View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14097_high_1 (Length: 713)
Name: NF14097_high_1
Description: NF14097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14097_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 516; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 167 - 698
Target Start/End: Original strand, 23955713 - 23956244
Alignment:
| Q |
167 |
cttagtcttaccagcataagtagtgacaacaagttcatattcttgaccaagtttgacatcaacaagttcaaccaactctttctgctctttctcattaaga |
266 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23955713 |
cttagtcttaccagcataagtagtgacaacaagctcatattcttgaccaagtttgacatcaacaagttcaaccaactctttctgctctttctcattaaga |
23955812 |
T |
|
| Q |
267 |
gatctaggtgtgtgaagagaatcagtgacaccattacttctattcacaggcaaaaattcaaagtagcacatggtaggaataagagtgtaagacacttcac |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23955813 |
gatctaggtgtgtgaagagaatcagtgacaccattacttctattcacaggcaaaaattcaaagtagcacatggtaggaataagagtgtaagacacttcac |
23955912 |
T |
|
| Q |
367 |
taggttgacaaagagggttcaggttaacaccaaagtaacattcactagaagcatacatagtgcaaacaagtggtaaaccattgctgtaatgatccaaaat |
466 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
23955913 |
taggttgacaaagagggttcaagttaacaccaaagtaacattcactagaagcatacatagtgcaaacaagtggtaaaccattgctataatgatccaaaat |
23956012 |
T |
|
| Q |
467 |
aggaatatactgtgacattgttccagtcacaataacatccacatacttagtattaggccaaagcctagtaattatcccctgccaagaatttttactacac |
566 |
Q |
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| T |
23956013 |
aggaatatactgtgacattgttccagtcacaataacatccacatacttagtattaggccaaagcctagtaattatcccctgccaagaatttttactacac |
23956112 |
T |
|
| Q |
567 |
tcagtttggataaaatcagcaagtttaggatcaggtttaaggatcttcataacagaatctctcactgttgagtcagtaattaaagggtttacagtaccag |
666 |
Q |
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| T |
23956113 |
tcagtttggataaaatcagcaagtttaggatcaggtttaaggatcttcataacagaatctctcactgttgagtcagtaattaaagggttaacagtaccag |
23956212 |
T |
|
| Q |
667 |
ttctaatatcattgcaaagaagggtccaatgt |
698 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
23956213 |
ttctaatatcattgcaaagaagggtccaatgt |
23956244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 23955562 - 23955628
Alignment:
| Q |
14 |
atcacagtgcgaaagtaattttgatgttttattgaccacgtgattgccacacaattgaggttgcataag |
82 |
Q |
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| T |
23955562 |
atcacagtgcaaaagtaattttgatgttttatcgaccacgtgattgc--agcaattgaggttgcataag |
23955628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 477 - 554
Target Start/End: Original strand, 9191855 - 9191932
Alignment:
| Q |
477 |
tgtgacattgttccagtcacaataacatccacatacttagtattaggccaaagcctagtaattatcccctgccaagaa |
554 |
Q |
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| T |
9191855 |
tgtgacattgttctagtcacgttaacatccacgtacttagtatttggccaaagccaagtgaatattcccttccaagaa |
9191932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 127; Significance: 3e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 300 - 554
Target Start/End: Complemental strand, 34380785 - 34380531
Alignment:
| Q |
300 |
ttacttctattcacaggcaaaaattcaaagtagcacatggtaggaataagagtgtaagacacttcactaggttgacaaagagggttcaggttaacaccaa |
399 |
Q |
| |
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||||||||||| ||||| ||||||||| ||||||||||||| || |||||||| |||||||| | || ||| | | ||||||| || ||||||||||||| |
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| T |
34380785 |
ttacttctattaacaggtaaaaattcatagtagcacatggtggggataagagtataagacacatgacaaggcttagaaagaggattaaggttaacaccaa |
34380686 |
T |
|
| Q |
400 |
agtaacattcactagaagcatacatagtgcaaacaagtggtaaaccattgctgtaatgatccaaaataggaatatactgtgacattgttccagtcacaat |
499 |
Q |
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|||||||||||||||| ||||||||||| ||||| |||||||| ||||| || || | ||||||| ||||||| ||||||||||||||||| |||||||| |
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| T |
34380685 |
agtaacattcactagatgcatacatagtacaaactagtggtaacccattactatagtaatccaaagtaggaatgtactgtgacattgttcctgtcacaat |
34380586 |
T |
|
| Q |
500 |
aacatccacatacttagtattaggccaaagcctagtaattatcccctgccaagaa |
554 |
Q |
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|||||| |||||||||||||||||||| | |||||| || || || ||||||||| |
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| T |
34380585 |
aacatctacatacttagtattaggccacaacctagttataataccttgccaagaa |
34380531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 176 - 246
Target Start/End: Complemental strand, 34380918 - 34380848
Alignment:
| Q |
176 |
accagcataagtagtgacaacaagttcatattcttgaccaagtttgacatcaacaagttcaaccaactctt |
246 |
Q |
| |
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||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| || |||| ||||| |
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| T |
34380918 |
accagcataagtagtaacaacaagctcatattcttgaccaagcttgacatcaacaagatccaccacctctt |
34380848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 315 - 544
Target Start/End: Original strand, 15836861 - 15837090
Alignment:
| Q |
315 |
ggcaaaaattcaaagtagcacatggtaggaataagagtgtaagacacttcactaggttgacaaagagggttcaggttaacaccaaagtaacattcactag |
414 |
Q |
| |
|
||||| || ||||||||| ||| ||||||| ||| || ||||| || ||||| |||| ||| | |||||| | |||| ||||| ||||| ||| || |
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| T |
15836861 |
ggcaagaactcaaagtaggccatagtaggaacaagtgtataagatacctcacttggttcacataaagggtttaaattaagtccaaaataacactcagaag |
15836960 |
T |
|
| Q |
415 |
aagcatacatagtgcaaacaagtggtaaaccattgctgtaatgatccaaaataggaatatactgtgacattgttccagtcacaataacatccacatactt |
514 |
Q |
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||||||||||||| || ||||| || | ||||||||| |||| ||||||||| ||||||||||| ||||||||||| || ||||||||||| |||||||| |
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| T |
15836961 |
aagcatacatagtacacacaagaggaagaccattgctataataatccaaaatcggaatatactgcgacattgttccggtaacaataacatcaacatactt |
15837060 |
T |
|
| Q |
515 |
agtattaggccaaagcctagtaattatccc |
544 |
Q |
| |
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| | |||||||| | ||||||||| ||||| |
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| T |
15837061 |
actgttaggccataacctagtaatgatccc |
15837090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 15836738 - 15836802
Alignment:
| Q |
174 |
ttaccagcataagtagtgacaacaagttcatattcttgaccaagtttgacatcaacaagttcaac |
238 |
Q |
| |
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||||| |||||||| ||||| |||||||||||||||||||| | | ||||||||||||||||| |
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| T |
15836738 |
ttacctgcataagtggtgaccacaagttcatattcttgacccaactcaacatcaacaagttcaac |
15836802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 268 - 310
Target Start/End: Original strand, 38616834 - 38616876
Alignment:
| Q |
268 |
atctaggtgtgtgaagagaatcagtgacaccattacttctatt |
310 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||| |||| |
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|
| T |
38616834 |
atctaggtgtttgaagagaatcagtgacaccattacttttatt |
38616876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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