View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14097_low_11 (Length: 477)
Name: NF14097_low_11
Description: NF14097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14097_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 19 - 463
Target Start/End: Original strand, 24614502 - 24614947
Alignment:
| Q |
19 |
taatctgagagtgtctgtgcttcatatgaaat-agaaattagagnnnnnnngtatatactcacagcagttccaaaagataacttttctttgcgaccattg |
117 |
Q |
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|||| ||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24614502 |
taatgtgagagtgtctgtgcttgatatgaaattagaaattagagaagaaaaatatatactcacagcagttccaaaagataacttttctttgcgaccattg |
24614601 |
T |
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| Q |
118 |
agaagaatagtaccagaaagaaaagcattagaagctaaacgactagaaagtgcatcaagaagagttgattttccagaaccagaaggtcccataagagcag |
217 |
Q |
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| T |
24614602 |
agaagaatagtaccagaaagaaaagcattagaagctaaacgactagaaagtgcatcaagaagagttgattttccagaaccagaaggtcccataagagcag |
24614701 |
T |
|
| Q |
218 |
tgaaatagcctggttcagcataaccagttaaattctcaagaacattttgtatttcaccattgcttagggttaccataacagttaaatctttccatgttaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24614702 |
tgaaatagcctggttcagcataaccagttaaattctcaagaacattttgtatttcaccattgcttagggttaccataacagttaaatctttccatgttaa |
24614801 |
T |
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| Q |
318 |
tcttgctgaaacatcaccaatgatatctggttttgctttttctctccatagggtttcactcaatggactcaaagatggtaaatttgatgttacttcattt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24614802 |
tcttgctgaaacatcaccaatgatatctggttttgctttttctctccatagggtttcactcaatggactcaaagatggtaaatttgatgttacttcattt |
24614901 |
T |
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| Q |
418 |
cctaatgaacttggtttgtaactttgttctatctccattgcttgat |
463 |
Q |
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| T |
24614902 |
cctaatgaacttggtttgtaactttgttctatctccattgcttgat |
24614947 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 29476658 - 29476616
Alignment:
| Q |
169 |
gcatcaagaagagttgattttccagaaccagaaggtcccataa |
211 |
Q |
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| T |
29476658 |
gcatcaagaagagtagattttccagaaccagatggacccataa |
29476616 |
T |
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