View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14097_high_15 (Length: 454)
Name: NF14097_high_15
Description: NF14097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14097_high_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 19 - 343
Target Start/End: Original strand, 32482897 - 32483221
Alignment:
| Q |
19 |
caatcgtcgtcgagatcggcggcgtttactatggcgatgaggtcttcttcttcagctgaagggataagttgtcaagattgtggtaaccaagctaagaaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32482897 |
caatcgtcgtcgagatcggcggcgtttactatggcgatgaggtcttcttcttcagctgaagggataagttgtcaagattgtggtaaccaagctaagaaag |
32482996 |
T |
|
| Q |
119 |
attgtcctcacatgagatgtagaacttgttgtaagagtcgtggctttcagtgtcaaactcatgttaaaagcacttgggttcctgcttctagacgccgtga |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32482997 |
attgtcctcacatgagatgtagaacttgttgtaagagtcgtggttttcagtgtcaaactcatgttaaaagcacttgggttcctgcttctagacgccgtga |
32483096 |
T |
|
| Q |
219 |
acgtcaacaacagttatcttcttctcctttacaaagagatatttctaaacgccctagagatggttcaaatgctcttgttttaactcgtaattttcataca |
318 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32483097 |
acgtcaacaacagttatcttcttctccattacaaagagatatttctaaacgccctagagatggttcaaatgctcttgtttcaactcgtaattttcataca |
32483196 |
T |
|
| Q |
319 |
ggtactattatatgaatgtgatgca |
343 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
32483197 |
ggtactattatatgaatgtgatgca |
32483221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 370 - 454
Target Start/End: Original strand, 32483245 - 32483329
Alignment:
| Q |
370 |
agttaaggactggacttgtattgtgacattaggttgaaggtgtattattcagaaacactagaagtttccgtgattgaaccttttc |
454 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||| ||||||||||| |||||| |||||| ||||||||||||||| ||||||| |
|
|
| T |
32483245 |
agttaaggactggacttgtactgtgacataaggtgtaaggtgtattaatcagaagcactagcagtttccgtgattgacccttttc |
32483329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 82 - 210
Target Start/End: Original strand, 8101876 - 8102004
Alignment:
| Q |
82 |
ataagttgtcaagattgtggtaaccaagctaagaaagattgtcctcacatgagatgtagaacttgttgtaagagtcgtggctttcagtgtcaaactcatg |
181 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||| | || ||| | ||||||||||||| |
|
|
| T |
8101876 |
ataagttgtcaagattgtgggaatcaagctaagaaagattgtcctcatatgagatgtagaacttgttgtaagagtagaggttttgattgtcaaactcatg |
8101975 |
T |
|
| Q |
182 |
ttaaaagcacttgggttcctgcttctaga |
210 |
Q |
| |
|
|||| || ||||||||||||||| ||||| |
|
|
| T |
8101976 |
ttaagagtacttgggttcctgctgctaga |
8102004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 88 - 230
Target Start/End: Complemental strand, 7418652 - 7418510
Alignment:
| Q |
88 |
tgtcaagattgtggtaaccaagctaagaaagattgtcctcacatgagatgtagaacttgttgtaagagtcgtggctttcagtgtcaaactcatgttaaaa |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||| |||||||| || |||||||||||||||||||| |||| |
|
|
| T |
7418652 |
tgtcaagattgtggtaaccaagctaagaaagattgtccacatcttagatgtagaacttgttgcaagagtcgagggtttcagtgtcaaactcatgtgaaaa |
7418553 |
T |
|
| Q |
188 |
gcacttgggttcctgcttctagacgccgtgaacgtcaacaaca |
230 |
Q |
| |
|
| ||||||||||| ||| ||| |||||| ||||| || ||||| |
|
|
| T |
7418552 |
gtacttgggttccagctgctaaacgccgcgaacggcagcaaca |
7418510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 87 - 230
Target Start/End: Complemental strand, 52767699 - 52767556
Alignment:
| Q |
87 |
ttgtcaagattgtggtaaccaagctaagaaagattgtcctcacatgagatgtagaacttgttgtaagagtcgtggctttcagtgtcaaactcatgttaaa |
186 |
Q |
| |
|
|||||| || |||||||||||||| |||||||||||| || | ||||| |||||||||||||| ||||| || |||||||||||||| |||||||| |
|
|
| T |
52767699 |
ttgtcaggactgtggtaaccaagcaaagaaagattgtatacatctaagatgcagaacttgttgtaaaagtcgagggtttcagtgtcaaacacatgttaag |
52767600 |
T |
|
| Q |
187 |
agcacttgggttcctgcttctagacgccgtgaacgtcaacaaca |
230 |
Q |
| |
|
|| ||||||||||| ||| ||| |||||||||||| |||||||| |
|
|
| T |
52767599 |
agtacttgggttcccgctgctaaacgccgtgaacgacaacaaca |
52767556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University