View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14097_low_18 (Length: 432)
Name: NF14097_low_18
Description: NF14097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14097_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 2 - 413
Target Start/End: Original strand, 54985540 - 54985957
Alignment:
| Q |
2 |
tagattatactaaaactagaatatgagacttttgcatcaagtaagattcttgcttttgaaatacggaaatattgatttagtactgaatg-agaatttaaa |
100 |
Q |
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|||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
54985540 |
tagactatattaaagctagaatatgagacttttgcatcaagtaagattcttgcttttgaaatacggaaatattgatttagtactgaatggagaatttaaa |
54985639 |
T |
|
| Q |
101 |
ctgcaggttgctgtggcacatacaattgggcatgttgcggctactgtgagtatgtccaaagttgcagtttcatttacacacataatcaaaagtggagaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54985640 |
ctgcaggttgctgtggcacatacaattgggcatgttgcggctactgtgagtatgtccaaagttgcagtttcatttacacacataatcaaaagtggagaac |
54985739 |
T |
|
| Q |
201 |
ctgctttcagtgttcttgtatcaagattcttgcttggtgaagcgttccctttacaagtttacctttcactactaccaattattggaggttgtgcacttgc |
300 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54985740 |
ctgctttcagtgttcttgtatcaaaattcttgcttggtgaagcgttccctttacaagtttacctttcactactaccaattattggaggttgtgcacttgc |
54985839 |
T |
|
| Q |
301 |
tgctgtcacagaacttaatttcaatatgattggtaagactacattcactt-----atttacatggttgattttcagatgctgattgtgttcttctatcat |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54985840 |
tgctgtcacagaacttaatttcaatatgattggtaagactacattcacttatttaatttacatggttgattttcagatgctgattgtgttcttctatcat |
54985939 |
T |
|
| Q |
396 |
agtagattgaggtgatat |
413 |
Q |
| |
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| T |
54985940 |
agtagattgagttgatat |
54985957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 105 - 335
Target Start/End: Original strand, 7883207 - 7883437
Alignment:
| Q |
105 |
aggttgctgtggcacatacaattgggcatgttgcggctactgtgagtatgtccaaagttgcagtttcatttacacacataatcaaaagtggagaacctgc |
204 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||| || ||||| ||||| ||||||||||| || |
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| T |
7883207 |
aggtagctgtggcacacacaattgggcatgttgctgcaactgtgagtatgtccaaagtagcagtttcattcactcacatcatcaagagtggagaaccagc |
7883306 |
T |
|
| Q |
205 |
tttcagtgttcttgtatcaagattcttgcttggtgaagcgttccctttacaagtttacctttcactactaccaattattggaggttgtgcacttgctgct |
304 |
Q |
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||||||||| || |||||||||||||||||||| ||||| |||||| | | ||||||||| ||| | | ||||| ||||| ||||||||||| |||||| |
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| T |
7883307 |
tttcagtgtgctagtatcaagattcttgcttggagaagcattccctatgccagtttacctctcattgttgccaataattggtggttgtgcactagctgct |
7883406 |
T |
|
| Q |
305 |
gtcacagaacttaatttcaatatgattggta |
335 |
Q |
| |
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|| |||||||| ||||||||||||||||||| |
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| T |
7883407 |
gtaacagaactcaatttcaatatgattggta |
7883437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 99 - 336
Target Start/End: Original strand, 18395987 - 18396224
Alignment:
| Q |
99 |
aactgcaggttgctgtggcacatacaattgggcatgttgcggctactgtgagtatgtccaaagttgcagtttcatttacacacataatcaaaagtggaga |
198 |
Q |
| |
|
|||| ||||||||||| ||||| |||||||| ||||| |||||||| || |||||||||||||| || || || |||||||| || ||||| ||||| || |
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| T |
18395987 |
aacttcaggttgctgttgcacacacaattggacatgtcgcggctacggttagtatgtccaaagtggctgtgtcgtttacacatatcatcaagagtggcga |
18396086 |
T |
|
| Q |
199 |
acctgctttcagtgttcttgtatcaagattcttgcttggtgaagcgttccctttacaagtttacctttcactactaccaattattggaggttgtgcactt |
298 |
Q |
| |
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|||||||| |||||||| || || ||||| | | |||||| | ||||| | | ||| || || || || | ||||| ||||| || ||||||||| |
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| T |
18396087 |
gcctgcttttagtgttctggtttcgagatttatcttgggtgaaaccttccccgtgccagtctatctgtctttaattccaatcattggtggatgtgcactt |
18396186 |
T |
|
| Q |
299 |
gctgctgtcacagaacttaatttcaatatgattggtaa |
336 |
Q |
| |
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|||||||| || ||||| |||||||||||||||||||| |
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| T |
18396187 |
gctgctgtgactgaactcaatttcaatatgattggtaa |
18396224 |
T |
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