View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14097_low_20 (Length: 401)

Name: NF14097_low_20
Description: NF14097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14097_low_20
NF14097_low_20
[»] chr4 (25 HSPs)
chr4 (18-382)||(48170622-48170986)
chr4 (35-380)||(33133864-33134221)
chr4 (233-380)||(33133720-33133865)
chr4 (90-185)||(45372183-45372278)
chr4 (84-197)||(47207750-47207863)
chr4 (86-180)||(48852534-48852628)
chr4 (307-382)||(48862922-48862997)
chr4 (90-185)||(48898585-48898680)
chr4 (319-377)||(48852343-48852401)
chr4 (91-185)||(48870408-48870502)
chr4 (91-177)||(48875720-48875806)
chr4 (91-185)||(48886094-48886188)
chr4 (306-382)||(48148006-48148082)
chr4 (86-137)||(48891326-48891377)
chr4 (91-138)||(49044311-49044358)
chr4 (86-185)||(50668918-50669017)
chr4 (90-143)||(48863137-48863190)
chr4 (93-185)||(50250907-50250999)
chr4 (328-379)||(7771085-7771136)
chr4 (344-379)||(45372419-45372454)
chr4 (317-379)||(7822650-7822712)
chr4 (349-379)||(7904713-7904743)
chr4 (91-141)||(49048699-49048749)
chr4 (91-143)||(37827109-37827161)
chr4 (324-372)||(45366560-45366608)
[»] chr6 (1 HSPs)
chr6 (90-185)||(21015672-21015767)
[»] chr8 (2 HSPs)
chr8 (310-379)||(15348543-15348612)
chr8 (330-379)||(4032264-4032313)
[»] chr1 (6 HSPs)
chr1 (307-379)||(24309858-24309930)
chr1 (99-137)||(24310097-24310135)
chr1 (327-373)||(24340101-24340147)
chr1 (307-369)||(24415527-24415589)
chr1 (99-136)||(24322389-24322426)
chr1 (313-377)||(24366838-24366902)
[»] chr5 (2 HSPs)
chr5 (86-185)||(42562441-42562540)
chr5 (343-375)||(29695837-29695869)
[»] scaffold0508 (1 HSPs)
scaffold0508 (307-373)||(11949-12015)
[»] chr3 (1 HSPs)
chr3 (91-143)||(47452022-47452074)
[»] chr7 (1 HSPs)
chr7 (100-144)||(30120435-30120479)


Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 382
Target Start/End: Original strand, 48170622 - 48170986
Alignment:
Q  18 ttaactgatcatacccaaaaccatatagataaaagcaatcgtatgcatttacaaaatctggatttaattcaataggagacaaaggtatttgtttatgaac 117  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  48170622 ttaactgatcatacccaaaaccatatagataaaagcaatcatatgcatctacaacatctgcatttaattcaataggagacaaaggtatttgtttatgaac 48170721  T
Q  118 tcgggtggatggattccataggtagaaacttgaattatgatgcaaaaatataaagcctctacaggaacttacaattttaacaagaccatcggataaggaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  48170722 tcgggtggatggattccataggtagaaacttgaattatgatgcaaaaatataaagcctctacaggaacttacaattttaacaagaccatcggataaggga 48170821  T
Q  218 gttataaaattagggttgggtctttcaataacagtattattccgaatagatacttcaaaatcgaaagatagtgtgtcactgagtgaacttgttatgaaca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48170822 gttataaaattagggttgggtctttcaataacagtattattccgaatagatacttcaaaatcgaaagatagtgtgtcactgagtgaacttgttatgaaca 48170921  T
Q  318 taattttacgagtgtgtgttgaagcggtaatttgaaaatgtgaatttgcaaagtgaggatcatga 382  Q
    |||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||    
T  48170922 taattttacgagtgtgtgtttaggcggtaatttgaaaatgcgaatttgcaaagtgaggatcatga 48170986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 35 - 380
Target Start/End: Original strand, 33133864 - 33134221
Alignment:
Q  35 aaaccatatagataaaagcaatcgtatgcatttacaaaa---------tctggatttaattcaataggagacaaaggtatttgtttatgaactcgggtgg 125  Q
    ||||||||||||||||||||||| ||||||| ||||| |         |||  |||||||||||| |||||||||||||||||||||||||||||||||     
T  33133864 aaaccatatagataaaagcaatcatatgcatctacaacagctacaacatctacatttaattcaattggagacaaaggtatttgtttatgaactcgggtga 33133963  T
Q  126 atggattccataggtagaaacttgaattatgat---gcaaaaatataaagcctctacaggaacttacaattttaacaagaccatcggataaggaagttat 222  Q
    ||||||||||||||| ||| |||||||||||||   |||||||||||||||||||| || |||||||||||| || |||||||||  |||||| | ||||    
T  33133964 atggattccataggtggaagcttgaattatgatcatgcaaaaatataaagcctctatagaaacttacaatttcaataagaccatcaaataagggatttat 33134063  T
Q  223 aaaattagggttgggtctttcaataacagtattattccgaatagatacttcaaaatcgaaagatagtgtgtcactgagtgaacttgttatgaacataatt 322  Q
    |||| |||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||| |||||||| |||||||| |||||||||||| ||||    
T  33134064 aaaactagggttgggtctttcaataacagtattattatgaatagatacctcaaaatcgaaagatcgtgtgtcattgagtgaatttgttatgaacacaatt 33134163  T
Q  323 ttacgagtgtgtgttgaagcggtaatttgaaaatgtgaatttgcaaagtgaggatcat 380  Q
    |||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  33134164 ttactagtgtgtgttgaggcggttatttgaaaatgtgaatttgcaaagtgaggatcat 33134221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 233 - 380
Target Start/End: Complemental strand, 33133865 - 33133720
Alignment:
Q  233 ttgggtctttcaataacagtattattccgaatagatacttcaaaatcgaaagatagtgtgtcactgagtgaacttgttatgaacataattttacgagtgt 332  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||  |||||||| |||||||| |||||||||||| |||||||| |||||    
T  33133865 ttgggtctttcaataacagtattattgtgaatagatacttcaaaatcgaaaga--gtgtgtcattgagtgaatttgttatgaacacaattttactagtgt 33133768  T
Q  333 gtgttgaagcggtaatttgaaaatgtgaatttgcaaagtgaggatcat 380  Q
    ||||||| ||||| ||||||||||| ||||||||||||||| ||||||    
T  33133767 gtgttgaggcggttatttgaaaatgcgaatttgcaaagtgaagatcat 33133720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 90 - 185
Target Start/End: Original strand, 45372183 - 45372278
Alignment:
Q  90 taggagacaaaggtatttgtttatgaactcgggtggatggattccataggtagaaacttgaattatgatgcaaaaatataaagcctctacaggaac 185  Q
    ||||||| |||||||||||||| ||||| |  ||||||||||||||||| |||||  ||||||||  ||||||||||||||| |||||||| ||||    
T  45372183 taggagaaaaaggtatttgtttctgaacaccagtggatggattccatagatagaaggttgaattaccatgcaaaaatataaaccctctacatgaac 45372278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 84 - 197
Target Start/End: Complemental strand, 47207863 - 47207750
Alignment:
Q  84 attcaataggagacaaaggtatttgtttatgaactcgggtggatggattccataggtagaaacttgaattatgatgcaaaaatataaagcctctacagga 183  Q
    ||||| ||||||| | |||||||||| | | |||||  ||||||||||||||||||||| | ||||||    ||||||||||||||||||||||||| ||    
T  47207863 attcattaggagagagaggtatttgtctctcaactccagtggatggattccataggtagtagcttgaaagtcgatgcaaaaatataaagcctctacatga 47207764  T
Q  184 acttacaattttaa 197  Q
    ||||| || |||||    
T  47207763 acttataactttaa 47207750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 86 - 180
Target Start/End: Complemental strand, 48852628 - 48852534
Alignment:
Q  86 tcaataggagacaaaggtatttgtttatgaactcgggtggatggattccataggtagaaact-tgaattatgatgcaaaaatataaagcctctaca 180  Q
    ||||| |||||||||||||||||||| ||||||| |||||||||||||||||| || || || ||||  | | |||||||||||||||||||||||    
T  48852628 tcaatgggagacaaaggtatttgtttgtgaactccggtggatggattccatagata-aatctctgaagaacggtgcaaaaatataaagcctctaca 48852534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 48862997 - 48862922
Alignment:
Q  307 tgttatgaacataattttacgagtgtgtgttgaagcggtaatttgaaaatgtgaatttgcaaagtgaggatcatga 382  Q
    |||| ||||||||||| || | ||||||||||  || |||| ||||||||||||||||||||||||||||||||||    
T  48862997 tgttctgaacataattctatgggtgtgtgttgcggcagtaagttgaaaatgtgaatttgcaaagtgaggatcatga 48862922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 185
Target Start/End: Complemental strand, 48898680 - 48898585
Alignment:
Q  90 taggagacaaaggtatttgtttatgaactcgggtggatggattccataggtagaaacttgaattatgatgcaaaaatataaagcctctacaggaac 185  Q
    |||||||||||||||||||||| ||| ||| |||||||||||||||||||| || |  |||   |  |||||||| ||||||||||||||| ||||    
T  48898680 taggagacaaaggtatttgtttgtgagctccggtggatggattccataggtggatatctgagcaagtatgcaaaagtataaagcctctacatgaac 48898585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 319 - 377
Target Start/End: Complemental strand, 48852401 - 48852343
Alignment:
Q  319 aattttacgagtgtgtgttgaagcggtaatttgaaaatgtgaatttgcaaagtgaggat 377  Q
    |||| |||||||||||||||| || ||||||| |||||| |||||||||||||||||||    
T  48852401 aattctacgagtgtgtgttgaggcagtaatttcaaaatgcgaatttgcaaagtgaggat 48852343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 91 - 185
Target Start/End: Complemental strand, 48870502 - 48870408
Alignment:
Q  91 aggagacaaaggtatttgtttatgaactcgggtggatggattccataggtagaaacttgaattatgatgcaaaaatataaagcctctacaggaac 185  Q
    |||| |||||||||||||||| |||| || |||||||||||||||||||||||   ||| |  |  |||||| ||||||||||||||||| ||||    
T  48870502 aggacacaaaggtatttgtttgtgaaatccggtggatggattccataggtagagggttggagcacaatgcaataatataaagcctctacatgaac 48870408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 91 - 177
Target Start/End: Complemental strand, 48875806 - 48875720
Alignment:
Q  91 aggagacaaaggtatttgtttatgaactcgggtggatggattccataggtagaaacttgaattatgatgcaaaaatataaagcctct 177  Q
    |||||||| |||||||||||| |||| || |||||||||||||||||||||||  ||||||  |  |||||| | ||||||||||||    
T  48875806 aggagacataggtatttgtttgtgaaatccggtggatggattccataggtagaggcttgaaaaacaatgcaacagtataaagcctct 48875720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 91 - 185
Target Start/End: Complemental strand, 48886188 - 48886094
Alignment:
Q  91 aggagacaaaggtatttgtttatgaactcgggtggatggattccataggtagaaacttgaattatgatgcaaaaatataaagcctctacaggaac 185  Q
    |||| |||||||||||||||| |||| || |||||||||||||||||||||||   ||| |  |  |||||| ||||||||||||||||| ||||    
T  48886188 aggacacaaaggtatttgtttgtgaaatccggtggatggattccataggtagagggttggagcacaatgcaataatataaagcctctacatgaac 48886094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 306 - 382
Target Start/End: Original strand, 48148006 - 48148082
Alignment:
Q  306 ttgttatgaacataattttacgagtgtgtgttgaagcggtaatttgaaaatgtgaatttgcaaagtgaggatcatga 382  Q
    |||| ||||| |||| | || |||||||| |||||||||| | || ||||||||||||||| |||||||||||||||    
T  48148006 ttgtgatgaaaataagtctatgagtgtgttttgaagcggtgagttcaaaatgtgaatttgcgaagtgaggatcatga 48148082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 48891377 - 48891326
Alignment:
Q  86 tcaataggagacaaaggtatttgtttatgaactcgggtggatggattccata 137  Q
    |||||||||||||||||||||||||| |||| ||  ||||||||||||||||    
T  48891377 tcaataggagacaaaggtatttgtttgtgaagtccagtggatggattccata 48891326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 91 - 138
Target Start/End: Original strand, 49044311 - 49044358
Alignment:
Q  91 aggagacaaaggtatttgtttatgaactcgggtggatggattccatag 138  Q
    ||||||||||||||||||||| |||||||  |||||||||||||||||    
T  49044311 aggagacaaaggtatttgtttgtgaactctagtggatggattccatag 49044358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 185
Target Start/End: Complemental strand, 50669017 - 50668918
Alignment:
Q  86 tcaataggagacaaaggtatttgtttatgaactcgggtggatggattccataggtagaaacttgaattatgatgcaaaaatataaagcctctacaggaac 185  Q
    |||| ||||||||| ||||| |||||||||| || ||||||||||||||||| | |||   | |||  |  |||||||||||||||||||||||| ||||    
T  50669017 tcaaaaggagacaatggtatctgtttatgaaatctggtggatggattccatatgcagatgttggaagaacaatgcaaaaatataaagcctctacacgaac 50668918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 90 - 143
Target Start/End: Complemental strand, 48863190 - 48863137
Alignment:
Q  90 taggagacaaaggtatttgtttatgaactcgggtggatggattccataggtaga 143  Q
    |||||| | ||||||||||||| ||| ||| |||||||||||||||||||||||    
T  48863190 taggaggcgaaggtatttgtttctgagctccggtggatggattccataggtaga 48863137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 185
Target Start/End: Original strand, 50250907 - 50250999
Alignment:
Q  93 gagacaaaggtatttgtttatgaactcgggtggatggattccataggtagaaacttgaattatgatgcaaaaatataaagcctctacaggaac 185  Q
    ||||||||||||||||| | ||||  | |||||||||||||||||||||||  ||||||  |   || ||||||||||| |||||||| ||||    
T  50250907 gagacaaaggtatttgtatgtgaagcccggtggatggattccataggtagaggcttgaaaaacagtggaaaaatataaatcctctacatgaac 50250999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 379
Target Start/End: Complemental strand, 7771136 - 7771085
Alignment:
Q  328 agtgtgtgttgaagcggtaatttgaaaatgtgaatttgcaaagtgaggatca 379  Q
    ||||||||||| || || || |||||||||||||||| ||||||||||||||    
T  7771136 agtgtgtgttgcagaggcaagttgaaaatgtgaattttcaaagtgaggatca 7771085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 379
Target Start/End: Original strand, 45372419 - 45372454
Alignment:
Q  344 gtaatttgaaaatgtgaatttgcaaagtgaggatca 379  Q
    |||||||||||||||||||||||||| |||||||||    
T  45372419 gtaatttgaaaatgtgaatttgcaaaatgaggatca 45372454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 379
Target Start/End: Complemental strand, 7822712 - 7822650
Alignment:
Q  317 ataattttacgagtgtgtgttgaagcggtaatttgaaaatgtgaatttgcaaagtgaggatca 379  Q
    |||||| ||||||| ||||||| || ||| | |||||| ||||||||||||||||| ||||||    
T  7822712 ataattctacgagtatgtgttgcagtggtgaattgaaattgtgaatttgcaaagtggggatca 7822650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 379
Target Start/End: Complemental strand, 7904743 - 7904713
Alignment:
Q  349 ttgaaaatgtgaatttgcaaagtgaggatca 379  Q
    |||||||||||||||||||||||||||||||    
T  7904743 ttgaaaatgtgaatttgcaaagtgaggatca 7904713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 141
Target Start/End: Original strand, 49048699 - 49048749
Alignment:
Q  91 aggagacaaaggtatttgtttatgaactcgggtggatggattccataggta 141  Q
    ||||||||||||||||||| | |||||||  |||||||||||||| |||||    
T  49048699 aggagacaaaggtatttgtctgtgaactctagtggatggattccaaaggta 49048749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 37827109 - 37827161
Alignment:
Q  91 aggagacaaaggtatttgtttatgaactcgggtggatggattccataggtaga 143  Q
    ||||||||| ||||||||||| |||| ||  |||||||||||||||| |||||    
T  37827109 aggagacaagggtatttgtttgtgaaatccagtggatggattccatatgtaga 37827161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 372
Target Start/End: Original strand, 45366560 - 45366608
Alignment:
Q  324 tacgagtgtgtgttgaagcggtaatttgaaaatgtgaatttgcaaagtg 372  Q
    ||||||||||| |||  |||| || ||||||||||||||||||||||||    
T  45366560 tacgagtgtgttttgcggcggaaagttgaaaatgtgaatttgcaaagtg 45366608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 90 - 185
Target Start/End: Complemental strand, 21015767 - 21015672
Alignment:
Q  90 taggagacaaaggtatttgtttatgaactcgggtggatggattccataggtagaaacttgaattatgatgcaaaaatataaagcctctacaggaac 185  Q
    |||||||||||||||||||||| |||||||  ||||||||||||||||||||||   |||||| ||| |||||||||||||| |||||||| ||||    
T  21015767 taggagacaaaggtatttgtttgtgaactctagtggatggattccataggtagatgtttgaatcatggtgcaaaaatataaaccctctacatgaac 21015672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 379
Target Start/End: Complemental strand, 15348612 - 15348543
Alignment:
Q  310 tatgaacataattttacgagtgtgtgttgaagcggtaatttgaaaatgtgaatttgcaaagtgaggatca 379  Q
    |||| ||| |||| |||||||||||||||  |||||||||||||||||||||||||| |||| |||||||    
T  15348612 tatgcacaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatca 15348543  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 330 - 379
Target Start/End: Original strand, 4032264 - 4032313
Alignment:
Q  330 tgtgtgttgaagcggtaatttgaaaatgtgaatttgcaaagtgaggatca 379  Q
    ||||||||  || ||||||||||||||| |||||||||||||||||||||    
T  4032264 tgtgtgttttagaggtaatttgaaaatgcgaatttgcaaagtgaggatca 4032313  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 379
Target Start/End: Complemental strand, 24309930 - 24309858
Alignment:
Q  307 tgttatgaacataattttacgagtgtgtgttgaagcggtaatttgaaaatgtgaatttgcaaagtgaggatca 379  Q
    ||||||||| | |||| |||| |||||||||||||  |||| |||||||||||||||||||||||||| ||||    
T  24309930 tgttatgaagagaattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatca 24309858  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 24310135 - 24310097
Alignment:
Q  99 aaggtatttgtttatgaactcgggtggatggattccata 137  Q
    ||||||||||| ||||||||| |||||||||||||||||    
T  24310135 aaggtatttgtctatgaactccggtggatggattccata 24310097  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 373
Target Start/End: Complemental strand, 24340147 - 24340101
Alignment:
Q  327 gagtgtgtgttgaagcggtaatttgaaaatgtgaatttgcaaagtga 373  Q
    |||||||||||| ||| |||| |||||| ||||||||||||||||||    
T  24340147 gagtgtgtgttgcagcagtaacttgaaagtgtgaatttgcaaagtga 24340101  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 369
Target Start/End: Complemental strand, 24415589 - 24415527
Alignment:
Q  307 tgttatgaacataattttacgagtgtgtgttgaagcggtaatttgaaaatgtgaatttgcaaa 369  Q
    ||||| ||||| ||||  |||||||||||||| ||| ||||| ||||| ||||||||||||||    
T  24415589 tgttacgaacagaattcgacgagtgtgtgttgcagcagtaatctgaaactgtgaatttgcaaa 24415527  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 136
Target Start/End: Complemental strand, 24322426 - 24322389
Alignment:
Q  99 aaggtatttgtttatgaactcgggtggatggattccat 136  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  24322426 aaggtatttgtctatgaactcggggggatggattccat 24322389  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 377
Target Start/End: Complemental strand, 24366902 - 24366838
Alignment:
Q  313 gaacataattttacgagtgtgtgttgaagcggtaatttgaaaatgtgaatttgcaaagtgaggat 377  Q
    ||||| ||||| | || ||||||||| ||| ||||| ||||| |||||||||||||||| |||||    
T  24366902 gaacagaatttgatgattgtgtgttgcagcagtaatctgaaactgtgaatttgcaaagtaaggat 24366838  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 185
Target Start/End: Original strand, 42562441 - 42562540
Alignment:
Q  86 tcaataggagacaaaggtatttgtttatgaactcgggtggatggattccataggtagaaacttgaattatgatgcaaaaatataaagcctctacaggaac 185  Q
    |||||||||||||||||||||||||| |||  || | |||||||||||||||||||||| | || |  |  |||||||| |||||| |||||||| ||||    
T  42562441 tcaataggagacaaaggtatttgtttgtgatgtccgatggatggattccataggtagaagcatgcaccacaatgcaaaagtataaaccctctacacgaac 42562540  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 375
Target Start/End: Complemental strand, 29695869 - 29695837
Alignment:
Q  343 ggtaatttgaaaatgtgaatttgcaaagtgagg 375  Q
    ||||| |||||||||||||||||||||||||||    
T  29695869 ggtaagttgaaaatgtgaatttgcaaagtgagg 29695837  T

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Target: scaffold0508 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 373
Target Start/End: Complemental strand, 12015 - 11949
Alignment:
Q  307 tgttatgaacataattttacgagtgtgtgttgaagcggtaatttgaaaatgtgaatttgcaaagtga 373  Q
    ||||| ||||| |||  ||||||||||||||||||  |||| |||||||||||||||||||||||||    
T  12015 tgttaagaacagaatcctacgagtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtga 11949  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 47452022 - 47452074
Alignment:
Q  91 aggagacaaaggtatttgtttatgaactcgggtggatggattccataggtaga 143  Q
    ||||| ||||||||||||||| |||||||  |||||||||||||||| |||||    
T  47452022 aggaggcaaaggtatttgtttgtgaactccagtggatggattccatatgtaga 47452074  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 30120435 - 30120479
Alignment:
Q  100 aggtatttgtttatgaactcgggtggatggattccataggtagaa 144  Q
    |||||||||||| || |||| |||||||||||||||||| |||||    
T  30120435 aggtatttgtttgtggactccggtggatggattccatagatagaa 30120479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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