View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14097_high_27 (Length: 280)
Name: NF14097_high_27
Description: NF14097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14097_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 136; Significance: 5e-71; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 99 - 264
Target Start/End: Original strand, 5438677 - 5438839
Alignment:
| Q |
99 |
ttttagcttttggggatttagaaaaattacctccaacaccagccaaaagcacaggaaaaacgaacttgtagcgcttaataaagggttccttaggtagcgg |
198 |
Q |
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| T |
5438677 |
ttttagcttttggggatttagaaaaattacctccaacaccagccaaaagcacaggaaaaaagaacttgtagtgcttaataaagggttccttaggtagcgg |
5438776 |
T |
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| Q |
199 |
cggcggaggaggaggagccgtttgtgcccccatcgacgacggcgaagagaattcgttcgatttctg |
264 |
Q |
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| T |
5438777 |
cggc---ggaggaggagccgtttgtgcccccatcgacgactgcgaagagaactcgttcgatttctg |
5438839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 138 - 264
Target Start/End: Original strand, 5432226 - 5432352
Alignment:
| Q |
138 |
cagccaaaagcacaggaaaaacgaacttgtagcgcttaataaagggttccttaggtagcggcggcggaggaggaggagccgtttgtgcccccatcgacga |
237 |
Q |
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| T |
5432226 |
cagccaatagcataggccaaacgaacttgtagcgcttaatgaagggttccttaggcagcggcggaggtggaggaggagccgtttgagtccccattgacgg |
5432325 |
T |
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| Q |
238 |
cggcgaagagaattcgttcgatttctg |
264 |
Q |
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| T |
5432326 |
cggcgaagagaattcgttcgatttctg |
5432352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 5438578 - 5438640
Alignment:
| Q |
1 |
tgaactatctagtacagcaacaagtcaaataaatcaaaccccatttcacaaactcaccaatca |
63 |
Q |
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| T |
5438578 |
tgaactatctagtacagcaacaagtcaaagaaatcaaaccccatttcacaaactcaccaatca |
5438640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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