View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14097_low_10 (Length: 488)
Name: NF14097_low_10
Description: NF14097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14097_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 6 - 469
Target Start/End: Complemental strand, 3056069 - 3055606
Alignment:
| Q |
6 |
gtccaagaatatccttgttcttctttcactactccttgttctctcttaccttccaaaaacaaactcacttttcttcaacataacaaactttgatgatcct |
105 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3056069 |
gtccaaaaatatccttgttcttttttcactactccttgttctctcttaccttccaaaaacaaactcacttttgttcaacataacaaactttgatgatcca |
3055970 |
T |
|
| Q |
106 |
acagttgcatcaaacatgtcataccaaggtgatggaaaatccaccaatggttccattgatctcaacaaagtaagttaccttttccgtgtaggaagagcat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3055969 |
acagttgcatcaaacatgtcataccaaggtgatggaaaatccaccaatggttccattgatctcaacaaagtaagttaccttttccgtgtaggaagagcat |
3055870 |
T |
|
| Q |
206 |
tctattcacaacctttacatttatgggacnnnnnnnccaacactctcacaagtttcaccacacgtttttcttttacaattgataaactaaatgacactac |
305 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3055869 |
tctattcacaacctttacatttatgggacaaaaaaaccaacactctcacaagtttcaccacacgtttttcttttacaattgataaactaaatgacactac |
3055770 |
T |
|
| Q |
306 |
atacggtgacggttttgtgttttacttggcacctttaggttatcaaataccacctaattcagctggtggtgtttatggtctttttaatgctactactaat |
405 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3055769 |
atacggtgatggttttgtgttttacttggcacctttaggttatcaaataccacctaattcagctggtggtgtttatggtctttttaatgctactactaat |
3055670 |
T |
|
| Q |
406 |
agtaactttgttatgaactatgttgttggtgttgagtttgatacttttgttggtcccactgatc |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3055669 |
agtaactttgttatgaactatgttgttggtgttgagtttgatacttttgttggtcccactgatc |
3055606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University