View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14097_high_7 (Length: 526)
Name: NF14097_high_7
Description: NF14097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14097_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 476; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 16 - 515
Target Start/End: Original strand, 10611119 - 10611618
Alignment:
| Q |
16 |
ctatcaacaagacactggtaacttttacaactataaggctcccagataacgcttgtgtccggtggagtcatccaaaggctatccggtaaaggcgttggct |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10611119 |
ctatcaacaagacactggtaacttttacaactataaggctcccagataacgcttgtgtccggtggagtcatccaaagactatccggtaaaggcgttggct |
10611218 |
T |
|
| Q |
116 |
ctacataatttatcagagacttcgagtggcatctccgacgaggtaacggttcacacccttttagtataagtccttgtgaaagttcatcatctacaggaca |
215 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10611219 |
ctacataatttgtcagagacttcgagtggcatctccgacgaggtaacggttcacacccttttagtataagtccttgtgaaagtacatcatctacaggaca |
10611318 |
T |
|
| Q |
216 |
ttcccctccaatgtcatatgtcatatattgctttaactcctcatggagcctcaagcaggcttcaccaacaggcatgtaaatctcccctgacccgatcttc |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10611319 |
ttcccctccaatgtcatatgtcatatattgctttaactcctcatgaagcctcaagcaggcttcaccaacaggcatgtaaatctcccctgacccgatcttc |
10611418 |
T |
|
| Q |
316 |
ggtgagtactcgaaagggagcttgtgagggccaagtgcaataccgagctcatcagatattgtagcagcagctgtattggaatcaccgtttacaaggtttg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10611419 |
ggtgagtactcgaaagggagcttgtgagggccaagtgcaataccgagctcatcagatattgtagcagcagctgtattggaatcaccgtttacaaggtttg |
10611518 |
T |
|
| Q |
416 |
cagtcaaggtgttcttgtctgcacggttggattgtttttcttgttcgcgggtgagatcgataagcaaggcctggacacgtaaattagtggagtttagtct |
515 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10611519 |
cagtcaaggtgttcttgtctgcatggttggattgtttttcttgttcgcgggtgagatcgataagcaaggcctggacaagtaaattagtggagtttagtct |
10611618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 515
Target Start/End: Original strand, 10614549 - 10615048
Alignment:
| Q |
16 |
ctatcaacaagacactggtaacttttacaactataaggctcccagataacgcttgtgtccggtggagtcatccaaaggctatccggtaaaggcgttggct |
115 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| || |||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
10614549 |
ctatcaacaagacactggtaactcttacaactataaggctcccagataatgcttgtatctggtggagttgtccaaaggctatccggtaaaggtgttggct |
10614648 |
T |
|
| Q |
116 |
ctacataatttatcagagacttcgagtggcatctccgacgaggtaacggttcacacccttttagtataagtccttgtgaaagttcatcatctacaggaca |
215 |
Q |
| |
|
|||||||||| ||| ||||||| | |||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||| | |||||||||||||| |
|
|
| T |
10614649 |
ctacataattcatcggagactttgggtggcatctccgacgaggtagtggttcacaccctttgagtatgagtccttgcgaaagtacttcatctacaggaca |
10614748 |
T |
|
| Q |
216 |
ttcccctccaatgtcatatgtcatatattgctttaactcctcatggagcctcaagcaggcttcaccaacaggcatgtaaatctcccctgacccgatcttc |
315 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| |||||| |||||||||||||| |
|
|
| T |
10614749 |
ttcccctccaatgtcgtacgtcatatattgctttaactcctcattgagcctcaagcaggcttcaccaatagtcatgtgaatctcatctgacccgatcttc |
10614848 |
T |
|
| Q |
316 |
ggtgagtactcgaaagggagcttgtgagggccaagtgcaataccgagctcatcagatattgtagcagcagctgtattggaatcaccgtttacaaggtttg |
415 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||| |||||||||||||| | | ||||||| ||| | || ||| | ||| |||| ||| |
|
|
| T |
10614849 |
ggtgagtacccataagggagcttgtgagggccaagtgcaatactgagctcatcagatagcgaaccagcagcagtagttgagtcatcctttccaagcttta |
10614948 |
T |
|
| Q |
416 |
cagtcaaggtgttcttgtctgcacggttggattgtttttcttgttcgcgggtgagatcgataagcaaggcctggacacgtaaattagtggagtttagtct |
515 |
Q |
| |
|
|| | || | ||||| || |||||||||| || ||||||||||||||||| |||||||||||||||||||||||| |||| || |||||||| ||||| |
|
|
| T |
10614949 |
caattaaagggttctcatcaacacggttggagtgcttttcttgttcgcgggtaagatcgataagcaaggcctggacaagtaagttggtggagttgagtct |
10615048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University