View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14097_low_13 (Length: 464)
Name: NF14097_low_13
Description: NF14097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14097_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 9419154 - 9418839
Alignment:
| Q |
1 |
ttcctttcatgcaggtttagacaatatataatctaatcctgaaacattacacaaaaacagtcacttaaaggatatatcttttcatttagtcttttatttt |
100 |
Q |
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|||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9419154 |
ttcccttcatgcatgtctagacaatatataatctaatcctgaaacattacacaaaaacagtcacttaaaggatatatcttttcatttagtcttttatttt |
9419055 |
T |
|
| Q |
101 |
gcagtactattttaatcaatataccatgtcaagtcttccctccatcttgttacacgagccctgcatgaatcaattcaaagtcaatgtgtgtactcatttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9419054 |
gcagtactattttaatcaatataccatgtcaagtcttccctccatcttgttacacgagccctgcatgaatcaatttaaagtcaatgtgtgtactcatttt |
9418955 |
T |
|
| Q |
201 |
attttatccaggttaaacaattaaaatagaacattgttaagtgtacaaacagagtttcacacttggtggatagctgaatataaatataacaatcacttgg |
300 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9418954 |
attttatcaaggttaaacaattaaaatagaacattgttaagtgtacaaatagagtttcacacttggtggatagctgaatataaatataacaatcacttgg |
9418855 |
T |
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| Q |
301 |
aataccatcacacttg |
316 |
Q |
| |
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|||||||||||||||| |
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| T |
9418854 |
aataccatcacacttg |
9418839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 378 - 449
Target Start/End: Complemental strand, 9418777 - 9418706
Alignment:
| Q |
378 |
gacatggccatgggtgttggggattctgagagggtttctagggaaacagatgatgttgatgacagtgaaaac |
449 |
Q |
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| T |
9418777 |
gacatggccatgggtgttggggattctgagagggtttttagggaaacaaatgatgttgatgacagtgaaaac |
9418706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 81 - 316
Target Start/End: Original strand, 12001033 - 12001267
Alignment:
| Q |
81 |
ttcatttagtcttttattttgcagtactattttaatcaatataccatgtcaagtcttccctccatcttgttacacgagccctgcatgaatcaattcaaag |
180 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12001033 |
ttcatttagtcttttattttgcagtactattttaatcaatataccatgtcaagtcttccctccatcttgttacacgagccctgcatgaatcaattcaaag |
12001132 |
T |
|
| Q |
181 |
tcaatgtgtgtactcattttattttatccaggttaaacaattaaaatagaacattgttaagtgtacaaacagagtttcacacttggtggatagctgaata |
280 |
Q |
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|||||||||||||||||||| ||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12001133 |
tcaatgtgtgtactcatttt-ttttatcaaggttgaataattaaaatagaacattgttaagtgtacaaacagagtttcacacttggtggatagctgaata |
12001231 |
T |
|
| Q |
281 |
taaatataacaatcacttggaataccatcacacttg |
316 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
12001232 |
taaatataacaatcacttggaataccatcacacttg |
12001267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 378 - 449
Target Start/End: Original strand, 12001328 - 12001399
Alignment:
| Q |
378 |
gacatggccatgggtgttggggattctgagagggtttctagggaaacagatgatgttgatgacagtgaaaac |
449 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||| |
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| T |
12001328 |
gacatggccatggatgttggggattctgagagggtttatatggaaacaaatgatgttgatgacagtgaaaac |
12001399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 178; Significance: 8e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 17814846 - 17814532
Alignment:
| Q |
1 |
ttcctttcatgcaggtttagacaatatataatctaatcctgaaacattacacaaaaacagtcacttaaaggatatatcttttcatttagtcttttatttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
17814846 |
ttcctttcatgcaggtttagacaatatataatctaatcctgaaatactacacaaaaacagtcacttaaagaatatatcttttaatttagtcttttatttt |
17814747 |
T |
|
| Q |
101 |
gcagtactattttaatcaatataccatg-tcaagtcttccctccatcttgttacacgagccctgcatgaatcaattcaaagtcaatgtgtgtactcattt |
199 |
Q |
| |
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||||||||||||| || ||||||||||| |||| |||||||| ||||||||| |||| |||||||| |||| ||||||||||||||| |||| |||| |
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| T |
17814746 |
gcagtactatttttattaatataccatgcccaagccttccctctatcttgttatgtgagcgctgcatgagtcaactcaaagtcaatgtgtatacttattt |
17814647 |
T |
|
| Q |
200 |
tattttatccaggttaaacaattaaaatagaacattgttaagtgtacaaacagagtttcacacttgg---tggatagctgaatataaatataacaatcac |
296 |
Q |
| |
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|||||||| |||||||| |||||||| | |||||||||||| |||||||||||||||||||||||| | |||| ||||||||||||||||| |||| |
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| T |
17814646 |
tattttattaaggttaaataattaaaa-aaaacattgttaagggtacaaacagagtttcacacttggggatatatagttgaatataaatataacagtcac |
17814548 |
T |
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| Q |
297 |
ttggaataccatcaca |
312 |
Q |
| |
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|||||||||| ||||| |
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| T |
17814547 |
ttggaataccttcaca |
17814532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 380 - 449
Target Start/End: Complemental strand, 17814465 - 17814396
Alignment:
| Q |
380 |
catggccatgggtgttggggattctgagagggtttctagggaaacagatgatgttgatgacagtgaaaac |
449 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||| ||||||||| |
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| T |
17814465 |
catggccatgggtgttggggattctgagagggtttctaaggaaacaaatggtgttgatgttagtgaaaac |
17814396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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