View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14097_low_14 (Length: 456)
Name: NF14097_low_14
Description: NF14097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14097_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 16 - 449
Target Start/End: Original strand, 2663320 - 2663753
Alignment:
| Q |
16 |
gaagcaacagaactaaaatgtgtcaaccagtgggattcaaattttccaacagttatctgccaagcaacattctcatctaatggtaaaatggtgtatgctt |
115 |
Q |
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| T |
2663320 |
gaagcaacagaactaaaatgtgtcaaccagtgggattcaaattttccaacagttatctgccaagcaacattctcatctaatggtcaaatggtgtatgctt |
2663419 |
T |
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| Q |
116 |
gttttcttgatgggaatttggcaatatttgatgcatcaaattttcaaatgcattataacattcagccttctgtttaccacctttcatcaattcccaggta |
215 |
Q |
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| T |
2663420 |
gttttcttgatgggaatttggcaatatttgatgcatcaaattttcaaatgcattataacattcagccttctgtttaccacctttcatcaattcccaggta |
2663519 |
T |
|
| Q |
216 |
c-nnnnnnnnnncttcttggctgtaatttcagggtttgcaataactaattgttagtttgnnnnnnnnnnnnnnnnnnnngcttgtctcctgagaggtcac |
314 |
Q |
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| T |
2663520 |
ctttttttttttcttcttggctgtaatttcagggtttgcaataactaattgttagtttg-atttttattatttttatttgcctgtctcctgagaggtcac |
2663618 |
T |
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| Q |
315 |
ttggttgcagactcgttcgtgcaccttgaggtactcggttttgagactcgggcaccaagagtttgaaaattttagttttagcttttagctttgaattata |
414 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2663619 |
ttggttgcagactcgttcttgcaccttgaggtactcggttttgagactcgggcaccaagagtttgaaaattttagttttagcttttagctttgaattata |
2663718 |
T |
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| Q |
415 |
atcacaaattcatgatttaattatacaagtagaat |
449 |
Q |
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| T |
2663719 |
atcacaaattcatgatttaattatacaagtagaat |
2663753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 355
Target Start/End: Complemental strand, 11080551 - 11080494
Alignment:
| Q |
297 |
tgtctcctgagaggtcacttggttgcagactcgttcgtgcaccttgaggtactcggttt |
355 |
Q |
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| T |
11080551 |
tgtctcccgagaggtcacttggttgcagacttgttcttgcgcctcgaggt-ctcggttt |
11080494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 355
Target Start/End: Original strand, 41477370 - 41477427
Alignment:
| Q |
297 |
tgtctcctgagaggtcacttggttgcagactcgttcgtgcaccttgaggtactcggttt |
355 |
Q |
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||||||| ||||||||||||||||||||||| |||| ||| ||| ||||| |||||||| |
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| T |
41477370 |
tgtctcccgagaggtcacttggttgcagacttgttcttgcgcctcgaggt-ctcggttt |
41477427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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