View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14097_low_19 (Length: 423)
Name: NF14097_low_19
Description: NF14097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14097_low_19 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 8394333 - 8394747
Alignment:
| Q |
1 |
accctttccttacccatccctttggttctttgctgtatatatatgcatacatacatacatatgtattgataccaccttacacatattaacattcaaattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| |||| || ||||||||||||||||||||||| |||||||||||||| |
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| T |
8394333 |
accctttccttacccatccctttggttctttgctatatatatatacata----------taagtattgataccaccttacacatactaacattcaaattt |
8394422 |
T |
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| Q |
101 |
caaacattacaattaaccaaaccttttttatttccccaactatatactaatcctaaacacacacatcataacaataaataccttcaaataatat--atat |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
8394423 |
caaacattacaattaaccaaaccttttttatttccccaactatatactaatcctaaacacacacatcataacaataaacaccttcaaataatatatatat |
8394522 |
T |
|
| Q |
199 |
catgtcttcgatacaaacttcagttctactttcttgttctttatcgtcgtcttcaaatagagtaatcaatgcttcaatccatctcccaaaactcacaaat |
298 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8394523 |
catgtcttcaatacaaacttcagttctactttcttgttctttatcgtcgtcttcaaatagagtaatcaatgcttcaatccatctcccaaaactcacaaat |
8394622 |
T |
|
| Q |
299 |
atttcattgtcaaagatacaaactagaaaacaagttgatgatcaagaactaaaagtaatcaaacagtacaaaaatactccattattagaaaacaacaaca |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8394623 |
atttcattgtcaaagatacaaactagaaaacaagttgatgatcaagaactaaaagtaatcaaacagtacaaaaatactccattattagaaaacaacaaca |
8394722 |
T |
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| Q |
399 |
tcacacaaatattacaagatcaaca |
423 |
Q |
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| T |
8394723 |
tcacacaaatattacaagatcaaca |
8394747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 191 - 423
Target Start/End: Complemental strand, 8412934 - 8412702
Alignment:
| Q |
191 |
atatatatcatgtcttcgatacaaacttcagttctactttcttgttctttatcgtcgtcttcaaatagagtaatcaatgcttcaatccatctcccaaaac |
290 |
Q |
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|||||||||||| ||| ||||||||||||||| | |||||||||||||||| || |||||||| | |||||| ||||||||||||||||||||||||| |
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| T |
8412934 |
atatatatcatggctttattacaaacttcagttccaatttcttgttctttatcatcatcttcaaagaaagtaattaatgcttcaatccatctcccaaaac |
8412835 |
T |
|
| Q |
291 |
tcacaaatatttcattgtcaaagatacaaactagaaaacaagttgatgatcaagaactaaaagtaatcaaacagtacaaaaatactccattattagaaaa |
390 |
Q |
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| T |
8412834 |
tcacaaatatttcattgtcaaagatacaaactagaaaacaagttgatgatcaagaactaaaagtaatcaaacagtacaaaaatactccattattagaaaa |
8412735 |
T |
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| Q |
391 |
caacaacatcacacaaatattacaagatcaaca |
423 |
Q |
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| T |
8412734 |
caacaacatcacacaaatattacaagatcaaca |
8412702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 191 - 423
Target Start/End: Complemental strand, 8435032 - 8434800
Alignment:
| Q |
191 |
atatatatcatgtcttcgatacaaacttcagttctactttcttgttctttatcgtcgtcttcaaatagagtaatcaatgcttcaatccatctcccaaaac |
290 |
Q |
| |
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|||||||||||| ||| ||||||||||||||| | |||||||||||||||| || |||||||| | |||||| ||||||||||||||||||||||||| |
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| T |
8435032 |
atatatatcatggctttattacaaacttcagttccaatttcttgttctttatcatcatcttcaaagaaagtaattaatgcttcaatccatctcccaaaac |
8434933 |
T |
|
| Q |
291 |
tcacaaatatttcattgtcaaagatacaaactagaaaacaagttgatgatcaagaactaaaagtaatcaaacagtacaaaaatactccattattagaaaa |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8434932 |
tcacaaatatttcattgtcaaagatacaaactagaaaacaagttgatgatcaagaactaaaagtaatcaaacagtacaaaaatactccattattagaaaa |
8434833 |
T |
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| Q |
391 |
caacaacatcacacaaatattacaagatcaaca |
423 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
8434832 |
caacaacatcacacaaatattacaagatcaaca |
8434800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 210 - 352
Target Start/End: Complemental strand, 8431914 - 8431775
Alignment:
| Q |
210 |
tacaaacttcagttctactttcttgttctttatcgtcgtcttcaaatagagtaatcaatgcttcaatccatctcccaaaactcacaaatatttcattgtc |
309 |
Q |
| |
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||||||||||||||||| ||||||||||||||| || |||||| |||||||| |||||| |||| |||| ||||||||| |||||||||||||| | |
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| T |
8431914 |
tacaaacttcagttctaacttcttgttctttatcatc---ttcaaagagagtaattaatgctgcaattaatcttccaaaactcccaaatatttcattgcc |
8431818 |
T |
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| Q |
310 |
aaagatacaaactagaaaacaagttgatgatcaagaactaaaa |
352 |
Q |
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|| || ||||| ||||||||||||| |||||||||| ||||| |
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| T |
8431817 |
aactattcaaaccagaaaacaagttgttgatcaagaattaaaa |
8431775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 210 - 352
Target Start/End: Complemental strand, 8406833 - 8406694
Alignment:
| Q |
210 |
tacaaacttcagttctactttcttgttctttatcgtcgtcttcaaatagagtaatcaatgcttcaatccatctcccaaaactcacaaatatttcattgtc |
309 |
Q |
| |
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||||||||||||||||| ||||||||||||||| || |||||| |||||||| || ||| |||| |||| ||||||||| |||||||||||||| | |
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| T |
8406833 |
tacaaacttcagttctaacttcttgttctttatcatc---ttcaaagagagtaattaacgctgcaattaatcttccaaaactcccaaatatttcattgcc |
8406737 |
T |
|
| Q |
310 |
aaagatacaaactagaaaacaagttgatgatcaagaactaaaa |
352 |
Q |
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|| || ||||| ||||||||||||| |||||||||| ||||| |
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| T |
8406736 |
aactattcaaaccagaaaacaagttgttgatcaagaattaaaa |
8406694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 96
Target Start/End: Complemental strand, 8413009 - 8412977
Alignment:
| Q |
64 |
tattgataccaccttacacatattaacattcaa |
96 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
8413009 |
tattcataccaccttacacatattaacattcaa |
8412977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 96
Target Start/End: Complemental strand, 8435107 - 8435075
Alignment:
| Q |
64 |
tattgataccaccttacacatattaacattcaa |
96 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
8435107 |
tattcataccaccttacacatattaacattcaa |
8435075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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