View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14097_low_24 (Length: 328)

Name: NF14097_low_24
Description: NF14097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14097_low_24
NF14097_low_24
[»] chr8 (1 HSPs)
chr8 (19-125)||(9197115-9197221)
[»] chr3 (2 HSPs)
chr3 (19-125)||(20213000-20213106)
chr3 (19-109)||(40872735-40872825)
[»] chr2 (2 HSPs)
chr2 (19-109)||(20432294-20432384)
chr2 (118-195)||(6583340-6583416)
[»] chr6 (3 HSPs)
chr6 (118-328)||(25061381-25061591)
chr6 (19-109)||(32263709-32263798)
chr6 (118-195)||(18228594-18228670)
[»] chr1 (4 HSPs)
chr1 (19-109)||(45818056-45818145)
chr1 (27-130)||(47968645-47968748)
chr1 (25-110)||(47969279-47969364)
chr1 (118-195)||(32996988-32997064)
[»] chr4 (6 HSPs)
chr4 (118-328)||(2445438-2445648)
chr4 (102-226)||(2444392-2444516)
chr4 (102-226)||(50184448-50184572)
chr4 (19-110)||(50450271-50450361)
chr4 (31-110)||(50450867-50450946)
chr4 (118-222)||(1465932-1466035)
[»] chr7 (2 HSPs)
chr7 (118-328)||(37394779-37394989)
chr7 (28-110)||(9753984-9754066)
[»] scaffold0164 (1 HSPs)
scaffold0164 (19-121)||(11694-11796)
[»] scaffold0176 (1 HSPs)
scaffold0176 (118-195)||(27467-27543)
[»] chr5 (2 HSPs)
chr5 (118-199)||(43510900-43510981)
chr5 (276-328)||(43510797-43510849)


Alignment Details
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 9197221 - 9197115
Alignment:
Q  19 ttatccgctaaggagtcttcaccataacaactaaggtgaataaatgtcaaccgttgagatggaaaaaagaacggataggatttggtgtcaactgattcat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |    
T  9197221 ttatccgctaaggagtcttcaccataacaactaaggtgaataaatgtcaaccgttgagatggaaaaaagaacggataggatttggtgtcaacgaattcgt 9197122  T
Q  119 tgacacc 125  Q
    |||||||    
T  9197121 tgacacc 9197115  T

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Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 20213106 - 20213000
Alignment:
Q  19 ttatccgctaaggagtcttcaccataacaactaaggtgaataaatgtcaaccgttgagatggaaaaaagaacggataggatttggtgtcaactgattcat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |    
T  20213106 ttatccgctaaggagtcttcaccataacaactaaggtgaataaatgtcaaccgttgagatggaaaaaagaacggataggatttggtgtcaacgaattcgt 20213007  T
Q  119 tgacacc 125  Q
    |||||||    
T  20213006 tgacacc 20213000  T

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Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 40872735 - 40872825
Alignment:
Q  19 ttatccgctaaggagtcttcaccataacaactaaggtgaataaatgtcaaccgttgagatggaaaaaagaacggataggatttggtgtcaa 109  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  40872735 ttatccgctaaggagtcttcaccataacaaccaaggtgaataaatgtcaaccgttgagatggaaaaaagaacggatagaatttggtgtcaa 40872825  T

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Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 20432294 - 20432384
Alignment:
Q  19 ttatccgctaaggagtcttcaccataacaactaaggtgaataaatgtcaaccgttgagatggaaaaaagaacggataggatttggtgtcaa 109  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  20432294 ttatccgctaaggagtcttcaccataacaaccaaggtgaataaatgtcaaccgttgagatggaaaaaagaacggatagaatttggtgtcaa 20432384  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 195
Target Start/End: Original strand, 6583340 - 6583416
Alignment:
Q  118 ttgacaccaaatcctcaccatctaaatttttaatcaagcggctatcaattcatctacatggtaacttcagtggactcc 195  Q
    |||||||||||||||  || |||||||||||||||||||||||| | ||| |||||| || |||||| ||||||||||    
T  6583340 ttgacaccaaatcctatccgtctaaatttttaatcaagcggcta-cgatttatctacgtgataacttgagtggactcc 6583416  T

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Target: chr6 (Bit Score: 79; Significance: 7e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 118 - 328
Target Start/End: Complemental strand, 25061591 - 25061381
Alignment:
Q  118 ttgacaccaaatcctcaccatctaaatttttaatcaagcggctatcaattcatctacatggtaacttcagtggactcccccttcactcacgtgttgtagg 217  Q
    |||||||||||| || ||| ||||||||||||||| |  ||||| ||||||||||||||| |||||  |||||||||||||| |||||| ||||||||||    
T  25061591 ttgacaccaaattctgaccgtctaaatttttaatcgaagggctaacaattcatctacatgataactagagtggactccccctgcactcaggtgttgtagg 25061492  T
Q  218 tttttcttttctccttgctaatgattacgtttcagcttaccatcctcttcggccgtcgatgaaatttcacttcttctcaaacaaattctgatacgaattg 317  Q
    | |||||||  || ||| |  |||||||||||| | |||||  |||||||| |   ||||||||||||||||||  || |||||||||| ||| ||||||    
T  25061491 tctttctttcatcattgttggtgattacgtttctgtttacctccctcttcgacgaccgatgaaatttcacttctattccaacaaattcttataggaattg 25061392  T
Q  318 tggtcgtctct 328  Q
    || ||||||||    
T  25061391 tgatcgtctct 25061381  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 32263709 - 32263798
Alignment:
Q  19 ttatccgctaaggagtcttcaccataacaactaaggtgaataaatgtcaaccgttgagatggaaaaaagaacggataggatttggtgtcaa 109  Q
    ||||| ||||||||||||| |||  |||| |||| |||||||||||||| |||||||||||  |||||| |||| ||||||||||| ||||    
T  32263709 ttatcagctaaggagtctt-acctaaacatctaaagtgaataaatgtcagccgttgagatgataaaaaggacgggtaggatttggtatcaa 32263798  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 195
Target Start/End: Complemental strand, 18228670 - 18228594
Alignment:
Q  118 ttgacaccaaatcctcaccatctaaatttttaatcaagcggctatcaattcatctacatggtaacttcagtggactcc 195  Q
    |||||||||||||||  || |||||||||||||||||||||||| | ||| |||||| || |||||| ||||||||||    
T  18228670 ttgacaccaaatcctatccgtctaaatttttaatcaagcggcta-cgatttatctacgtgataacttgagtggactcc 18228594  T

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Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 45818145 - 45818056
Alignment:
Q  19 ttatccgctaaggagtcttcaccataacaactaaggtgaataaatgtcaaccgttgagatggaaaaaagaacggataggatttggtgtcaa 109  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  45818145 ttatccgctaaggagtcttcaccataacaaccaaggtgaataaatgtcaaccgttgagatggaaaaaa-aacggatagaatttggtgtcaa 45818056  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 130
Target Start/End: Complemental strand, 47968748 - 47968645
Alignment:
Q  27 taaggagtcttcaccataacaactaaggtgaataaatgtcaaccgttgagatggaaaaaagaacggataggatttggtgtcaactgattcattgacacca 126  Q
    ||||| |||||||||  |||| |||| ||||||||||| || |||||||||||  |||||| |||||||||||||||||| |||  |||| |||||||||    
T  47968748 taaggggtcttcacctaaacatctaaagtgaataaatgacagccgttgagatgataaaaaggacggataggatttggtgttaacgaattcgttgacacca 47968649  T
Q  127 aatc 130  Q
    ||||    
T  47968648 aatc 47968645  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 47969279 - 47969364
Alignment:
Q  25 gctaaggagtcttcaccataacaactaaggtgaataaatgtcaaccgttgagatggaaaaaagaacggataggatttggtgtcaac 110  Q
    ||||| |||||||||||  ||||| ||| ||||| |||||||| |||||||||||  |||||| ||||||||||||||| ||||||    
T  47969279 gctaaagagtcttcacctgaacaattaaagtgaacaaatgtcatccgttgagatgataaaaaggacggataggatttggcgtcaac 47969364  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 195
Target Start/End: Complemental strand, 32997064 - 32996988
Alignment:
Q  118 ttgacaccaaatcctcaccatctaaatttttaatcaagcggctatcaattcatctacatggtaacttcagtggactcc 195  Q
    |||||||||||||||  || |||| ||||||||||||||||||| | ||| |||||| || |||||| ||||||||||    
T  32997064 ttgacaccaaatcctatccgtctacatttttaatcaagcggcta-cgatttatctacgtgataacttgagtggactcc 32996988  T

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Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 118 - 328
Target Start/End: Original strand, 2445438 - 2445648
Alignment:
Q  118 ttgacaccaaatcctcaccatctaaatttttaatcaagcggctatcaattcatctacatggtaacttcagtggactcccccttcactcacgtgttgtagg 217  Q
    |||||||||||| || ||| ||||||||||||||| |  ||||| ||||||||||||||| |||||  |||||||||||||| |||||| ||||||||||    
T  2445438 ttgacaccaaattctgaccgtctaaatttttaatcgaagggctaacaattcatctacatgataactagagtggactccccctgcactcaggtgttgtagg 2445537  T
Q  218 tttttcttttctccttgctaatgattacgtttcagcttaccatcctcttcggccgtcgatgaaatttcacttcttctcaaacaaattctgatacgaattg 317  Q
    | |||||||  || ||| |  |||||| ||||| ||||||   ||||||||     ||||||||||||||||||  || |||||||||| ||| ||||||    
T  2445538 tctttctttcatcattgttggtgattatgtttccgcttacatccctcttcgatgaccgatgaaatttcacttctattccaacaaattcttataggaattg 2445637  T
Q  318 tggtcgtctct 328  Q
    || ||||||||    
T  2445638 tgatcgtctct 2445648  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 102 - 226
Target Start/End: Original strand, 2444392 - 2444516
Alignment:
Q  102 ggtgtcaactgattcattgacaccaaatcctcaccatctaaatttttaatcaagcggctatcaattcatctacatggtaacttcagtggactcccccttc 201  Q
    ||||||||| ||||| |||||||||||| || ||| ||||||||||||||| |  ||||| ||||||||||||||| |||||  |||||||||||||| |    
T  2444392 ggtgtcaacggattcgttgacaccaaattctgaccgtctaaatttttaatcgaagggctaacaattcatctacatgataactagagtggactccccctgc 2444491  T
Q  202 actcacgtgttgtaggtttttcttt 226  Q
    ||||| ||||||||||| |||||||    
T  2444492 actcaggtgttgtaggtctttcttt 2444516  T

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Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 102 - 226
Target Start/End: Original strand, 50184448 - 50184572
Alignment:
Q  102 ggtgtcaactgattcattgacaccaaatcctcaccatctaaatttttaatcaagcggctatcaattcatctacatggtaacttcagtggactcccccttc 201  Q
    ||||||||| ||||| |||||||||||| || ||| ||||||||||||||| |  ||||| ||||||||||||||| |||||  |||||||||||||| |    
T  50184448 ggtgtcaacggattcgttgacaccaaattctgaccgtctaaatttttaatcgaagggctaacaattcatctacatgataactagagtggactccccctgc 50184547  T
Q  202 actcacgtgttgtaggtttttcttt 226  Q
    ||||| ||||||||||| |||||||    
T  50184548 actcaggtgttgtaggtctttcttt 50184572  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 50450361 - 50450271
Alignment:
Q  19 ttatccgctaaggagtcttcaccataacaactaaggtgaataaatgtcaaccgttgagatggaaaaaagaacggataggatttggtgtcaac 110  Q
    ||||| ||||||| |||||||||  |||| |||| ||||||||||  || |||||||||||  |||||| ||||||||||||||||||||||    
T  50450361 ttatcagctaagg-gtcttcacctaaacatctaaagtgaataaataacagccgttgagatgataaaaaggacggataggatttggtgtcaac 50450271  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 50450867 - 50450946
Alignment:
Q  31 gagtcttcaccataacaactaaggtgaataaatgtcaaccgttgagatggaaaaaagaacggataggatttggtgtcaac 110  Q
    ||||||||| |  |||||||||  ||||||||||||| |||||||||||  |||||| ||||||||| ||||||||||||    
T  50450867 gagtcttcatctgaacaactaaaatgaataaatgtcatccgttgagatgataaaaaggacggataggttttggtgtcaac 50450946  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 222
Target Start/End: Complemental strand, 1466035 - 1465932
Alignment:
Q  118 ttgacaccaaatcctcaccatctaaatttttaatcaagcggctatcaattcatctacatggtaacttcagtggactcccccttcactcacgtgttgtagg 217  Q
    ||||||||||||| | ||| |||||| ||||||||||||||||| | ||| ||||||||| ||| ||  |||||||| || | |||| | ||||| ||||    
T  1466035 ttgacaccaaatcataaccgtctaaaattttaatcaagcggctagc-atttatctacatgataatttaggtggactctccttacacttaggtgttctagg 1465937  T
Q  218 ttttt 222  Q
    |||||    
T  1465936 ttttt 1465932  T

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Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 118 - 328
Target Start/End: Original strand, 37394779 - 37394989
Alignment:
Q  118 ttgacaccaaatcctcaccatctaaatttttaatcaagcggctatcaattcatctacatggtaacttcagtggactcccccttcactcacgtgttgtagg 217  Q
    |||||| ||||| || ||| ||||||||||||||| |  |||||  |||||||||||||| |||||  |||||||||||||| |||||| |||||||||     
T  37394779 ttgacatcaaattctgaccgtctaaatttttaatcgaatggctaataattcatctacatgataactagagtggactccccctgcactcaggtgttgtagc 37394878  T
Q  218 tttttcttttctccttgctaatgattacgtttcagcttaccatcctcttcggccgtcgatgaaatttcacttcttctcaaacaaattctgatacgaattg 317  Q
    | |||||||  || ||| |  |||||||||||| | |||||  ||||||||     |||| |||||||||||||  || |||||||||| ||| ||||||    
T  37394879 tctttctttcatcattgttggtgattacgtttccgtttacctccctcttcgatgaccgataaaatttcacttctattccaacaaattcttataggaattg 37394978  T
Q  318 tggtcgtctct 328  Q
    || ||||||||    
T  37394979 tgatcgtctct 37394989  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 9753984 - 9754066
Alignment:
Q  28 aaggagtcttcaccataacaactaaggtgaataaatgtcaaccgttgagatggaaaaaagaacggataggatttggtgtcaac 110  Q
    ||||||||||||||  ||||| ||| |||||||||||||| ||||| ||||| ||||||| ||||||| ||||||||||||||    
T  9753984 aaggagtcttcacctgaacaattaaagtgaataaatgtcagccgttaagatgaaaaaaaggacggatatgatttggtgtcaac 9754066  T

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Target: scaffold0164 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 11796 - 11694
Alignment:
Q  19 ttatccgctaaggagtcttcaccataacaactaaggtgaataaatgtcaaccgttgagatggaaaaaagaacggataggatttggtgtcaactgattcat 118  Q
    ||||||||||| ||||||| |||  ||||| ||| |||||||||| ||| |||||||||||  |||||| ||||||||||||||||||||||| |||| |    
T  11796 ttatccgctaaagagtctttacctgaacaattaaagtgaataaatttcatccgttgagatgataaaaaggacggataggatttggtgtcaactaattcgt 11697  T
Q  119 tga 121  Q
    |||    
T  11696 tga 11694  T

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Target: scaffold0176 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 195
Target Start/End: Complemental strand, 27543 - 27467
Alignment:
Q  118 ttgacaccaaatcctcaccatctaaatttttaatcaagcggctatcaattcatctacatggtaacttcagtggactcc 195  Q
    |||||||||||||||  || |||||||||||||||||||||||| | ||| |||||| || |||||| ||||||||||    
T  27543 ttgacaccaaatcctatccgtctaaatttttaatcaagcggcta-cgatttatctacgtgataacttgagtggactcc 27467  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 199
Target Start/End: Complemental strand, 43510981 - 43510900
Alignment:
Q  118 ttgacaccaaatcctcaccatctaaatttttaatcaagcggctatcaattcatctacatggtaacttcagtggactccccct 199  Q
    ||||||| |||| || ||| ||||||||||||||| |  ||||| ||||||||||||||| || ||  ||||||||||||||    
T  43510981 ttgacactaaattctgaccgtctaaatttttaatcgaagggctaacaattcatctacatgatagctagagtggactccccct 43510900  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 328
Target Start/End: Complemental strand, 43510849 - 43510797
Alignment:
Q  276 atgaaatttcacttcttctcaaacaaattctgatacgaattgtggtcgtctct 328  Q
    ||||||||||||||||  || |||||||||| ||| |||||||| ||||||||    
T  43510849 atgaaatttcacttctattccaacaaattcttataggaattgtgatcgtctct 43510797  T

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