View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14097_low_12 (Length: 471)
Name: NF14097_low_12
Description: NF14097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14097_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 13 - 453
Target Start/End: Original strand, 395301 - 395738
Alignment:
| Q |
13 |
ataattctgcatgggaaagatcaataaatgtggtcaccgtgtacatgcttccaattggaaaccatttagaccctttttctcccctgggaaagttttgtaa |
112 |
Q |
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| T |
395301 |
ataattctgcatgggaaagatcaataaatgtggccaccgtctacatgcttccaattggaaaccatttagaccctttttctcccctgggaaagttttgtaa |
395400 |
T |
|
| Q |
113 |
atggcctaattttgttgttgtatctaccacgtccaacacaacatagtcgatcattggcttctccaattaannnnnnnnnnnnnnngagttcattagataa |
212 |
Q |
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| T |
395401 |
atggcctaattttgttgttgtatctaccacgtccaacacaacatagtagatcattggcttctccaattaatatatttttttt---gagttcattagataa |
395497 |
T |
|
| Q |
213 |
gtgtagatgattccctcaacnnnnnnnnnn--gataagtgtagatgattgaaatattgatcaatgacatgaatgattctgaaagtatagtataaaacgtt |
310 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
395498 |
gtgtagatgattccctcaaaaaaaaaaaaaaagataagtgtagatgattgaaatattgatcaatgacatgaatgattctgaaagta--gtataaaacgtt |
395595 |
T |
|
| Q |
311 |
ggtttgataaatcaagtagtgcatctgccggtaggtctactttctttcatgttactttcatcccactttaactcatatgtcaacaatgaaatatcatatt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
395596 |
ggtttgataaatcaagtagtgcatctgccggtaggtctactttctttcatgttactttcatcccactttaactcatatgtcaacaatgaaatatcatatt |
395695 |
T |
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| Q |
411 |
tcggcttgatcaataactttaggccttatttagacaaacatct |
453 |
Q |
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| T |
395696 |
tcggcttgatcaataactttaggccttatttagacaaacatct |
395738 |
T |
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