View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14097_low_16 (Length: 451)
Name: NF14097_low_16
Description: NF14097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14097_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 130 - 431
Target Start/End: Original strand, 25379139 - 25379440
Alignment:
| Q |
130 |
agcagtagtactgatgaacgctttttgagtagtcaaagttttgatatagtcttgaagaatagaagattgtggtttaccatcagtggtttgaggccttttg |
229 |
Q |
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| T |
25379139 |
agcagtagtactgatgaacgctttttgagtagtcaaagttttgatatagtcttgaagaatagaagattgtggtttaccatcagtggtttgaggccttttg |
25379238 |
T |
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| Q |
230 |
ttctttctccttgaattttgtctcctttttgttgcattccaatgattctttattgcattctcagttcttccaggaattctctttgctatctccgcccaac |
329 |
Q |
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| T |
25379239 |
ttctttctccttgaattttgtctcctttttgttgcattccaatgattctttattgcattctcagttcttccaggaattctctttgctatctctgcccaac |
25379338 |
T |
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| Q |
330 |
gatttccaatcatgccatgagtttcaacaagcatcctttcttcttcttcactccaactatctttctgcaacatataaagtaagttcggagtcataaagtg |
429 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
25379339 |
gatttccaatcatgccatgagtttcaataagcatcctttcttcttcttcactccaactatctttctgcaacatataaagtaagtttggagtcacaaagtg |
25379438 |
T |
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| Q |
430 |
at |
431 |
Q |
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|| |
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| T |
25379439 |
at |
25379440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 25378988 - 25379115
Alignment:
| Q |
12 |
catcatcataagattcagatataagtggtgatgatgaattttcatgagataggttagaaaaaacaaaggaagattggtttgaagaagggtcctcagagat |
111 |
Q |
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| T |
25378988 |
catcatcataagattcagatataagtggtgatgatgaattttcatgagataggttagaaaaaacaaaggaagattggtttgaagaagggtcctcagagat |
25379087 |
T |
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| Q |
112 |
cgctgacacggagctagtagcagtagta |
139 |
Q |
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| T |
25379088 |
cgctgacacggagctagtagcagtagta |
25379115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 227 - 396
Target Start/End: Original strand, 29671189 - 29671358
Alignment:
| Q |
227 |
ttgttctttctccttgaattttgtctcctttttgttgcattccaatgattctttattgcattctcagttcttccaggaattctctttgctatctccgccc |
326 |
Q |
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||||||||||| |||||||||||||| |||||||| |||||||||||||| ||||| ||||| ||||||||||| ||||| ||||||||||||| |||| |
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| T |
29671189 |
ttgttctttcttcttgaattttgtcttctttttgtggcattccaatgattttttatggcattttcagttcttcctggaatcttctttgctatctcagccc |
29671288 |
T |
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| Q |
327 |
aacgatttccaatcatgccatgagtttcaacaagcatcctttcttcttcttcactccaactatctttctg |
396 |
Q |
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|||| |||||||| || |||| || | || | || | ||||||||||||||||||||||||||||| |
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| T |
29671289 |
aacggtttccaattttggcatgtgtagctactaatattttctcttcttcttcactccaactatctttctg |
29671358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 257 - 327
Target Start/End: Complemental strand, 43866564 - 43866494
Alignment:
| Q |
257 |
tttgttgcattccaatgattctttattgcattctcagttcttccaggaattctctttgctatctccgccca |
327 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||| || | ||| || || ||||||||||| |
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| T |
43866564 |
tttgttgcattccaatggttttttattgcattctcagttcttcctggcaatcttttcgcaatctccgccca |
43866494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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