View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14097_low_3 (Length: 640)
Name: NF14097_low_3
Description: NF14097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14097_low_3 |
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| [»] scaffold0369 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 585; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 1 - 622
Target Start/End: Original strand, 17388015 - 17388638
Alignment:
| Q |
1 |
tctccaagaatatgtatatatggcaattccagaaggtgtcacatgcacaaaaccaaatcaagtttgtaaattgatgaaaagcttgtatggtttaaagcaa |
100 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17388015 |
tctccaagaagatgtatatatggcaattccagaaggtgtcacatgcacaaaaccaaatcaagtttgtaaattgatgaaaagcttgtatggtttaaagcaa |
17388114 |
T |
|
| Q |
101 |
gcaagtaggaagtggtatgaaaaattgacagcactattgattcaagaaggatatcaacaatcgactgctgattattcattattcactcttcacaaagata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
17388115 |
gcaagtaggaagtggtatgaaaaattgacagcactattgattcaagaaggatatcaacaatcaactgctgattattcattattcactcttcacaaagata |
17388214 |
T |
|
| Q |
201 |
atgaattcacagcgctcttgatttatgttgatgatgtcatacttgcaggtacatctctcactgaatttactagaattaaagctattctggacattaattt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17388215 |
atgaattcacagcgctcttgatttatgttgatgatgtcatacttgcaggtacatctctcactgaatttactagaattaaagctattctggacattaattt |
17388314 |
T |
|
| Q |
301 |
ttgcatcaaggacttaggagagttgaagtactttcttggattggaaatagcacattctaagtcaggtatcatcatatcac--aggaaatattgtctggat |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
17388315 |
ttgcatcaaggacttaggagagttgaagtactttcttggattggaaatagcacattctaagtcaggtatcatcatatcacagaggaaatattgtctggat |
17388414 |
T |
|
| Q |
399 |
ttattgagagattcaggactacttggtgcaaagcctgcttccacaccacttgatacttcaattaagcttcataatgacttgggaaagccttatgaagata |
498 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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|
| T |
17388415 |
ttattgagagattcaggactacttggtgcaaagcccgcttccacaccacttgatacttcaattaagctgcataatgacttaggaaagccttatgaagata |
17388514 |
T |
|
| Q |
499 |
tttcatcttatagaagactaattggaaagcttttgtatctaaataccacacgccctgatattacatttgcaacacaacaattaagccagttccttcactc |
598 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
17388515 |
tttcatcttatagaagactaattggaaagcttttgtatctaaataccacacgccctgatattacatttgcaacacaacaattaagtcagttccttcactc |
17388614 |
T |
|
| Q |
599 |
acctaccgtgacacactatcatgc |
622 |
Q |
| |
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|||||| ||||||||||||||||| |
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| T |
17388615 |
acctactgtgacacactatcatgc |
17388638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 129
Target Start/End: Complemental strand, 23884418 - 23884339
Alignment:
| Q |
50 |
aaaccaaatcaagtttgtaaattgatgaaaagcttgtatggtttaaagcaagcaagtaggaagtggtatgaaaaattgac |
129 |
Q |
| |
|
||||||||||| || || ||| |||| ||| | | ||||| |||||||||||||| ||||||||||||||||| ||||| |
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|
| T |
23884418 |
aaaccaaatcaggtctgcaaactgattaaatccctctatggattaaagcaagcaagcaggaagtggtatgaaaagttgac |
23884339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0369 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold0369
Description:
Target: scaffold0369; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 363 - 622
Target Start/End: Complemental strand, 15198 - 14937
Alignment:
| Q |
363 |
caggtatcatcatatcacag--gaaatattgtctggatttattgagagattcaggactacttggtgcaaagcctgcttccacaccacttgatacttcaat |
460 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
15198 |
caggtatcatcatatcacagaggaaatattgtctggatttattgagagattcaggactacttggtgcaaagcctacttccacaccacttgattcttcaat |
15099 |
T |
|
| Q |
461 |
taagcttcataatgacttgggaaagccttatgaagatatttcatcttatagaagactaattggaaagcttttgtatctaaataccacacgccctgatatt |
560 |
Q |
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|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15098 |
taagctgcataatgacttacgaaagccttatgaagatatttcatcttatagaagactaattggaaagcttttgtatctaaataccacacgccctgatatt |
14999 |
T |
|
| Q |
561 |
acatttgcaacacaacaattaagccagttccttcactcacctaccgtgacacactatcatgc |
622 |
Q |
| |
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| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
14998 |
atatttgcaacacaacaattaagtcagttccttcactcacctactgtgacacactatcatgc |
14937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 522 - 622
Target Start/End: Original strand, 15537666 - 15537766
Alignment:
| Q |
522 |
ggaaagcttttgtatctaaataccacacgccctgatattacatttgcaacacaacaattaagccagttccttcactcacctaccgtgacacactatcatg |
621 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
15537666 |
ggaaagcttttgtatctaaataccacacgccctgatattacatttgcaacacaacaattaagttagttccttcactcacctactgtgacacactatcatg |
15537765 |
T |
|
| Q |
622 |
c |
622 |
Q |
| |
|
| |
|
|
| T |
15537766 |
c |
15537766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 130
Target Start/End: Original strand, 3004675 - 3004755
Alignment:
| Q |
50 |
aaaccaaatcaagtttgtaaattgatgaaaagcttgtatggtttaaagcaagcaagtaggaagtggtatgaaaaattgaca |
130 |
Q |
| |
|
||||||||||| || || ||| |||| ||| | | ||||| |||||||||||||| ||||||||||| |||||||||||| |
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| T |
3004675 |
aaaccaaatcaggtatgcaaactgattaaatccctctatggattaaagcaagcaagcaggaagtggtaagaaaaattgaca |
3004755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 488 - 580
Target Start/End: Original strand, 3005115 - 3005207
Alignment:
| Q |
488 |
ttatgaagatatttcatcttatagaagactaattggaaagcttttgtatctaaataccacacgccctgatattacatttgcaacacaacaatt |
580 |
Q |
| |
|
||||||||||||||| |||||||| ||| | ||||| | || |||||||| || || ||| | ||||||||||| ||| |||||||||||| |
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|
| T |
3005115 |
ttatgaagatatttcttcttataggagattgattggtagactattgtatctgaacacaacaagacctgatattacctttataacacaacaatt |
3005207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 37737747 - 37737667
Alignment:
| Q |
50 |
aaaccaaatcaagtttgtaaattgatgaaaagcttgtatggtttaaagcaagcaagtaggaagtggtatgaaaaattgaca |
130 |
Q |
| |
|
||||||||||| || || ||| |||| ||| | | ||||| |||||||||||||| | |||||||||||||||||||||| |
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|
| T |
37737747 |
aaaccaaatcaggtatgcaaactgattaaatccctctatggattaaagcaagcaagcatgaagtggtatgaaaaattgaca |
37737667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 44288678 - 44288614
Alignment:
| Q |
86 |
tatggtttaaagcaagcaagtaggaagtggtatgaaaaattgacagcactattgattcaagaagg |
150 |
Q |
| |
|
||||| || ||||||||||| ||||||||||||||||| ||||| || |||| |||||| |||| |
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|
| T |
44288678 |
tatgggttgaagcaagcaagcaggaagtggtatgaaaagttgacttcattattaattcaacaagg |
44288614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 33460983 - 33461027
Alignment:
| Q |
86 |
tatggtttaaagcaagcaagtaggaagtggtatgaaaaattgaca |
130 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| || |||||| |
|
|
| T |
33460983 |
tatggtttgaagcaagcaagtaggaaatggtatgagaagttgaca |
33461027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 34825140 - 34825184
Alignment:
| Q |
86 |
tatggtttaaagcaagcaagtaggaagtggtatgaaaaattgaca |
130 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| || |||||| |
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|
| T |
34825140 |
tatggtttgaagcaagcaagtaggaaatggtatgagaagttgaca |
34825184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 37193420 - 37193464
Alignment:
| Q |
86 |
tatggtttaaagcaagcaagtaggaagtggtatgaaaaattgaca |
130 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| || |||||| |
|
|
| T |
37193420 |
tatggtttgaagcaagcaagtaggaaatggtatgagaagttgaca |
37193464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 50 - 130
Target Start/End: Original strand, 23681998 - 23682078
Alignment:
| Q |
50 |
aaaccaaatcaagtttgtaaattgatgaaaagcttgtatggtttaaagcaagcaagtaggaagtggtatgaaaaattgaca |
130 |
Q |
| |
|
||||||||||| || || ||| |||| ||| | | ||||| |||||||||||||| | |||||||||||||| ||||||| |
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|
| T |
23681998 |
aaaccaaatcatgtatgcaaactgattaaatccctctatggattaaagcaagcaagcatgaagtggtatgaaatattgaca |
23682078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 488 - 580
Target Start/End: Original strand, 23682432 - 23682524
Alignment:
| Q |
488 |
ttatgaagatatttcatcttatagaagactaattggaaagcttttgtatctaaataccacacgccctgatattacatttgcaacacaacaatt |
580 |
Q |
| |
|
||||||||||||||| |||||||| ||| | ||||| | || |||||||| || || ||| | ||||||||||| ||| |||||||||||| |
|
|
| T |
23682432 |
ttatgaagatatttcttcttataggagattgattggtagactattgtatctgaacacaacaagacctgatattacctttataacacaacaatt |
23682524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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