View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14097_low_25 (Length: 319)
Name: NF14097_low_25
Description: NF14097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14097_low_25 |
 | |
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| [»] chr6 (7 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 12 - 319
Target Start/End: Complemental strand, 3576403 - 3576096
Alignment:
| Q |
12 |
aggcccaagcgttgttgttgacggggtcagcgatatggtcggcaaggttctctagaggtccctttccagttacaatggcctgaacgaagaatccaaacat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
3576403 |
aggcccaagcgttgttgttgacggggtcagtgatatggtcggcaaggttctctagaggtccctttccggttacaatggcctgaacgaagaatccaaacat |
3576304 |
T |
|
| Q |
112 |
agagaacatagctagcctaccattcttaagttctttcacctttatctctgcaaaagcctctgggtcgtcagcgaggcccaatgggtcaaagcttccacct |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3576303 |
agagaacatagctagcctaccattcttaagttctttcacctttaactctgcaaaagcctctgggtcgtcagcgaggcccaatgggtcaaagcttccacct |
3576204 |
T |
|
| Q |
212 |
gggtagagtgggtcgactacctcaccaagaggtccaccggcaatacggtaaccctcaacagctcccattaagataacttggacagcccatatagcaagga |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3576203 |
gggtagagtgggtcgactacctcaccaagaggtccaccggcaatacggtaaccctcaacagctcccattaagataacttggacagcccatatagcaagga |
3576104 |
T |
|
| Q |
312 |
tgctttgt |
319 |
Q |
| |
|
| |||||| |
|
|
| T |
3576103 |
tactttgt |
3576096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 12 - 319
Target Start/End: Complemental strand, 3578259 - 3577952
Alignment:
| Q |
12 |
aggcccaagcgttgttgttgacggggtcagcgatatggtcggcaaggttctctagaggtccctttccagttacaatggcctgaacgaagaatccaaacat |
111 |
Q |
| |
|
|||||||||||||| ||||||| || |||||||| ||||| |||||||||||||| ||||||||| | |||||||||||||||||||| ||||||||||| |
|
|
| T |
3578259 |
aggcccaagcgttgctgttgactggatcagcgatgtggtcagcaaggttctctagtggtcccttttcggttacaatggcctgaacgaaaaatccaaacat |
3578160 |
T |
|
| Q |
112 |
agagaacatagctagcctaccattcttaagttctttcacctttatctctgcaaaagcctctgggtcgtcagcgaggcccaatgggtcaaagcttccacct |
211 |
Q |
| |
|
||||||||||||| ||| |||||||| |||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3578159 |
cgagaacatagctaacctgccattcttgagttctttaacctttaactctgcaaaagcctctgggtcgtctgcgaggcccaatgggtcaaagcttccaccg |
3578060 |
T |
|
| Q |
212 |
gggtagagtgggtcgactacctcaccaagaggtccaccggcaatacggtaaccctcaacagctcccattaagataacttggacagcccatatagcaagga |
311 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||| |||| |||||||||| |
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|
| T |
3578059 |
gggtagagtggatcgactacctcaccaagaggtccatcggcaatacggtaaccctcaacagctcccattaagatagctaggacaacccaaatagcaagga |
3577960 |
T |
|
| Q |
312 |
tgctttgt |
319 |
Q |
| |
|
|||||||| |
|
|
| T |
3577959 |
tgctttgt |
3577952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 12 - 319
Target Start/End: Original strand, 3584815 - 3585122
Alignment:
| Q |
12 |
aggcccaagcgttgttgttgacggggtcagcgatatggtcggcaaggttctctagaggtccctttccagttacaatggcctgaacgaagaatccaaacat |
111 |
Q |
| |
|
||||||||||||||||||| || ||||||||||| ||||| |||||||| | || |||||||||||| || || ||||| ||||| |||||||||||||| |
|
|
| T |
3584815 |
aggcccaagcgttgttgttaactgggtcagcgatgtggtcagcaaggttttttaaaggtccctttccggtcacgatggcttgaacaaagaatccaaacat |
3584914 |
T |
|
| Q |
112 |
agagaacatagctagcctaccattcttaagttctttcacctttatctctgcaaaagcctctgggtcgtcagcgaggcccaatgggtcaaagcttccacct |
211 |
Q |
| |
|
||||||||| |||| |||||||||||| |||||||| ||||||| ||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
3584915 |
agagaacatcgctaacctaccattcttgagttctttaacctttaactctgcaaaagcctcggggtcctcagcaaggcccaatgggtcaaagcttccacct |
3585014 |
T |
|
| Q |
212 |
gggtagagtgggtcgactacctcaccaagaggtccaccggcaatacggtaaccctcaacagctcccattaagataacttggacagcccatatagcaagga |
311 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3585015 |
ggatagagtgggtcgactacctcaccaagaggtccaccggcaatacggtaaccttcaacagctcccattaagataacttggacagcccaaatagcaagga |
3585114 |
T |
|
| Q |
312 |
tgctttgt |
319 |
Q |
| |
|
|||||||| |
|
|
| T |
3585115 |
tgctttgt |
3585122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 319
Target Start/End: Complemental strand, 3564425 - 3564117
Alignment:
| Q |
11 |
taggcccaagcgttgttgttgacggggtcagcgatatggtcggcaaggttctctagaggtccctttccagttacaatggcctgaacgaagaatccaaaca |
110 |
Q |
| |
|
||||||||||| |||||||| || |||||||| | |||||||| |||||||| | ||||||||||||||| |||||||| |||||||| |||||||||| |
|
|
| T |
3564425 |
taggcccaagcattgttgttaaccgggtcagcaaggtggtcggcgaggttctcgataggtccctttccagtcacaatggcttgaacgaaaaatccaaaca |
3564326 |
T |
|
| Q |
111 |
tagagaacatagctagcctaccattcttaagttctttcacctttatctctgcaaaagcctctgggtcgtcagcgaggcccaatgggtcaaagcttccacc |
210 |
Q |
| |
|
||||||||||||||| ||||||||| || |||||||||||||| | ||||||||||||||| || || || || |||||||| ||||||||||| ||||| |
|
|
| T |
3564325 |
tagagaacatagctaacctaccattttttagttctttcaccttcaactctgcaaaagcctcgggatcttcggcaaggcccaaggggtcaaagctgccacc |
3564226 |
T |
|
| Q |
211 |
tgggtagagtgggtcgactacctcaccaagaggtccaccggcaatacggtaaccctcaacagctcccattaagataacttggacagcccatatagcaagg |
310 |
Q |
| |
|
||||||||||||||| || |||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3564225 |
tgggtagagtgggtcaaccacctcaccgagaggtccaccagcaatacggtaaccctcaacagcacccattaagataacttggacagcccatatagcaagg |
3564126 |
T |
|
| Q |
311 |
atgctttgt |
319 |
Q |
| |
|
||||||||| |
|
|
| T |
3564125 |
atgctttgt |
3564117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 9 - 319
Target Start/End: Complemental strand, 3573122 - 3572812
Alignment:
| Q |
9 |
cataggcccaagcgttgttgttgacggggtcagcgatatggtcggcaaggttctctagaggtccctttccagttacaatggcctgaacgaagaatccaaa |
108 |
Q |
| |
|
|||||||||| || |||||||| || |||||||| | ||||| ||||| ||||||| |||||| ||||| |||||||| || ||||| ||||||||||| |
|
|
| T |
3573122 |
cataggcccatgcattgttgttaactgggtcagcaaggtggtcagcaagattctctataggtccttttccggttacaatagcttgaacaaagaatccaaa |
3573023 |
T |
|
| Q |
109 |
catagagaacatagctagcctaccattcttaagttctttcacctttatctctgcaaaagcctctgggtcgtcagcgaggcccaatgggtcaaagcttcca |
208 |
Q |
| |
|
||| || |||||||||| ||| ||||| || |||||||||||||||| ||||||||||||||||||||| ||||| ||||| ||||||||||| || ||| |
|
|
| T |
3573022 |
catggaaaacatagctaaccttccatttttgagttctttcacctttaactctgcaaaagcctctgggtcatcagctaggcctaatgggtcaaaactacca |
3572923 |
T |
|
| Q |
209 |
cctgggtagagtgggtcgactacctcaccaagaggtccaccggcaatacggtaaccctcaacagctcccattaagataacttggacagcccatatagcaa |
308 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3572922 |
cctgggtagagtgggtcgacaacctcaccgagaggtccacctgcaatacgataaccctcaacagcacccattaagataacttggacagcccatatagcaa |
3572823 |
T |
|
| Q |
309 |
ggatgctttgt |
319 |
Q |
| |
|
||||||||||| |
|
|
| T |
3572822 |
ggatgctttgt |
3572812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 9 - 319
Target Start/End: Complemental strand, 3570075 - 3569765
Alignment:
| Q |
9 |
cataggcccaagcgttgttgttgacggggtcagcgatatggtcggcaaggttctctagaggtccctttccagttacaatggcctgaacgaagaatccaaa |
108 |
Q |
| |
|
||||||||||||| |||||||| || || ||||| | ||||| || |||||||| | |||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
3570075 |
cataggcccaagcattgttgttaactggatcagcaaggtggtcagcgaggttctcaataggtccctttccggtgacaatggcctgaacgaagaatccaaa |
3569976 |
T |
|
| Q |
109 |
catagagaacatagctagcctaccattcttaagttctttcacctttatctctgcaaaagcctctgggtcgtcagcgaggcccaatgggtcaaagcttcca |
208 |
Q |
| |
|
||||||||||||||||| ||||||||| || |||||||||||||| | ||||||||||||||| || || || || |||||||| ||||||||||| ||| |
|
|
| T |
3569975 |
catagagaacatagctaacctaccattttttagttctttcaccttcaactctgcaaaagcctcgggatcttcggcaaggcccaaggggtcaaagctgcca |
3569876 |
T |
|
| Q |
209 |
cctgggtagagtgggtcgactacctcaccaagaggtccaccggcaatacggtaaccctcaacagctcccattaagataacttggacagcccatatagcaa |
308 |
Q |
| |
|
|||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||| || || |||||||||||||||||||| ||||||||||||| |
|
|
| T |
3569875 |
cctgggtagagtggatcgactacctcgcctagaggtccaccagcaatacggtaaccctccacggcgcccattaagataacttggactgcccatatagcaa |
3569776 |
T |
|
| Q |
309 |
ggatgctttgt |
319 |
Q |
| |
|
||||||||||| |
|
|
| T |
3569775 |
ggatgctttgt |
3569765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 12 - 319
Target Start/End: Complemental strand, 13276350 - 13276043
Alignment:
| Q |
12 |
aggcccaagcgttgttgttgacggggtcagcgatatggtcggcaaggttctctagaggtccctttccagttacaatggcctgaacgaagaatccaaacat |
111 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||| ||||| |||||||| || | |||||||||||| || |||||||| |||||||||||||||||||| |
|
|
| T |
13276350 |
aggcccaagcgttgttgttgaccgggtctgcgaggtggtcagcaaggttttccaaaggtccctttccggtcacaatggcttgaacgaagaatccaaacat |
13276251 |
T |
|
| Q |
112 |
agagaacatagctagcctaccattcttaagttctttcacctttatctctgcaaaagcctctgggtcgtcagcgaggcccaatgggtcaaagcttccacct |
211 |
Q |
| |
|
||| ||||| |||| |||||||||||||| |||||||| || | |||| ||||||| |||||||| || ||||| ||||||||||| ||||| |||||| |
|
|
| T |
13276250 |
agaaaacatggctaacctaccattcttaatctctttcactttcaactctacaaaagcttctgggtcatcggcgagacccaatgggtcgaagctaccacct |
13276151 |
T |
|
| Q |
212 |
gggtagagtgggtcgactacctcaccaagaggtccaccggcaatacggtaaccctcaacagctcccattaagataacttggacagcccatatagcaagga |
311 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||| |||||||| ||||||| |
|
|
| T |
13276150 |
gggtagagtgggtcaatcacctcaccaagaggtccaccagcaatacggtaaccctcaacagcacccatcaagataacttggcaggcccatatggcaagga |
13276051 |
T |
|
| Q |
312 |
tgctttgt |
319 |
Q |
| |
|
|||||||| |
|
|
| T |
13276050 |
tgctttgt |
13276043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 7e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 9 - 315
Target Start/End: Complemental strand, 38357442 - 38357136
Alignment:
| Q |
9 |
cataggcccaagcgttgttgttgacggggtcagcgatatggtcggcaaggttctctagaggtccctttccagttacaatggcctgaacgaagaatccaaa |
108 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| || | ||| |||||||||||||| | |||||||||||| || ||||| |||||||| |||||||| || |
|
|
| T |
38357442 |
cataggcccatgcgttgttgttgactgggtcggcaagatgatcggcaaggttctccaaaggtccctttccggtcacaatagcctgaacaaagaatccgaa |
38357343 |
T |
|
| Q |
109 |
catagagaacatagctagcctaccattcttaagttctttcacctttatctctgcaaaagcctctgggtcgtcagcgaggcccaatgggtcaaagcttcca |
208 |
Q |
| |
|
|||||||||||| |||| ||||| ||||| ||||| || ||||| | |||||| |||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
38357342 |
catagagaacatggctaatctaccgttcttgagttccttaaccttcaactctgcgaaagcctctgggtcgtcagctaggcccaatgggtcaaagctgcct |
38357243 |
T |
|
| Q |
209 |
cctgggtagagtgggtcgactacctcaccaagaggtccaccggcaatacggtaaccctcaacagctcccattaagataacttggacagcccatatagcaa |
308 |
Q |
| |
|
|||||||| |||||||| || |||||||||||||| ||||| |||||||||||||| |||||||| ||||| |||||||||||| |||||| || |||| |
|
|
| T |
38357242 |
cctgggtatagtgggtcaacaacctcaccaagaggaccaccagcaatacggtaaccttcaacagcgcccatcaagataacttgggtagcccagatggcaa |
38357143 |
T |
|
| Q |
309 |
ggatgct |
315 |
Q |
| |
|
| ||||| |
|
|
| T |
38357142 |
gaatgct |
38357136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 123
Target Start/End: Complemental strand, 42603234 - 42603125
Alignment:
| Q |
14 |
gcccaagcgttgttgttgacggggtcagcgatatggtcggcaaggttctctagaggtccctttccagttacaatggcctgaacgaagaatccaaacatag |
113 |
Q |
| |
|
||||| ||||||||| || |||||||| | ||||||| |||||||| | || ||||| ||||| |||||||| ||||| ||||| |||||||| | |
|
|
| T |
42603234 |
gcccatgcgttgttggcaacagggtcagcaacatggtcgtaaaggttctgaacggggcccttgccagtaacaatggcttgaacaaagaaaccaaacatgg |
42603135 |
T |
|
| Q |
114 |
agaacatagc |
123 |
Q |
| |
|
|||||||||| |
|
|
| T |
42603134 |
agaacatagc |
42603125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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