View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14097_high_4 (Length: 629)

Name: NF14097_high_4
Description: NF14097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14097_high_4
NF14097_high_4
[»] chr6 (39 HSPs)
chr6 (1-629)||(26811618-26812248)
chr6 (17-614)||(26617746-26618344)
chr6 (17-614)||(26723674-26724272)
chr6 (404-627)||(26949772-26949995)
chr6 (408-627)||(27214528-27214750)
chr6 (408-627)||(27234478-27234700)
chr6 (404-627)||(25071770-25071993)
chr6 (404-627)||(26848771-26848994)
chr6 (404-489)||(26959415-26959500)
chr6 (408-627)||(25579830-25580049)
chr6 (408-627)||(26142976-26143195)
chr6 (404-489)||(26635939-26636024)
chr6 (404-489)||(26741905-26741990)
chr6 (408-627)||(25538651-25538870)
chr6 (422-573)||(27337936-27338087)
chr6 (422-573)||(27398676-27398827)
chr6 (536-627)||(28181225-28181316)
chr6 (404-627)||(28185477-28185700)
chr6 (404-627)||(28297566-28297789)
chr6 (404-627)||(28514284-28514507)
chr6 (408-573)||(26056091-26056256)
chr6 (408-573)||(26076061-26076226)
chr6 (404-494)||(26975296-26975386)
chr6 (536-627)||(28227061-28227152)
chr6 (536-629)||(28325590-28325683)
chr6 (447-627)||(28242915-28243095)
chr6 (536-627)||(28234675-28234765)
chr6 (404-474)||(26937370-26937440)
chr6 (447-493)||(28234808-28234854)
chr6 (439-494)||(24715829-24715884)
chr6 (408-494)||(25481986-25482072)
chr6 (408-573)||(26656154-26656319)
chr6 (408-573)||(26762125-26762290)
chr6 (553-627)||(27677616-27677690)
chr6 (553-627)||(27679057-27679131)
chr6 (532-590)||(29826175-29826233)
chr6 (433-489)||(27664999-27665055)
chr6 (447-499)||(28181353-28181405)
chr6 (447-499)||(28227189-28227241)
[»] chr1 (4 HSPs)
chr1 (3-180)||(26136432-26136606)
chr1 (408-495)||(28127523-28127610)
chr1 (408-495)||(28164207-28164294)
chr1 (448-627)||(268241-268420)
[»] chr2 (2 HSPs)
chr2 (404-558)||(17993537-17993691)
chr2 (532-572)||(3279857-3279897)
[»] scaffold0038 (6 HSPs)
scaffold0038 (536-627)||(34836-34927)
scaffold0038 (536-627)||(27559-27650)
scaffold0038 (536-629)||(116905-116998)
scaffold0038 (447-627)||(43077-43257)
scaffold0038 (447-493)||(34970-35016)
scaffold0038 (447-499)||(27687-27739)
[»] scaffold0019 (1 HSPs)
scaffold0019 (439-627)||(58170-58358)
[»] chr4 (7 HSPs)
chr4 (496-629)||(5090899-5091032)
chr4 (407-492)||(18699243-18699328)
chr4 (448-492)||(18655361-18655405)
chr4 (448-492)||(18723969-18724013)
chr4 (448-492)||(18731388-18731432)
chr4 (536-627)||(18655449-18655540)
chr4 (407-492)||(18679410-18679495)
[»] chr8 (1 HSPs)
chr8 (448-627)||(29273667-29273846)


Alignment Details
Target: chr6 (Bit Score: 424; Significance: 0; HSPs: 39)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 629
Target Start/End: Complemental strand, 26812248 - 26811618
Alignment:
Q  1 tcatcacagccaacatccagaagtgacattacatgcaacagtcgagactcaagtcccacaacagggtgatcagcaacttctaaaagaccacggttgatct 100  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26812248 tcatcacacccaacatccagaagtgacattacatgcagcagtcgagactcaagtcccacaatagggtgatcagcaacttctaaaagaccacggttgatct 26812149  T
Q  101 ttttggaaatctctgtaactatctctttaataaactcatattcatatgcatctttcctgcgcccaatcagacaagtttgagtaaatgcatcagaatcaca 200  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26812148 ttttggaaatctctgtaactatcttcttaataaactcatattcatatgcatctttcctgcgcccaatcagacaagtttgagtaaatgcatcagaatcaca 26812049  T
Q  201 attacacccatatattgtgatgatgtgatattacaattcaaattgtttcaacgtacaatgaataatctttctaaacatgaaagaaaactgtaaaaacata 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||| |||||| |||||  |||||| |||    
T  26812048 attacacccatatattgtgatgatgtgatattacaattcaaattgtttcaacatacaaagaacaatctttctaaagatgaaataaaaccctaaaaagata 26811949  T
Q  301 tctttcctttttaaaatttaaggatgaaatgaatcgtcaattgtaattgaagacaaacaataaacataagaaaactaaataagagtgaaatgaaga--ag 398  Q
    |||||||||||||| |||||||| | |||||||| |||||||| |||||||||||||||||| |||||| |||   ||||||||||||||||||||  ||    
T  26811948 tctttcctttttaacatttaaggctaaaatgaattgtcaattgaaattgaagacaaacaatatacataaaaaagaaaaataagagtgaaatgaagaatag 26811849  T
Q  399 cgtacttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttc 498  Q
    | |||||||||||| |||||||||||||  || |||||| ||||||| ||||||||||||||||||| |||||||||| |||||||||||||||| ||||    
T  26811848 cttacttgaaatgaaagccagataagttaccaacttggttaagagctatcttccatttctgcaaccgatccatgttttccttgttattttggaacatttc 26811749  T
Q  499 ttcaaactcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttcc 598  Q
    ||||||||||| ||||||| |||||||| | ||| | |||||||| |||||||||||||||||| ||||||||||||| ||||| || ||||  ||||||    
T  26811748 ttcaaactcagtaagtgcttcaccatacttgttattttgatgtcgcacgtgagaaggttccacaccatagaaaactggtagaacaaggcgacctttttcc 26811649  T
Q  599 ttgaagtagtgaatgatatggacaagttcat 629  Q
    |||||||||| |||||| |||||||| ||||    
T  26811648 ttgaagtagttaatgatgtggacaagctcat 26811618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 17 - 614
Target Start/End: Complemental strand, 26618344 - 26617746
Alignment:
Q  17 ccagaagtgacattacatgcaacagtcgagactcaagtcccacaacagggtgatcagcaacttctaaaagaccacggttgatctttttggaaatctctgt 116  Q
    ||||||| ||| ||||| | | ||||||||| |||||||| |||||  |||||||||||||||||||||||||||  |||||||| ||  ||||||||||    
T  26618344 ccagaagcgactttacacgtagcagtcgagagtcaagtccaacaactaggtgatcagcaacttctaaaagaccacaattgatcttgttccaaatctctgt 26618245  T
Q  117 aactatctctttaataaactcatattcatatgcatctttcctgcgcccaatcagacaagtttgagtaaatgcatcagaatcacaattacacccatatatt 216  Q
    ||||||||  ||||||||||| ||||||||| |||||| ||||||||||| ||||||||||| ||||||| |||||||||| |||| ||| |||| ||||    
T  26618244 aactatcttcttaataaactcgtattcatattcatcttccctgcgcccaaccagacaagtttaagtaaatacatcagaatctcaatcacagccatgtatt 26618145  T
Q  217 gtgatgatg-tgatattacaattcaaattgtttcaacgtacaatgaataatctttctaaacatgaaagaaaactgtaaaaacatatctttcctttttaaa 315  Q
    | ||||||| ||||||||  || |||||| ||||||| | ||| ||| || |||||||||||||||||||||||  |||||||||| ||||||||||||     
T  26618144 gcgatgatgatgatattatgatacaaattttttcaacatgcaaagaacaaactttctaaacatgaaagaaaactcaaaaaacatatatttcctttttaac 26618045  T
Q  316 atttaaggatgaaatgaatcgtcaattgtaattgaagacaaacaataaacataagaaaactaaataagagtgaaatgaagaagcgtacttgaaatgatag 415  Q
    || ||||  | |||||||| |||||||| ||||||||||||||||||  |||||||||   |||||||||||||||||||||| || |||||||||||||    
T  26618044 atgtaagtgtaaaatgaattgtcaattgaaattgaagacaaacaatatccataagaaagaaaaataagagtgaaatgaagaagtgtgcttgaaatgatag 26617945  T
Q  416 ccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaagtg 515  Q
    |||||||||||   |||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  26617944 ccagataagttataagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttggaacctttcttcaaactcagtaagtg 26617845  T
Q  516 ctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatga 614  Q
    || |||||||||| ||| | | ||||||||| | ||||||||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||||    
T  26617844 cttcaccatacctgttattgtaatgtcgtacttcagaaggttccacatcatagaaaactggaagaacaaggcgactattttcctttaagtagtgaatga 26617746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 17 - 614
Target Start/End: Complemental strand, 26724272 - 26723674
Alignment:
Q  17 ccagaagtgacattacatgcaacagtcgagactcaagtcccacaacagggtgatcagcaacttctaaaagaccacggttgatctttttggaaatctctgt 116  Q
    ||||||| ||| ||||| | | ||||||||| |||||||| |||||  |||||||||||||||||||||||||||  |||||||| ||  ||||||||||    
T  26724272 ccagaagcgactttacacgtagcagtcgagagtcaagtccaacaactaggtgatcagcaacttctaaaagaccacaattgatcttgttccaaatctctgt 26724173  T
Q  117 aactatctctttaataaactcatattcatatgcatctttcctgcgcccaatcagacaagtttgagtaaatgcatcagaatcacaattacacccatatatt 216  Q
    ||||||||  ||||||||||| ||||||||| |||||| ||||||||||| ||||||||||| ||||||| |||||||||| |||| ||| |||| ||||    
T  26724172 aactatcttcttaataaactcgtattcatattcatcttccctgcgcccaaccagacaagtttaagtaaatacatcagaatctcaatcacagccatgtatt 26724073  T
Q  217 gtgatgatg-tgatattacaattcaaattgtttcaacgtacaatgaataatctttctaaacatgaaagaaaactgtaaaaacatatctttcctttttaaa 315  Q
    | ||||||| ||||||||  || |||||| ||||||| | ||| ||| || |||||||||||||||||||||||  |||||||||| ||||||||||||     
T  26724072 gcgatgatgatgatattatgatacaaattttttcaacatgcaaagaacaaactttctaaacatgaaagaaaactcaaaaaacatatatttcctttttaac 26723973  T
Q  316 atttaaggatgaaatgaatcgtcaattgtaattgaagacaaacaataaacataagaaaactaaataagagtgaaatgaagaagcgtacttgaaatgatag 415  Q
    || ||||  | |||||||| |||||||| ||||||||||||||||||  |||||||||   |||||||||||||||||||||| || |||||||||||||    
T  26723972 atgtaagtgtaaaatgaattgtcaattgaaattgaagacaaacaatatccataagaaagaaaaataagagtgaaatgaagaagtgtgcttgaaatgatag 26723873  T
Q  416 ccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaagtg 515  Q
    |||||||||||   |||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  26723872 ccagataagttataagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttggaacctttcttcaaactcagtaagtg 26723773  T
Q  516 ctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatga 614  Q
    || |||||||||| ||| | | ||||||||| | ||||||||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||||    
T  26723772 cttcaccatacctgttattgtaatgtcgtacttcagaaggttccacatcatagaaaactggaagaacaaggcgactattttcctttaagtagtgaatga 26723674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 404 - 627
Target Start/End: Complemental strand, 26949995 - 26949772
Alignment:
Q  404 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaa 503  Q
    |||||||| |||||||||||||  ||| ||| ||  |||||| ||||||||||| ||||||||||||||||||| ||| | ||||||||||| ||||||     
T  26949995 ttgaaatggtagccagataagtcagcaactttgttcagagctatcttccatttcagcaaccgctccatgttttttttgctcttttggaacctctcttcat 26949896  T
Q  504 actcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaa 603  Q
     || || ||||||| ||||||| |||| | |||||||||| |||||||||||||| ||||||||||||||||| ||||| || ||||  |||||||||||    
T  26949895 gcttagcaagtgcttcaccataactataattctgatgtcgcacgtgagaaggttctacatcatagaaaactggcagaacaaggcgacctttttccttgaa 26949796  T
Q  604 gtagtgaatgatatggacaagttc 627  Q
    ||||||||||||||||||||||||    
T  26949795 gtagtgaatgatatggacaagttc 26949772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 408 - 627
Target Start/End: Complemental strand, 27214750 - 27214528
Alignment:
Q  408 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactc 507  Q
    ||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||  ||     
T  27214750 aatgatagccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctcttcatgctt 27214651  T
Q  508 agaaagtgctgcaccatacc---tattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaag 604  Q
    || ||| ||| ||||||| |   | ||  || ||||||| | |||||||||||| ||  |||||||||| || ||||| || ||||  ||||||||| ||    
T  27214650 agcaagcgcttcaccataactgttgttgttcagatgtcgcaagtgagaaggttcaacgccatagaaaacaggtagaacaaggcgacctttttccttggag 27214551  T
Q  605 tagtgaatgatatggacaagttc 627  Q
     | ||| |||| |||||||||||    
T  27214550 caatgagtgatgtggacaagttc 27214528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 408 - 627
Target Start/End: Original strand, 27234478 - 27234700
Alignment:
Q  408 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactc 507  Q
    ||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||  ||     
T  27234478 aatgatagccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctcttcatgctt 27234577  T
Q  508 agaaagtgctgcaccatacc---tattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaag 604  Q
    || ||| ||| ||||||| |   | ||  || ||||||| | |||||||||||| ||  |||||||||| || ||||| || ||||  ||||||||| ||    
T  27234578 agcaagcgcttcaccataactgttgttgttcagatgtcgcaagtgagaaggttcaacgccatagaaaacaggtagaacaaggcgacctttttccttggag 27234677  T
Q  605 tagtgaatgatatggacaagttc 627  Q
     | ||| |||| |||||||||||    
T  27234678 caatgagtgatgtggacaagttc 27234700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 404 - 627
Target Start/End: Complemental strand, 25071993 - 25071770
Alignment:
Q  404 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaa 503  Q
    ||||||||||  ||||||||||| ||||||| || ||||||| |||||||| || ||||||||||||||| || |||||||||||| ||||  ||||||     
T  25071993 ttgaaatgatgtccagataagttagcagcttcgttaagagctttcttccatgtcagcaaccgctccatgtgttccttgttattttgaaacccctcttcat 25071894  T
Q  504 actcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaa 603  Q
     || || || || | ||||||| || | | || | | ||| || || ||||||||     ||||||||| ||| ||||| || |||||||||||||||||    
T  25071893 gcttagcaaatgattcaccataactgtcattcagttttcgcacctgcgaaggttcggtgccatagaaaattggtagaacaaggcgactcttttccttgaa 25071794  T
Q  604 gtagtgaatgatatggacaagttc 627  Q
    |||||||||||| |||||||||||    
T  25071793 gtagtgaatgatgtggacaagttc 25071770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 404 - 627
Target Start/End: Complemental strand, 26848994 - 26848771
Alignment:
Q  404 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaa 503  Q
    |||||||| | |||||||||||| ||||| |||| ||||||| ||||||||||  |||| ||||||||| ||| |||||||||||| |||   ||||||     
T  26848994 ttgaaatggtggccagataagttagcagcatggttaagagctttcttccatttacgcaaacgctccatgctttccttgttattttgaaacacctcttcat 26848895  T
Q  504 actcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaa 603  Q
     || || ||||||| ||||||| ||| || |||||||||| || ||||||||||| |   |||||||||| |||| ||| |  | || |||||||||| |    
T  26848894 gcttagcaagtgcttcaccataactactattctgatgtcgcacatgagaaggttctatgccatagaaaacaggaataaccatgctacccttttccttgga 26848795  T
Q  604 gtagtgaatgatatggacaagttc 627  Q
    | | |||||||| |||||||||||    
T  26848794 gcaatgaatgatgtggacaagttc 26848771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 404 - 489
Target Start/End: Complemental strand, 26959500 - 26959415
Alignment:
Q  404 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttg 489  Q
    |||||||| | |||||||||||| |||||||||| ||||||| ||||||||||| |||||||||||||||||| |||| |||||||    
T  26959500 ttgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccgctccatgttttccttgctattttg 26959415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 408 - 627
Target Start/End: Complemental strand, 25580049 - 25579830
Alignment:
Q  408 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactc 507  Q
    |||||||||| || ||||| |||||||||  ||||||| |||||||||   |||| |||||||||||||||| ||||||||| ||||| ||||||  ||     
T  25580049 aatgatagccggacaagttagcagcttgggtaagagctatcttccattgacgcaatcgctccatgtttttctcgttattttgaaacctctcttcatgctt 25579950  T
Q  508 agaaag-tgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagta 606  Q
    || ||| | || ||||||| ||   | |||||||||||| ||||| ||||||||||||||||||||| || |  || |  | |||||||  |||| || |    
T  25579949 agtaagatact-caccataactcccactctgatgtcgtatgtgagtaggttccacatcatagaaaacgggcaatactaagcaactctttgtcttgtagca 25579851  T
Q  607 gtgaatgatatggacaagttc 627  Q
    ||||||||| |||||||||||    
T  25579850 gtgaatgatgtggacaagttc 25579830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 408 - 627
Target Start/End: Complemental strand, 26143195 - 26142976
Alignment:
Q  408 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactc 507  Q
    |||||||||| || ||||| |||||||||  ||||||| |||||||||   |||| |||||||||||||||| ||||||||| ||||| ||||||  ||     
T  26143195 aatgatagccggacaagttagcagcttggataagagctatcttccattgacgcaatcgctccatgtttttctcgttattttgaaacctctcttcatgctt 26143096  T
Q  508 agaaag-tgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagta 606  Q
    || ||| |||| |||||||  |   | |||||| ||||| ||||| ||||||||||||||||||||| ||||  || |  | |||||||  |||| || |    
T  26143095 agtaagatgct-caccataaatcccactctgatttcgtatgtgagtaggttccacatcatagaaaacgggaaatactaagcaactctttgtcttgtagca 26142997  T
Q  607 gtgaatgatatggacaagttc 627  Q
    ||||||||| |||||||||||    
T  26142996 gtgaatgatgtggacaagttc 26142976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 404 - 489
Target Start/End: Complemental strand, 26636024 - 26635939
Alignment:
Q  404 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttg 489  Q
    |||||||| | |||||||||||| |||||||||| ||||||| ||||||||||| |||||| ||||||||||| |||| |||||||    
T  26636024 ttgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccactccatgttttccttgctattttg 26635939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 404 - 489
Target Start/End: Complemental strand, 26741990 - 26741905
Alignment:
Q  404 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttg 489  Q
    |||||||| | |||||||||||| |||||||||| ||||||| ||||||||||| |||||| ||||||||||| |||| |||||||    
T  26741990 ttgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccactccatgttttccttgctattttg 26741905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 408 - 627
Target Start/End: Complemental strand, 25538870 - 25538651
Alignment:
Q  408 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactc 507  Q
    |||||||||| || ||||| |||||||||  ||||||| |||||||||   |||| ||||||||||||||||  |||||||| ||||| ||||||  ||     
T  25538870 aatgatagccggacaagttagcagcttggataagagctatcttccattgacgcaatcgctccatgtttttctcattattttgaaacctctcttcatgctt 25538771  T
Q  508 ag-aaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagta 606  Q
    || ||| |||| ||||||| ||   | ||||||||||||  |||| ||||||||||||||||||||| || |  || |  | |||||||  |||| || |    
T  25538770 agtaaaatgct-caccataactcccactctgatgtcgtaactgagtaggttccacatcatagaaaacgggcaatactaagcaactctttgtcttgtagca 25538672  T
Q  607 gtgaatgatatggacaagttc 627  Q
    ||||||||| |||||||||||    
T  25538671 gtgaatgatctggacaagttc 25538651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 422 - 573
Target Start/End: Original strand, 27337936 - 27338087
Alignment:
Q  422 aagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaag-tgctgca 520  Q
    ||||| |||||||||  ||||||  |||||||||||| ||||| ||||||||||| |||||||||||||||| | ||||||  || || ||| |||| ||    
T  27337936 aagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaacttatcttcatgcttagtaagatgct-ca 27338034  T
Q  521 ccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaac 573  Q
    ||||| ||   |||||||||||||||||||| ||| ||| || ||||||||||    
T  27338035 ccataactcccagtctgatgtcgtacgtgagtaggatccgcaccatagaaaac 27338087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 422 - 573
Target Start/End: Original strand, 27398676 - 27398827
Alignment:
Q  422 aagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaag-tgctgca 520  Q
    ||||| |||||||||  ||||||  |||||||||||| ||||| ||||||||||| |||||||||||||||| | ||||||  || || ||| |||| ||    
T  27398676 aagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaacttatcttcatgcttagtaagatgct-ca 27398774  T
Q  521 ccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaac 573  Q
    ||||| ||   |||||||||||||||||||| ||| ||| || ||||||||||    
T  27398775 ccataactcccagtctgatgtcgtacgtgagtaggatccgcaccatagaaaac 27398827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 536 - 627
Target Start/End: Complemental strand, 28181316 - 28181225
Alignment:
Q  536 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttc 627  Q
    |||||||| |||||||||||||||||||||||||||| ||| | ||| ||||| |   ||||||||||| |||||||||| |||||||||||    
T  28181316 tgatgtcgcacgtgagaaggttccacatcatagaaaattggcaaaactagacgcccgctttccttgaagcagtgaatgatgtggacaagttc 28181225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 404 - 627
Target Start/End: Complemental strand, 28185700 - 28185477
Alignment:
Q  404 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaa 503  Q
    |||||||| | |||||| ||||| |||| |||   ||||||  |||||||||||||||||| ||||||| | | |||||||||||||||| | | |  |     
T  28185700 ttgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccatgctatccttgttattttggaacttctttatat 28185601  T
Q  504 actcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaa 603  Q
      |||   ||||||  |||||| ||    || |||||||| |||||||||||||||||||||||||||| ||| | ||| ||||| |   ||||||||||    
T  28185600 gatcatccagtgctttaccataactgcccgtgtgatgtcgcacgtgagaaggttccacatcatagaaaattggcaaaactagacgcccgctttccttgaa 28185501  T
Q  604 gtagtgaatgatatggacaagttc 627  Q
    | ||| |||||| |||||||||||    
T  28185500 gcagttaatgatgtggacaagttc 28185477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 404 - 627
Target Start/End: Original strand, 28297566 - 28297789
Alignment:
Q  404 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaa 503  Q
    |||||||| | |||||| ||||| |||| |||   ||||||  |||||||||||||||||| ||||||||| |||||||||||||||||| | |||  |     
T  28297566 ttgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccatgttattcttgttattttggaacttctctatat 28297665  T
Q  504 actcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaa 603  Q
      |||   ||||||  | |||| ||   |   |||||||| || |||||||||||||||||||| ||||  || | ||| ||||| ||  ||||||||||    
T  28297666 gatcatccagtgctttagcataacttccatgttgatgtcgcacatgagaaggttccacatcataaaaaatcggcaaaactagacggctactttccttgaa 28297765  T
Q  604 gtagtgaatgatatggacaagttc 627  Q
    | |||||||||| |||||||||||    
T  28297766 gcagtgaatgatgtggacaagttc 28297789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 404 - 627
Target Start/End: Complemental strand, 28514507 - 28514284
Alignment:
Q  404 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaa 503  Q
    |||||||| | |||||| ||||| |||| |||   ||||||  |||||||||||||||||| ||||||||| |||||||||||||||||| | |||  |     
T  28514507 ttgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccatgttattcttgttattttggaacttctctatat 28514408  T
Q  504 actcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaa 603  Q
      |||   ||||||  | |||| ||   |   |||||||| || |||||||||||||||||||| ||||  || | ||| ||||| ||  ||||||||||    
T  28514407 gatcatccagtgctttagcataacttccatgttgatgtcgcacatgagaaggttccacatcataaaaaatcggcaaaactagacggctactttccttgaa 28514308  T
Q  604 gtagtgaatgatatggacaagttc 627  Q
    | |||||||||| |||||||||||    
T  28514307 gcagtgaatgatgtggacaagttc 28514284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 408 - 573
Target Start/End: Complemental strand, 26056256 - 26056091
Alignment:
Q  408 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactc 507  Q
    |||||||||| || ||||| ||||||||   ||||||  |||||||||   |||| |||||||||||||||| ||||||||||||||  |||| |  ||     
T  26056256 aatgatagccggacaagttagcagcttgagtaagagccatcttccattgacgcaatcgctccatgtttttctcgttattttggaacccctctttatgctt 26056157  T
Q  508 agaaag-tgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaac 573  Q
    || ||| |||| ||||||| ||   | |||||||||||| ||||| |||||||||||||||||||||    
T  26056156 agtaagatgct-caccataactcccactctgatgtcgtatgtgagtaggttccacatcatagaaaac 26056091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 408 - 573
Target Start/End: Complemental strand, 26076226 - 26076061
Alignment:
Q  408 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactc 507  Q
    |||||||||| || ||||| ||||||||   ||||||  |||||||||   |||| |||||||||||||||| ||||||||||||||  |||| |  ||     
T  26076226 aatgatagccggacaagttagcagcttgagtaagagccatcttccattgacgcaatcgctccatgtttttctcgttattttggaacccctctttatgctt 26076127  T
Q  508 agaaag-tgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaac 573  Q
    || ||| |||| ||||||| ||   | |||||||||||| ||||| |||||||||||||||||||||    
T  26076126 agtaagatgct-caccataactcccactctgatgtcgtatgtgagtaggttccacatcatagaaaac 26076061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 404 - 494
Target Start/End: Complemental strand, 26975386 - 26975296
Alignment:
Q  404 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacc 494  Q
    |||||||| | |||||||||||| |||||||||| ||||||| ||||||||||  |||||||||||| |||||  || |||||||| ||||    
T  26975386 ttgaaatggtggccagataagttagcagcttggttaagagctttcttccatttaagcaaccgctccaagttttcatttttattttgaaacc 26975296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 536 - 627
Target Start/End: Complemental strand, 28227152 - 28227061
Alignment:
Q  536 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttc 627  Q
    |||||||| || ||||||||||||||||||||||||| ||| | ||| || || |  |||||||||||| | |||||||| |||||||||||    
T  28227152 tgatgtcgcacatgagaaggttccacatcatagaaaattggcaaaacaaggcgccgattttccttgaagcaatgaatgatgtggacaagttc 28227061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 536 - 629
Target Start/End: Complemental strand, 28325683 - 28325590
Alignment:
Q  536 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcat 629  Q
    |||||||| |||||||||||||||||||| |||||||||||   ||| || || |  ||||| |||||| ||||||| || |||||||||||||    
T  28325683 tgatgtcgcacgtgagaaggttccacatcgtagaaaactggctaaactaggcgcccattttctttgaagcagtgaataatgtggacaagttcat 28325590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 447 - 627
Target Start/End: Complemental strand, 28243095 - 28242915
Alignment:
Q  447 tcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaagtgctgcaccatacctattagtctgatgtcgtac 546  Q
    |||||||||||||||||| ||||||||| | | || ||||||||||| | ||   |  |||||  ||||||  |||||| ||   | |||||||||  ||    
T  28243095 tcttccatttctgcaacctctccatgttatccgtgctattttggaacttctcaatatgctcagccagtgctttaccataactgccaatctgatgtctcac 28242996  T
Q  547 gtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttc 627  Q
    || ||||||||||||||||||||||| ||| | ||| || || |  |||| |||| || |||||||||| |||||||||||    
T  28242995 gttagaaggttccacatcatagaaaattggcaaaactaggcgtccatttttcttgcagcagtgaatgatgtggacaagttc 28242915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 536 - 627
Target Start/End: Complemental strand, 28234765 - 28234675
Alignment:
Q  536 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttc 627  Q
    |||||||| |||||||||||||||||||||||||||| ||| | ||| || || || ||||||| |||| | | |||||| |||||||||||    
T  28234765 tgatgtcgcacgtgagaaggttccacatcatagaaaattggcaaaactaggcgtctattttcctcgaagca-taaatgatgtggacaagttc 28234675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 474
Target Start/End: Complemental strand, 26937440 - 26937370
Alignment:
Q  404 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtt 474  Q
    |||||||| | |||||| ||||| || ||||||| ||||||| ||||||||||| |||||| |||||||||    
T  26937440 ttgaaatggtggccagacaagtttgccgcttggttaagagctatcttccatttccgcaacctctccatgtt 26937370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 447 - 493
Target Start/End: Complemental strand, 28234854 - 28234808
Alignment:
Q  447 tcttccatttctgcaaccgctccatgtttttcttgttattttggaac 493  Q
    |||||||||||||||||| ||||||||| | ||||||||||||||||    
T  28234854 tcttccatttctgcaacctctccatgttatccttgttattttggaac 28234808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 494
Target Start/End: Complemental strand, 24715884 - 24715829
Alignment:
Q  439 aagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacc 494  Q
    ||||||||||||| ||||| ||||||| ||||||| || |||||||||||| ||||    
T  24715884 aagagctgtcttctatttcagcaaccggtccatgtgttccttgttattttgaaacc 24715829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 408 - 494
Target Start/End: Complemental strand, 25482072 - 25481986
Alignment:
Q  408 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacc 494  Q
    |||||||||| || || || ||||||||   ||||||  |||||||||   |||| |||||||||||||||| ||||||||||||||    
T  25482072 aatgatagccggacaaattagcagcttgagtaagagccatcttccattgacgcaatcgctccatgtttttctcgttattttggaacc 25481986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 408 - 573
Target Start/End: Complemental strand, 26656319 - 26656154
Alignment:
Q  408 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactc 507  Q
    |||| |||||||| ||||| ||||||| |   |||||  ||||||||| || ||||| || |||||||| |||||||||||||||| | | ||||  ||     
T  26656319 aatggtagccagacaagttggcagctttggtcagagccatcttccattgctccaacctctgcatgttttccttgttattttggaacttcttttcatgctt 26656220  T
Q  508 agaaag-tgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaac 573  Q
    || ||| |||| |||| || ||   |||||||||||||| ||||| ||| |||||| ||||||||||    
T  26656219 agtaagatgct-caccgtaacttccagtctgatgtcgtatgtgagtaggatccacaccatagaaaac 26656154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 408 - 573
Target Start/End: Complemental strand, 26762290 - 26762125
Alignment:
Q  408 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactc 507  Q
    |||| |||||||| ||||| ||||||| |   |||||  ||||||||| || ||||| || |||||||| |||||||||||||||| | | ||||  ||     
T  26762290 aatggtagccagacaagttggcagctttggtcagagccatcttccattgctccaacctctgcatgttttccttgttattttggaacttcttttcatgctt 26762191  T
Q  508 agaaag-tgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaac 573  Q
    || ||| |||| |||| || ||   |||||||||||||| ||||| ||| |||||| ||||||||||    
T  26762190 agtaagatgct-caccgtaacttccagtctgatgtcgtatgtgagtaggatccacaccatagaaaac 26762125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 553 - 627
Target Start/End: Original strand, 27677616 - 27677690
Alignment:
Q  553 aggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttc 627  Q
    |||||||||| || ||||||| || |||||||| |||| ||||  |||| || |||||||||| |||||||||||    
T  27677616 aggttccacagcaaagaaaacaggcagaacgaggcgaccctttgtcttgtagcagtgaatgatgtggacaagttc 27677690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 553 - 627
Target Start/End: Complemental strand, 27679131 - 27679057
Alignment:
Q  553 aggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttc 627  Q
    |||||||||| || ||||||| || |||||||| |||| ||||  |||| || |||||||||| |||||||||||    
T  27679131 aggttccacaccaaagaaaacaggcagaacgaggcgaccctttgtcttgtagcagtgaatgatgtggacaagttc 27679057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 532 - 590
Target Start/End: Complemental strand, 29826233 - 29826175
Alignment:
Q  532 agtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgac 590  Q
    |||||||||||| || |||||||| ||||||||||||||||  || | |||||||||||    
T  29826233 agtctgatgtcgcacatgagaaggatccacatcatagaaaataggcaaaacgagacgac 29826175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 433 - 489
Target Start/End: Original strand, 27664999 - 27665055
Alignment:
Q  433 ttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttg 489  Q
    ||||| |||||||  |||||||||| |||||||||||||||||| | ||| ||||||    
T  27664999 ttggtgaagagcttccttccatttcagcaaccgctccatgttttccatgtcattttg 27665055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 447 - 499
Target Start/End: Complemental strand, 28181405 - 28181353
Alignment:
Q  447 tcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttct 499  Q
    ||||||||||||||||||  |||||| | | |||||||||||||||||| |||    
T  28181405 tcttccatttctgcaacctatccatgctatgcttgttattttggaacctctct 28181353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 447 - 499
Target Start/End: Complemental strand, 28227241 - 28227189
Alignment:
Q  447 tcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttct 499  Q
    ||||||||||||||||||  |||||| | | |||||||||||||||||| |||    
T  28227241 tcttccatttctgcaacctatccatgctatgcttgttattttggaacctctct 28227189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 8e-35; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 3 - 180
Target Start/End: Complemental strand, 26136606 - 26136432
Alignment:
Q  3 atcacagccaacatccagaagtgacattacatgcaacagtcgagactcaagtcccacaacagggtgatcagcaacttctaaaagaccacggttgatcttt 102  Q
    ||||||| ||||||| ||||||||| |||| |||| |||||||||||| || ||   ||| |||||||| ||||| | ||||||| |||||||||||||     
T  26136606 atcacagtcaacatctagaagtgactttacttgcagcagtcgagactcgagccc---aacggggtgatcggcaacatgtaaaagaacacggttgatcttg 26136510  T
Q  103 ttggaaatctctgtaactatctctttaataaactcatattcatatgcatctttcctgcgcccaatcagacaagtttga 180  Q
    || |||||| ||||||||||||  ||||||||||||||||| ||| | |||||||||||||||| |||| ||||||||    
T  26136509 tttgaaatcactgtaactatcttcttaataaactcatattcgtattcttctttcctgcgcccaaccagataagtttga 26136432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 408 - 495
Target Start/End: Original strand, 28127523 - 28127610
Alignment:
Q  408 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacct 495  Q
    |||| ||||| || ||||| |||||||||   |||||| |||||||||  ||||| ||||||||||||||||||||||||||||||||    
T  28127523 aatggtagccggacaagttagcagcttgggttagagctatcttccattggtgcaatcgctccatgtttttcttgttattttggaacct 28127610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 408 - 495
Target Start/End: Original strand, 28164207 - 28164294
Alignment:
Q  408 aatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacct 495  Q
    |||| ||||| || ||||| |||||||||   |||||| |||||||||  ||||| ||||||||||||||||||||||||||||||||    
T  28164207 aatggtagccggacaagttagcagcttgggttagagctatcttccattggtgcaatcgctccatgtttttcttgttattttggaacct 28164294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 448 - 627
Target Start/End: Original strand, 268241 - 268420
Alignment:
Q  448 cttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaagtgctgcaccatacctattagtctgatgtcgtacg 547  Q
    ||||||||  |||||||||||||||||||||||| |||||||||| || |||||   || ||  ||   | ||||||| ||   | | |||||||||| |    
T  268241 cttccattgatgcaaccgctccatgtttttcttgctattttggaaactctcttcgtgcttagtgagatgttcaccataactcccactttgatgtcgtatg 268340  T
Q  548 tgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttc 627  Q
    |||| ||| |||||  ||||||| || || | || |||||||| ||||| |||| || |||||||||| |||||||||||    
T  268341 tgagtaggatccacgccatagaagacgggcaaaatgagacgaccctttttcttgtagcagtgaatgatgtggacaagttc 268420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 5e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 404 - 558
Target Start/End: Original strand, 17993537 - 17993691
Alignment:
Q  404 ttgaaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaa 503  Q
    |||||||| | |||||||||||| |||||||||| ||||||| |||||||||||  ||||||||||||||||| |||| ||||||| || |  ||||||     
T  17993537 ttgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcaacaaccgctccatgttttccttgctattttgaaaaccctcttcat 17993636  T
Q  504 actcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttc 558  Q
     || || ||||||| ||||||| |||| | |||||||||| || |||||||||||    
T  17993637 gcttagcaagtgcttcaccataactatcattctgatgtcgcacctgagaaggttc 17993691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 532 - 572
Target Start/End: Complemental strand, 3279897 - 3279857
Alignment:
Q  532 agtctgatgtcgtacgtgagaaggttccacatcatagaaaa 572  Q
    |||||||||||| ||||| ||||||||||||||||||||||    
T  3279897 agtctgatgtcgcacgtgggaaggttccacatcatagaaaa 3279857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 48; Significance: 4e-18; HSPs: 6)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 536 - 627
Target Start/End: Complemental strand, 34927 - 34836
Alignment:
Q  536 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttc 627  Q
    |||||||| |||||||||||||||||||||||||||| ||| | ||| ||||| |   ||||||||||| |||||||||| |||||||||||    
T  34927 tgatgtcgcacgtgagaaggttccacatcatagaaaattggcaaaactagacgcccgctttccttgaagcagtgaatgatgtggacaagttc 34836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 536 - 627
Target Start/End: Complemental strand, 27650 - 27559
Alignment:
Q  536 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttc 627  Q
    |||||||| || ||||||||||||||||||||||||| ||| | ||| || || |  |||||||||||| | |||||||| |||||||||||    
T  27650 tgatgtcgcacatgagaaggttccacatcatagaaaattggcaaaacaaggcgccgattttccttgaagcaatgaatgatgtggacaagttc 27559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 536 - 629
Target Start/End: Complemental strand, 116998 - 116905
Alignment:
Q  536 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttcat 629  Q
    |||||||| |||||||||||||||||||| |||||||||||   ||| || || |  ||||| |||||| ||||||| || |||||||||||||    
T  116998 tgatgtcgcacgtgagaaggttccacatcgtagaaaactggctaaactaggcgcccattttctttgaagcagtgaataatgtggacaagttcat 116905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 447 - 627
Target Start/End: Complemental strand, 43257 - 43077
Alignment:
Q  447 tcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaagtgctgcaccatacctattagtctgatgtcgtac 546  Q
    |||||||||||||||||| ||||||||| | | || ||||||||||| | ||   |  |||||  ||||||  |||||| ||   | |||||||||  ||    
T  43257 tcttccatttctgcaacctctccatgttatccgtgctattttggaacttctcaatatgctcagccagtgctttaccataactgccaatctgatgtctcac 43158  T
Q  547 gtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttc 627  Q
    || ||||||||||||||||||||||| ||| | ||| || || |  |||| |||| || |||||||||| |||||||||||    
T  43157 gttagaaggttccacatcatagaaaattggcaaaactaggcgtccatttttcttgcagcagtgaatgatgtggacaagttc 43077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 447 - 493
Target Start/End: Complemental strand, 35016 - 34970
Alignment:
Q  447 tcttccatttctgcaaccgctccatgtttttcttgttattttggaac 493  Q
    |||||||||||||||||| ||||||||| | ||||||||||||||||    
T  35016 tcttccatttctgcaacctctccatgttatccttgttattttggaac 34970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 447 - 499
Target Start/End: Complemental strand, 27739 - 27687
Alignment:
Q  447 tcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttct 499  Q
    ||||||||||||||||||  |||||| | | |||||||||||||||||| |||    
T  27739 tcttccatttctgcaacctatccatgctatgcttgttattttggaacctctct 27687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 439 - 627
Target Start/End: Original strand, 58170 - 58358
Alignment:
Q  439 aagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaagtgctgcaccatacctattagtctga 538  Q
    |||||||||||||||||||||||||| ||| ||| | | |||| ||||||||||||| ||   |  ||| | |||||||  |||||| ||   |   |||    
T  58170 aagagctgtcttccatttctgcaacctctctatgctatccttgctattttggaacctctcaatatgctcggcaagtgctttaccataacttccatcttga 58269  T
Q  539 tgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttc 627  Q
    ||||| ||||||||||||||||| |||||||||| ||| | ||| || || |  | ||||| |||| |||||||||| |||||||||||    
T  58270 tgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattcctcgaagcagtgaatgatgtggacaagttc 58358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 496 - 629
Target Start/End: Original strand, 5090899 - 5091032
Alignment:
Q  496 ttcttcaaactcagaaagtgctgcaccatacctattagtctgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttt 595  Q
    |||||||  ||||| ||||||| ||||||| ||   |||||||| ||| || ||||||||||||||| |||||||||  || | ||| || | ||  |||    
T  5090899 ttcttcatgctcagcaagtgcttcaccataacttccagtctgatatcgcacatgagaaggttccacaccatagaaaataggcaaaaccaggcaaccattt 5090998  T
Q  596 tccttgaagtagtgaatgatatggacaagttcat 629  Q
    |||||| || ||||||| ||||||||||||||||    
T  5090999 tccttggagcagtgaataatatggacaagttcat 5091032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 407 - 492
Target Start/End: Original strand, 18699243 - 18699328
Alignment:
Q  407 aaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaa 492  Q
    ||||| ||||| || ||||| ||||||| |   ||||||  ||||||||  |||||||||||||||||||||||||||||||||||    
T  18699243 aaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgcaaccgctccatgtttttcttgttattttggaa 18699328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 448 - 492
Target Start/End: Original strand, 18655361 - 18655405
Alignment:
Q  448 cttccatttctgcaaccgctccatgtttttcttgttattttggaa 492  Q
    ||||||||  |||||||||||||||||||||||||||||||||||    
T  18655361 cttccattgatgcaaccgctccatgtttttcttgttattttggaa 18655405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 448 - 492
Target Start/End: Original strand, 18723969 - 18724013
Alignment:
Q  448 cttccatttctgcaaccgctccatgtttttcttgttattttggaa 492  Q
    ||||||||  |||||||||||||||||||||||||||||||||||    
T  18723969 cttccattgatgcaaccgctccatgtttttcttgttattttggaa 18724013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 448 - 492
Target Start/End: Original strand, 18731388 - 18731432
Alignment:
Q  448 cttccatttctgcaaccgctccatgtttttcttgttattttggaa 492  Q
    ||||||||  |||||||||||||||||||||||||||||||||||    
T  18731388 cttccattgatgcaaccgctccatgtttttcttgttattttggaa 18731432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 536 - 627
Target Start/End: Original strand, 18655449 - 18655540
Alignment:
Q  536 tgatgtcgtacgtgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttc 627  Q
    |||||||||| ||||| ||| |||||  |||||||||| |||| ||||||||||| ||||  |||| || ||||||||||  ||||||||||    
T  18655449 tgatgtcgtatgtgagtaggatccacgccatagaaaacaggaaaaacgagacgaccctttgtcttgtagcagtgaatgatgcggacaagttc 18655540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 407 - 492
Target Start/End: Original strand, 18679410 - 18679495
Alignment:
Q  407 aaatgatagccagataagttcgcagcttggtaaagagctgtcttccatttctgcaaccgctccatgtttttcttgttattttggaa 492  Q
    ||||| ||||| || ||||| ||||||| |   ||||||  ||||||||  |||||||||||||||||||| ||||||||||||||    
T  18679410 aaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgcaaccgctccatgtttttattgttattttggaa 18679495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 448 - 627
Target Start/End: Original strand, 29273667 - 29273846
Alignment:
Q  448 cttccatttctgcaaccgctccatgtttttcttgttattttggaacctttcttcaaactcagaaagtgctgcaccatacctattagtctgatgtcgtacg 547  Q
    ||||||||  |||||||| ||||||||||||||| |||||||||| || |||||  ||| ||  ||   | ||||||| ||   | | |||||||||| |    
T  29273667 cttccattgatgcaaccgatccatgtttttcttgctattttggaaactctcttcgtacttagtgagatgttcaccataactcccactttgatgtcgtatg 29273766  T
Q  548 tgagaaggttccacatcatagaaaactggaagaacgagacgactcttttccttgaagtagtgaatgatatggacaagttc 627  Q
    |||| ||| |||||  ||||||| || || | || |||||||| ||||  |||| || |||||||||| |||||||||||    
T  29273767 tgagtaggatccacgccatagaagacaggcaaaatgagacgaccctttgtcttgtagcagtgaatgatgtggacaagttc 29273846  T

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