaataaggccatt |
29286534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 288 - 383
Target Start/End: Complemental strand, 35235085 - 35234990
Alignment:
| Q |
288 |
ttgaaattatacaaggaggaaggttgacaattattaaaccaataactcatacaaaattatagagattagataacaaaaatatcagcaataataagg |
383 |
Q |
| |
|
|||||| || ||||||| |||||||| |||| | ||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||| |
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|
| T |
35235085 |
ttgaaagtacacaaggaagaaggttggcaataagtaaaccaataactcatacaaaattatagatatcagataacaaaaatatcagcaacaataagg |
35234990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 319 - 382
Target Start/End: Complemental strand, 29262360 - 29262294
Alignment:
| Q |
319 |
tattaaaccaataactcatacaaaattataga---gattagataacaaaaatatcagcaataataag |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
29262360 |
tattaaaccaataactcatacaaaattatagatattattagataacaaaaatatcagcaacaataag |
29262294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 69 - 225
Target Start/End: Original strand, 21347546 - 21347696
Alignment:
| Q |
69 |
atgaaatggaaaatacaagaaaatgcaacctttaaggaggcaagagcatttaaagaatgagaaaggaagtttctcacacagaagccagttttgaccatga |
168 |
Q |
| |
|
|||| ||||||||| ||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
21347546 |
atgagatggaaaattcaagaaaatgcaa------aggtggcaagagtgtttaaagaatgagaaaggaagtttctcacacagaagcctgttttgaccatga |
21347639 |
T |
|
| Q |
169 |
acaattccatagaagctcaaatcaaagctgacgcaacccaaatcttcaagtaccaat |
225 |
Q |
| |
|
| |||||||||||||||| || ||||||||||||||||| ||||||||||||||||| |
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|
| T |
21347640 |
aaaattccatagaagctccaaccaaagctgacgcaaccccaatcttcaagtaccaat |
21347696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 13 - 225
Target Start/End: Original strand, 24307 - 24508
Alignment:
| Q |
13 |
aacaataacttgaaattataatagattttcaaaaatcagtaacaatgagaacatatatgaaatggaaaatacaagaaaatgcaacctttaaggaggcaag |
112 |
Q |
| |
|
||||| || |||||||||||||||||||| ||| |||||| ||||||||| || || ||||||||| ||||||||||||| ||| |||||| |
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|
| T |
24307 |
aacaacaatttgaaattataatagatttttaaag-tcagtatcaatgagaaaat----gagatggaaaattcaagaaaatgcaa------aggtggcaag |
24395 |
T |
|
| Q |
113 |
agcatttaaagaatgagaaaggaagtttctcacacagaagccagttttgaccatgaacaattccatagaagctcaaatcaaagctgacgcaacccaaatc |
212 |
Q |
| |
|
|| |||||| ||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||| || ||||||||||||||||| |||| |
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|
| T |
24396 |
agtgtttaaataatgagaaatgaagtttctcacacagaagcctgttttgaccatgaaaaattccatagaagctccaaccaaagctgacgcaaccccaatc |
24495 |
T |
|
| Q |
213 |
ttcaagtaccaat |
225 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
24496 |
ttaaagtaccaat |
24508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 21359493 - 21359292
Alignment:
| Q |
13 |
aacaataacttgaaattataatagattttcaaaaatcagtaacaatgagaacatatatgaaatggaaaatacaagaaaatgcaacctttaaggaggcaag |
112 |
Q |
| |
|
||||| || |||||||||||||||||||| ||| |||||| ||||||||| || || ||||||||| ||||||||||||| ||| |||||| |
|
|
| T |
21359493 |
aacaacaatttgaaattataatagatttttaaag-tcagtatcaatgagaaaat----gagatggaaaattcaagaaaatgcaa------aggtggcaag |
21359405 |
T |
|
| Q |
113 |
agcatttaaagaatgagaaaggaagtttctcacacagaagccagttttgaccatgaacaattccatagaagctcaaatcaaagctgacgcaacccaaatc |
212 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||| | |||||||||||||||| |||| |
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|
| T |
21359404 |
agtgtttaaagaatgagaaaggaagtttctcacacagaagcctgttttgaccatgaaaaattcgatagaagctccaccaaaagctgacgcaaccccaatc |
21359305 |
T |
|
| Q |
213 |
ttcaagtaccaat |
225 |
Q |
| |
|
||||||||||||| |
|
|
| T |
21359304 |
ttcaagtaccaat |
21359292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 102 - 226
Target Start/End: Original strand, 21360888 - 21361012
Alignment:
| Q |
102 |
aaggaggcaagagcatttaaagaatgagaaaggaagtttctcacacagaagccagttttgaccatgaacaattccatagaagctcaaatcaaagctgacg |
201 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||| | ||||||||||| |
|
|
| T |
21360888 |
aaggtggcaagagtgtttaaagaatgagaaaggaagtttctcacacagaagcatgttttgaccatgaaaaattccgtagaagctccacccaaagctgacg |
21360987 |
T |
|
| Q |
202 |
caacccaaatcttcaagtaccaatt |
226 |
Q |
| |
|
|||||| |||||||||||||||||| |
|
|
| T |
21360988 |
caaccccaatcttcaagtaccaatt |
21361012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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