View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14097_high_23 (Length: 332)
Name: NF14097_high_23
Description: NF14097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14097_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 3e-76; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 130 - 328
Target Start/End: Original strand, 22922954 - 22923158
Alignment:
| Q |
130 |
aataatagtcaagcaaacaaagatacatttaaaggaacatccttatgtcaagtatattctgacatagatgtaaagtgctctggttcttgactggtaagaa |
229 |
Q |
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| T |
22922954 |
aataataatcaagcaaacaaagatacatttaaaggaacatccttatgtcaagtatgttctgacatagatgtaaagtgttctggttcttgactggtaagaa |
22923053 |
T |
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| Q |
230 |
aacattacactccatgcaccaaatatcatgtcttcg--tcgagtttctaacgccaaatatcctaa----atatcaacttgtaatgacacatcatcaagta |
323 |
Q |
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| T |
22923054 |
aactttacactcgatgcaccaaatatcatgtcttcgaatcgagtttccaatgccaaatatcctaaatatatatcaacttgtaatgacacatcatcaagta |
22923153 |
T |
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| Q |
324 |
taatc |
328 |
Q |
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|||| |
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| T |
22923154 |
aaatc |
22923158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 120 - 328
Target Start/End: Complemental strand, 22924068 - 22923858
Alignment:
| Q |
120 |
cctattacgaaataatagtcaagcaaacaaagatacatttaaaggaacatccttatgtcaagtatattctgacatagatgtaaagtgctctggttcttga |
219 |
Q |
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|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
22924068 |
cctattgcggaataatagtcaagcaaacaaagatacatttaaaggaacatccttatgtcaagtatattctgacatcgatgtaaagtgctctcgttcttgg |
22923969 |
T |
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| Q |
220 |
ctggtaagaaaacattacactccatgcaccaaatatcatgtcttc--gtcgagtttctaacgccaaatatcctaaatatcaacttgtaatgacacatcat |
317 |
Q |
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| T |
22923968 |
ctggtaagaaaactgtacactccacgtaccaaatatcatgtcgtcaaatcgagtttccaacaccaaatatcctaaatatcaacttgcaatgacacatcat |
22923869 |
T |
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| Q |
318 |
caagtataatc |
328 |
Q |
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||||| |||| |
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| T |
22923868 |
gaagtaaaatc |
22923858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 22922805 - 22922915
Alignment:
| Q |
17 |
aaaaagttaggctgagtctattactgtttgattatgacaccatt---------gtttgattagtttcacacccgctcgtgcagagtgtagactccaaagg |
107 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
22922805 |
aaaaagttaggctgagtctattactgtttgattatgataccattgtttgattagtttgattagtttcacacccactcgtgcagagtgtagactcaaaagg |
22922904 |
T |
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| Q |
108 |
gatgataagtc |
118 |
Q |
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||||||||||| |
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| T |
22922905 |
gatgataagtc |
22922915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 22924204 - 22924148
Alignment:
| Q |
17 |
aaaaagttaggctgagtctattactgtttgattatgacaccattgtttgattagttt |
73 |
Q |
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|||||||| || |||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
22924204 |
aaaaagttgggatgagtctactattgtttgattatgacaccattgtttgattagttt |
22924148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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