View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14097_high_8 (Length: 500)
Name: NF14097_high_8
Description: NF14097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14097_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 35687291 - 35687000
Alignment:
| Q |
1 |
gattgcatgtctatggtaaaggaaccccagcatcatcattatgtgttttgtaaggagtgcccaattgagaggaccaagaatgagaccaaacctgaatcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35687291 |
gattgcatgtctatggtaaaggaaccccagcatcatcattatgtgttttgtaaggagtgcccaattgagaggaccaagaatgagaccaaacctgaatcat |
35687192 |
T |
|
| Q |
101 |
gcaagggacatctggttaggaagtttataaaggagtgctggaggaaatgtggatgtgacatgcagtgtggaaatcgggtagtgcaacgaggtttaagccg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35687191 |
gcaagggacatctggttaggaagtttataaaggagtgctggaggaaatgtggatgtgacatgcagtgtggaaatcgggtagtgcaacgaggtttaagccg |
35687092 |
T |
|
| Q |
201 |
taaattgcaggtacactatgagatttgcaatatgtttagggaagggtttatgtctttgattaactatttctttaaaactgttctctgcatac |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35687091 |
taaattgcaggtacactatgagatttgcaatatgtttagggaagggtttatgtctttgattaactatttctttaaaactgttctctgaatac |
35687000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 290 - 484
Target Start/End: Complemental strand, 35686967 - 35686773
Alignment:
| Q |
290 |
taccttagttagttttatgttatgttagatgagttatggaaaatacaaatgcaatatgtttaaggaagcatttatgtctttgatcctctatttatattcc |
389 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35686967 |
taccttagttagttttgtgttatgttagatgagttatggaaaatacaaatgcaatacgtttaaggaagcatttatgtctttgatcctctatttatattcc |
35686868 |
T |
|
| Q |
390 |
atacctttatagtataatgaagacatcctaatcaagttagaaattcagactaacagattaaaaaagttatgtttgtggaatgatcttgttggatc |
484 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35686867 |
atacctttatagtataatgaagatatcctaatcaagttagaaattcagactaacagattaaaaaagttatgtttgtgaaatgatcttgttggatc |
35686773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 25 - 219
Target Start/End: Complemental strand, 28537506 - 28537308
Alignment:
| Q |
25 |
ccccagcatcatcattatgtgttttgtaaggagtgcccaattgagaggaccaagaatgagaccaaacctgaa----tcatgcaagggacatctggttagg |
120 |
Q |
| |
|
|||||||||||||||||||| | |||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
28537506 |
ccccagcatcatcattatgtatattgtaaagagtgcccaattgagaggactaagaatgagaccaaacctgaaccatgcatgcaaggggcatctggttagg |
28537407 |
T |
|
| Q |
121 |
aagtttataaaggagtgctggaggaaatgtggatgtgacatgcagtgtggaaatcgggtagtgcaacgaggtttaagccgtaaattgcaggtacactat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28537406 |
aagtttataaaggagtgctggaggaaatgtggatgtgacatgcagtgtggaaatcgggtagtgcaacgaggtttaagccgtaaattgcaggtaaactat |
28537308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 290 - 480
Target Start/End: Complemental strand, 28537066 - 28536872
Alignment:
| Q |
290 |
taccttagttagttttatgtt---atgttagatga-gttatggaaaatacaaatgcaatatgtttaaggaagcatttatgtctttgatcctctatttata |
385 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
28537066 |
taccttagttagttttatgttgttatgttagatgaagttatggaaaatacaaatgcaatatgttcaaggaagcatttatgtctttgatcctctatttaca |
28536967 |
T |
|
| Q |
386 |
ttccatacctttatagtataatgaagacatcctaatcaagttagaaattcagactaacagattaaaaaagttatgtttgtggaatgatcttgttg |
480 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
28536966 |
ttccatacctttatagtataatgaagatgtcctaatcaagttagaaattcagaataacagattaaaatagttaagtttgtggaatgatcttgttg |
28536872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 218 - 292
Target Start/End: Complemental strand, 28537173 - 28537099
Alignment:
| Q |
218 |
atgagatttgcaatatgtttagggaagggtttatgtctttgattaactatttctttaaaactgttctctgcatac |
292 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
28537173 |
atgagatttgcaatatgtttagggaaggatttatgtctttgatcaactatttctttaaaactgttctctgaatac |
28537099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 44972317 - 44972524
Alignment:
| Q |
1 |
gattgcatgtctatggtaaaggaaccccagcatcatcattatgtgttttgtaaggagtgcccaattgagaggaccaagaatgagaccaaacctgaatcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |||||| |||||| |||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
44972317 |
gattgcatgtctatggtaaaggaaccccatcatcatcatgatgtgtattgtaaagagtgcccaattgagaggactaagaatgagaccaaacctgaaccat |
44972416 |
T |
|
| Q |
101 |
gcaagggacatctggttaggaagtttataaaggagtgctggaggaaatgtggatgtgacatgcagtgtggaaatcgggtagtgcaacgaggtttaagccg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44972417 |
gcaagggacatctggttaggaagtttataaaggagtgctggaggaaatgtggatgtgtgatgcagtgtggaaatcgggtagtgcaacgaggtttaagccg |
44972516 |
T |
|
| Q |
201 |
taaattgc |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
44972517 |
taaattgc |
44972524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 5e-60; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 76 - 205
Target Start/End: Complemental strand, 7723673 - 7723544
Alignment:
| Q |
76 |
aagaatgagaccaaacctgaatcatgcaagggacatctggttaggaagtttataaaggagtgctggaggaaatgtggatgtgacatgcagtgtggaaatc |
175 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7723673 |
aagattgagaccaaacctgaaccatgcaagggacatctggttaggaagtttataaaggagtgctggaggaaatgtggatgtgacatgcagtgtggaaatc |
7723574 |
T |
|
| Q |
176 |
gggtagtgcaacgaggtttaagccgtaaat |
205 |
Q |
| |
|
||||||||||| |||||||||||||||||| |
|
|
| T |
7723573 |
gggtagtgcaatgaggtttaagccgtaaat |
7723544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 307 - 480
Target Start/End: Complemental strand, 7723145 - 7722964
Alignment:
| Q |
307 |
tgttatgttagatga-gttatggaaaatacaaatgcaatatgtttaaggaagcatttatgtctttgatcctctatttatattccata-------ccttta |
398 |
Q |
| |
|
||||||||||||||| || |||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| | |||| |
|
|
| T |
7723145 |
tgttatgttagatgaagtgatggaaaatatgaatgcaatatgtttaaggaaacatttatgtctttgatcctatatttatattccataatccatactttta |
7723046 |
T |
|
| Q |
399 |
tagtataatgaagacatcctaatcaagttagaaattcagactaacagattaaaaaagttatgtttgtggaatgatcttgttg |
480 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
7723045 |
tagtataatgaagatatcctaatcaagttagaaattcagactaacagactaaaaaagttaagtttgtggaatgatcttgttg |
7722964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 7723992 - 7723919
Alignment:
| Q |
1 |
gattgcatgtctatggtaaaggaaccccagcatcatcattatgtgttttgtaaggagtgcccaattgagaggac |
74 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
7723992 |
gattgcatgtctatggtaaagaaaccccagcatcatcattatgtgtattgtaaagagtgcccaattgagaggac |
7723919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 218 - 280
Target Start/End: Complemental strand, 7723436 - 7723374
Alignment:
| Q |
218 |
atgagatttgcaatatgtttagggaagggtttatgtctttgattaactatttctttaaaactg |
280 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||| |||| |||||||||||||| |
|
|
| T |
7723436 |
atgagatttgcaatatgtttagggagggatttatgtctttgataaactgtttctttaaaactg |
7723374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University