View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14097_low_30 (Length: 253)

Name: NF14097_low_30
Description: NF14097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14097_low_30
NF14097_low_30
[»] chr7 (4 HSPs)
chr7 (19-248)||(11242157-11242386)
chr7 (22-214)||(11269000-11269197)
chr7 (22-214)||(11281004-11281201)
chr7 (19-124)||(6848021-6848127)
[»] chr8 (2 HSPs)
chr8 (19-170)||(9798663-9798816)
chr8 (20-169)||(15201683-15201837)
[»] chr3 (1 HSPs)
chr3 (19-123)||(16999364-16999468)
[»] chr1 (2 HSPs)
chr1 (37-133)||(27318397-27318494)
chr1 (22-76)||(8236099-8236153)
[»] chr5 (2 HSPs)
chr5 (22-96)||(42687876-42687950)
chr5 (19-59)||(20684884-20684924)
[»] chr4 (1 HSPs)
chr4 (30-105)||(21276696-21276772)


Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 11242386 - 11242157
Alignment:
Q  19 ctatttatagcctaaaacctcaagacaatgcattaaactcggatttacaagctttaaaataggaaaaccaaagagttttctaacagctcttgctgacagc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11242386 ctatttatagcctaaaacctcaagacaatgcattaaactcggatttacaagctttaaaataggaaaaccaaagagttttctaacagctcttgctgacagc 11242287  T
Q  119 aaaaacacacggtctccggatcgtgcacttttcagcttccaagtgttaaaatattggacatggtcagcaaggaccgtgtgtttttccaactattcannnn 218  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||        
T  11242286 aaaaacatacggtctccggatcgtgcacttttcagcttccaagtgttaaaatattggacatggtcagcaaggaccgtgtgtttttccagctattcatttt 11242187  T
Q  219 nnnnnncttttcttcaatttctctgctcct 248  Q
          ||||||||||||||||||||||||    
T  11242186 ttttttcttttcttcaatttctctgctcct 11242157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 22 - 214
Target Start/End: Original strand, 11269000 - 11269197
Alignment:
Q  22 tttatagcctaaaacctcaagacaatgcattaaactcggatttacaagctttaaaataggaaaaccaaagagttttctaacagctcttgctgacagcaaa 121  Q
    |||||| |||||||||| |||||||||| ||||||||  ||| |||||| | |||||||||||||||||||||||| |||||||||| ||| ||||||||    
T  11269000 tttataacctaaaaccttaagacaatgccttaaactcatatt-acaagcataaaaataggaaaaccaaagagttttgtaacagctctagctaacagcaaa 11269098  T
Q  122 aacacacggtct-----ccggatcgtgcacttttcagcttccaagtgttaaaatattggacatgg-tcagcaaggaccgtgtgtttttccaactattca 214  Q
    ||| ||||| ||      | || | |||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||| |||||||    
T  11269099 aacgcacggcctgcatagcagaccatgcacttttcagcttccaagtgttaaaatactggacatggattagcaaggaccgtgtgtttttccagctattca 11269197  T

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Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 22 - 214
Target Start/End: Complemental strand, 11281201 - 11281004
Alignment:
Q  22 tttatagcctaaaacctcaagacaatgcattaaactcggatttacaagctttaaaataggaaaaccaaagagttttctaacagctcttgctgacagcaaa 121  Q
    |||||| |||||||||| || ||||||||||||||||  ||| |||||||| |||||||||||||||||||||||| |||||||||| ||| ||||||||    
T  11281201 tttataacctaaaaccttaacacaatgcattaaactcatatt-acaagcttaaaaataggaaaaccaaagagttttgtaacagctctagctaacagcaaa 11281103  T
Q  122 aacacacggtct-----ccggatcgtgcacttttcagcttccaagtgttaaaatattggacatgg-tcagcaaggaccgtgtgtttttccaactattca 214  Q
    ||| |||||  |      | || | |||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||| | |||||||    
T  11281102 aacgcacggcttgcataacagaccatgcacttttcagcttccaagtgttaaaatactggacatggattagcaaggaccgtgtgtttttctagctattca 11281004  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 6848021 - 6848127
Alignment:
Q  19 ctatttatagcctaaaacctcaagacaatgcattaaactcggatttacaagctttaaaa-taggaaaaccaaagagttttctaacagctcttgctgacag 117  Q
    |||||||||||||| ||||||||| ||| ||||||||||||  |||||| |||||||||  | ||||| ||||||||||| ||| |||||   |||||||    
T  6848021 ctatttatagcctagaacctcaaggcaaggcattaaactcgtttttacaggctttaaaacaaagaaaatcaaagagttttgtaaaagctccaactgacag 6848120  T
Q  118 caaaaac 124  Q
     ||||||    
T  6848121 gaaaaac 6848127  T

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Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 9798663 - 9798816
Alignment:
Q  19 ctatttatagcctaaaacctcaagacaatgcattaaactcggatttacaagctttaaaatagga-aaaccaaagagttttctaacagctcttgctgacag 117  Q
    |||||||||||||| |||||| |||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||    
T  9798663 ctatttatagcctagaacctctagacaaggcattaaactcgaatttacaagctttaaaataggagaaaccaaagagttttgtaacagctctagctgacag 9798762  T
Q  118 caaaaacacacggtct-ccggatcgtgcacttttcagcttccaagtgttaaaat 170  Q
    ||||||| |||||||| |   | ||||||||||||| |||||||||||||||||    
T  9798763 caaaaacgcacggtctgcacaaccgtgcacttttcaacttccaagtgttaaaat 9798816  T

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Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 169
Target Start/End: Complemental strand, 15201837 - 15201683
Alignment:
Q  20 tatttatagcctaaaacctcaagacaatgcattaaactcggatttacaagctttaaaataggaaaaccaaagagttttctaacagctcttgctgacagca 119  Q
    ||||||||||||| |||||||||||||   |||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||| | ||||| ||    
T  15201837 tatttatagcctagaacctcaagacaagatattaaacttggatttacaaactttaaaataggaaaaccaaagagttttgtaacagctctagttgacaaca 15201738  T
Q  120 aaaacacacggtctcc-----ggatcgtgcacttttcagcttccaagtgttaaaa 169  Q
    ||||| |||||| | |      || ||||||||||||||||| ||||||||||||    
T  15201737 aaaacgcacggtatgcacagtagaccgtgcacttttcagcttacaagtgttaaaa 15201683  T

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Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 16999364 - 16999468
Alignment:
Q  19 ctatttatagcctaaaacctcaagacaatgcattaaactcggatttacaagctttaaaataggaaaaccaaagagttttctaacagctcttgctgacagc 118  Q
    |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||| ||||||||||    
T  16999364 ctatttatagcctaaaacctcaagacatgacattaaactcggatttacaagctttaaaataggaaaaccgaagagttttgtaacatctcctgctgacagc 16999463  T
Q  119 aaaaa 123  Q
    |||||    
T  16999464 aaaaa 16999468  T

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Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 27318494 - 27318397
Alignment:
Q  37 ctcaagacaatgcattaaactcggatttacaagctttaaaatagg-aaaaccaaagagttttctaacagctcttgctgacagcaaaaacacacggtct 133  Q
    |||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||  ||||||||||||||| ||||||||    
T  27318494 ctcaagacaaggcattaaactcgaatttacaagctttaaaatagggaaaaccaaagagttttgtaacagctccagctgacagcaaaaacgcacggtct 27318397  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 8236153 - 8236099
Alignment:
Q  22 tttatagcctaaaacctcaagacaatgcattaaactcggatttacaagctttaaa 76  Q
    ||||||||||||||||||||||||| ||||||||| || | |||||| |||||||    
T  8236153 tttatagcctaaaacctcaagacaaggcattaaacacgaaattacaatctttaaa 8236099  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 42687876 - 42687950
Alignment:
Q  22 tttatagcctaaaacctcaagacaatgcattaaactcggatttacaagctttaaaataggaaaaccaaagagttt 96  Q
    |||||||||||||||||||||||||  ||||||||||  ||||| |||||||||||| |||||||||||||||||    
T  42687876 tttatagcctaaaacctcaagacaagacattaaactcatatttataagctttaaaatgggaaaaccaaagagttt 42687950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 20684924 - 20684884
Alignment:
Q  19 ctatttatagcctaaaacctcaagacaatgcattaaactcg 59  Q
    ||||||||||||| ||||||||||||||  |||||||||||    
T  20684924 ctatttatagcctgaaacctcaagacaagacattaaactcg 20684884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 21276772 - 21276696
Alignment:
Q  30 ctaaaacctcaagacaatgcattaaactcggatttacaagctttaaaata-ggaaaaccaaagagttttctaacagc 105  Q
    |||||| ||||||||||  |||||||| || | |||||| ||||||| || |||||||||||||||||| |||||||    
T  21276772 ctaaaatctcaagacaagacattaaacacgaaattacaaactttaaattaaggaaaaccaaagagttttgtaacagc 21276696  T

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