View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14097_low_32 (Length: 247)

Name: NF14097_low_32
Description: NF14097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14097_low_32
NF14097_low_32
[»] chr7 (25 HSPs)
chr7 (24-235)||(11324870-11325081)
chr7 (142-247)||(39182269-39182373)
chr7 (137-246)||(8346549-8346658)
chr7 (137-247)||(7730358-7730467)
chr7 (137-247)||(14055255-14055365)
chr7 (137-247)||(14365283-14365393)
chr7 (137-247)||(24725492-24725602)
chr7 (142-247)||(8571252-8571357)
chr7 (155-246)||(8343816-8343907)
chr7 (137-247)||(24990086-24990196)
chr7 (137-247)||(26281324-26281434)
chr7 (137-247)||(11326390-11326500)
chr7 (137-247)||(22687679-22687789)
chr7 (137-246)||(8330061-8330170)
chr7 (137-247)||(44944860-44944974)
chr7 (137-247)||(21846441-21846550)
chr7 (137-247)||(27221422-27221532)
chr7 (157-246)||(9685260-9685349)
chr7 (155-247)||(4247378-4247470)
chr7 (137-247)||(5058533-5058643)
chr7 (179-247)||(17811393-17811461)
chr7 (137-247)||(5715294-5715403)
chr7 (188-247)||(1977707-1977766)
chr7 (136-206)||(4574474-4574544)
chr7 (140-247)||(26617487-26617598)
[»] chr8 (19 HSPs)
chr8 (137-247)||(15294674-15294784)
chr8 (137-247)||(15475043-15475153)
chr8 (137-247)||(5922053-5922163)
chr8 (150-247)||(3094268-3094365)
chr8 (137-247)||(11879604-11879714)
chr8 (137-247)||(11897020-11897130)
chr8 (137-247)||(17646997-17647107)
chr8 (155-245)||(29384333-29384423)
chr8 (137-247)||(31424167-31424277)
chr8 (179-247)||(19704470-19704538)
chr8 (145-247)||(22910217-22910319)
chr8 (179-247)||(6810868-6810935)
chr8 (137-208)||(477101-477172)
chr8 (137-247)||(45403033-45403143)
chr8 (182-247)||(23142224-23142289)
chr8 (142-212)||(24056618-24056688)
chr8 (137-235)||(15761466-15761564)
chr8 (157-247)||(27836479-27836569)
chr8 (181-218)||(7489331-7489368)
[»] chr5 (14 HSPs)
chr5 (137-247)||(18051545-18051655)
chr5 (137-247)||(43234872-43234982)
chr5 (137-247)||(20923722-20923832)
chr5 (155-247)||(19578964-19579056)
chr5 (137-247)||(18843719-18843829)
chr5 (137-247)||(21059171-21059280)
chr5 (137-247)||(22645734-22645844)
chr5 (137-243)||(23172451-23172557)
chr5 (137-247)||(38158269-38158379)
chr5 (142-247)||(27340201-27340306)
chr5 (137-207)||(19042444-19042514)
chr5 (182-240)||(20320992-20321050)
chr5 (182-247)||(19979648-19979713)
chr5 (182-247)||(41688680-41688745)
[»] chr4 (20 HSPs)
chr4 (137-247)||(5361978-5362088)
chr4 (137-247)||(8011231-8011341)
chr4 (142-247)||(8889237-8889342)
chr4 (137-247)||(9770116-9770226)
chr4 (137-246)||(23064979-23065088)
chr4 (137-247)||(13023571-13023684)
chr4 (157-246)||(13551638-13551727)
chr4 (137-237)||(7044731-7044831)
chr4 (137-237)||(18459733-18459833)
chr4 (137-247)||(10142903-10143013)
chr4 (155-247)||(9911426-9911518)
chr4 (132-237)||(7815556-7815661)
chr4 (179-247)||(37240304-37240371)
chr4 (137-236)||(4156767-4156866)
chr4 (155-238)||(6347088-6347171)
chr4 (155-245)||(17466101-17466191)
chr4 (179-237)||(24719563-24719621)
chr4 (169-247)||(36120860-36120938)
chr4 (137-213)||(7452424-7452499)
chr4 (179-247)||(5375710-5375778)
[»] chr3 (22 HSPs)
chr3 (137-247)||(29067288-29067398)
chr3 (137-227)||(24649724-24649814)
chr3 (142-247)||(21963438-21963543)
chr3 (142-247)||(21985874-21985979)
chr3 (142-247)||(30727706-30727811)
chr3 (137-247)||(28745774-28745884)
chr3 (142-246)||(22137287-22137391)
chr3 (137-237)||(27676360-27676460)
chr3 (137-247)||(20756043-20756153)
chr3 (137-246)||(3449308-3449416)
chr3 (143-237)||(10872971-10873065)
chr3 (179-246)||(24620216-24620283)
chr3 (180-247)||(39427949-39428016)
chr3 (137-237)||(15806531-15806630)
chr3 (142-246)||(17064330-17064434)
chr3 (155-247)||(22494796-22494888)
chr3 (155-228)||(17796508-17796581)
chr3 (155-228)||(19104948-19105021)
chr3 (137-247)||(8156145-8156256)
chr3 (137-245)||(25870389-25870501)
chr3 (155-228)||(17796290-17796363)
chr3 (155-228)||(19104730-19104803)
[»] chr2 (15 HSPs)
chr2 (137-247)||(30432423-30432533)
chr2 (137-247)||(31237992-31238102)
chr2 (137-247)||(23863336-23863446)
chr2 (137-247)||(1404787-1404897)
chr2 (161-247)||(19491885-19491970)
chr2 (137-247)||(36429852-36429962)
chr2 (169-247)||(35565969-35566047)
chr2 (182-247)||(25539241-25539306)
chr2 (150-239)||(1690785-1690874)
chr2 (137-246)||(20063718-20063827)
chr2 (169-235)||(31023259-31023325)
chr2 (179-225)||(34841602-34841648)
chr2 (156-218)||(15588894-15588956)
chr2 (149-227)||(16766726-16766804)
chr2 (137-247)||(31578009-31578118)
[»] chr1 (21 HSPs)
chr1 (137-247)||(13100195-13100305)
chr1 (137-247)||(21846283-21846393)
chr1 (137-247)||(9327230-9327340)
chr1 (137-247)||(13276281-13276391)
chr1 (137-247)||(23528660-23528770)
chr1 (142-247)||(17056014-17056119)
chr1 (169-246)||(41032686-41032763)
chr1 (137-228)||(25146802-25146893)
chr1 (137-247)||(9955050-9955160)
chr1 (137-247)||(12513285-12513395)
chr1 (137-247)||(19009961-19010071)
chr1 (137-247)||(9352078-9352188)
chr1 (137-247)||(42180080-42180190)
chr1 (137-247)||(18304825-18304936)
chr1 (137-208)||(30619079-30619150)
chr1 (142-247)||(16125470-16125578)
chr1 (137-214)||(12800629-12800706)
chr1 (137-235)||(14074397-14074495)
chr1 (159-237)||(18337547-18337625)
chr1 (137-247)||(17869765-17869870)
chr1 (137-247)||(9128855-9128965)
[»] chr6 (22 HSPs)
chr6 (150-247)||(27233292-27233389)
chr6 (137-247)||(6943475-6943585)
chr6 (137-247)||(17250061-17250171)
chr6 (145-247)||(23897823-23897925)
chr6 (137-247)||(30912427-30912537)
chr6 (137-247)||(26053311-26053421)
chr6 (137-247)||(26073364-26073474)
chr6 (137-245)||(15528127-15528235)
chr6 (137-247)||(7918396-7918506)
chr6 (137-247)||(10509038-10509148)
chr6 (137-247)||(17543755-17543865)
chr6 (142-247)||(19748342-19748447)
chr6 (142-246)||(22498901-22499005)
chr6 (137-246)||(11327587-11327696)
chr6 (177-246)||(21354784-21354853)
chr6 (137-247)||(7223523-7223626)
chr6 (142-218)||(18491081-18491157)
chr6 (192-247)||(17103254-17103309)
chr6 (150-210)||(3573984-3574044)
chr6 (137-247)||(2912263-2912372)
chr6 (170-235)||(4841946-4842011)
chr6 (137-217)||(33583774-33583854)
[»] scaffold0510 (1 HSPs)
scaffold0510 (145-247)||(115-218)
[»] scaffold0042 (1 HSPs)
scaffold0042 (137-247)||(93721-93829)
[»] scaffold0186 (1 HSPs)
scaffold0186 (137-247)||(8447-8557)
[»] scaffold0417 (1 HSPs)
scaffold0417 (144-246)||(7471-7573)
[»] scaffold0048 (1 HSPs)
scaffold0048 (137-211)||(48839-48913)
[»] scaffold0603 (1 HSPs)
scaffold0603 (137-212)||(9070-9145)
[»] scaffold0036 (1 HSPs)
scaffold0036 (186-237)||(37191-37242)


Alignment Details
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 24 - 235
Target Start/End: Original strand, 11324870 - 11325081
Alignment:
Q  24 tgtgacttccgattctcggtttaactggttcaatcagttaaaccgttatagaatcgattgaaccggatatcaaataaattaataaataatacataatatt 123  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  11324870 tgtgacttccgattctcggtttaactggttcaaccaattaaaccgttatagaatcgattgaacctgatatcaattaaattaataaataatacataatatt 11324969  T
Q  124 agaatccagacttttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaa 223  Q
    | |||| |   |||| ||||||||| |||| ||||||||||||  | |||||| ||| |||||||||||||||||||||||||||||| |||||| | ||    
T  11324970 aaaatctaagattttttgaaaatcccgacttaaatcctaaaattcatgattttgggattttcttcaccttcaacgactcaaatccataatagaattctaa 11325069  T
Q  224 aataggtaaaat 235  Q
    |||||| |||||    
T  11325070 aataggcaaaat 11325081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 142 - 247
Target Start/End: Original strand, 39182269 - 39182373
Alignment:
Q  142 aaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcg 241  Q
    |||||||||||| ||||||||||||| ||||||||  ||||| ||||||||||||||||| |||||||||||||||| | |||||||| |||||||||||    
T  39182269 aaaatcctgacttaaatcctaaaatctaggattttgcgactt-cttcaccttcaacgactgaaatccatagtagaatcccaaaataggcaaaatccatcg 39182367  T
Q  242 attttg 247  Q
    ||||||    
T  39182368 attttg 39182373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 137 - 246
Target Start/End: Complemental strand, 8346658 - 8346549
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| |||||||||||  ||||  ||||||  ||||||||  |||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||    
T  8346658 ttgtcaaaatcctgacctaaatattaaaatttaggattttgcgactttcttcaccttcaacgactcaaatccatagtagaatcccaaaataggaaaaatc 8346559  T
Q  237 catcgatttt 246  Q
    ||||||||||    
T  8346558 catcgatttt 8346549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 7730467 - 7730358
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| |||||||||||| ||||||||||||| ||| ||||  ||||||||||||||| ||| ||||||||||| |||||||| | |||||||| ||||||    
T  7730467 ttgtcaaaatcctgacttaaatcctaaaatccagg-ttttgcgactttcttcacctttaacaactcaaatccacagtagaattccaaaataggaaaaatc 7730369  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  7730368 catcgattttg 7730358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 14055255 - 14055365
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    ||||||||||||  ||| | ||||||||||| | ||||||  ||||||||||||||||||||||||||||| |||||||||| | |||||||| ||||||    
T  14055255 ttgtgaaaatccccacttatatcctaaaatccaagattttgcgactttcttcaccttcaacgactcaaatctatagtagaattctaaaataggcaaaatc 14055354  T
Q  237 catcgattttg 247  Q
    ||| |||||||    
T  14055355 catagattttg 14055365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 14365283 - 14365393
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    ||||||||||||  ||| | ||||||||||| | ||||||  ||||||||||||||||||||||||||||| |||||||||| | |||||||| ||||||    
T  14365283 ttgtgaaaatccccacttatatcctaaaatccaagattttgcgactttcttcaccttcaacgactcaaatctatagtagaattctaaaataggcaaaatc 14365382  T
Q  237 catcgattttg 247  Q
    ||| |||||||    
T  14365383 catagattttg 14365393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 24725602 - 24725492
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| ||||||||||||| | ||||||  ||||||||||||||||||| ||||||||||||||||||||   |||||||| ||||||    
T  24725602 ttgtcaaaatccagacttaaatcctaaaatccaagattttacgactttcttcaccttcaacaactcaaatccatagtagaatcgcaaaataggcaaaatc 24725503  T
Q  237 catcgattttg 247  Q
    |||| ||||||    
T  24725502 catcaattttg 24725492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 142 - 247
Target Start/End: Original strand, 8571252 - 8571357
Alignment:
Q  142 aaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcg 241  Q
    ||||||| |||| ||||| ||||||| ||||||||  ||||||||||||||| |||||||||||||||||||||||| | |||||||  |||| ||||||    
T  8571252 aaaatcccgacttaaatcataaaatccaggattttgcgactttcttcacctttaacgactcaaatccatagtagaatcctaaaatagagaaaaaccatcg 8571351  T
Q  242 attttg 247  Q
    ||||||    
T  8571352 attttg 8571357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 155 - 246
Target Start/End: Complemental strand, 8343907 - 8343816
Alignment:
Q  155 aaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcgatttt 246  Q
    |||||||||||||  |||||||  |||||||||||||||||||||||||||||||||||||||| | |||||| | |||||||||| |||||    
T  8343907 aaatcctaaaatcctggattttgcgactttcttcaccttcaacgactcaaatccatagtagaatcccaaaatatgaaaaatccatcaatttt 8343816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 24990196 - 24990086
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||| | |||| |||||| |||||  ||||||||  ||||||||| |||| ||||||||||||||||||||||||| | |||||||| ||||||    
T  24990196 ttgtcaaaattccgacttaaatccaaaaatttaggattttgtgactttctttacctccaacgactcaaatccatagtagaatcctaaaataggcaaaatc 24990097  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  24990096 catcgattttg 24990086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 26281434 - 26281324
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||| | |||| ||||| ||||||  ||||||||  |||||||||||||||||||||||||||||||| ||||||| | |||||| | ||||||    
T  26281434 ttgtcaaaattccgacttaaatcataaaattcaggattttgcgactttcttcaccttcaacgactcaaatccattgtagaattccaaaataagcaaaatc 26281335  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  26281334 catcgattttg 26281324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 11326390 - 11326500
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| |||||||  ||| ||||||||||||  ||||||||  ||||||||||||||||| ||||| ||||||||||||||||   |||||||| ||||||    
T  11326390 ttgtcaaaatcccaacttaaatcctaaaatttaggattttgcgactttcttcaccttcagcgactaaaatccatagtagaatcttaaaataggcaaaatc 11326489  T
Q  237 catcgattttg 247  Q
     ||||||||||    
T  11326490 tatcgattttg 11326500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 22687789 - 22687679
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| ||||||||||||  |||| |||  ||||||||||| ||||||| |||||||||||| | ||||| | |||||||| ||||||    
T  22687789 ttgtcaaaatcccgacttaaatcctaaaattcaggaatttgcgactttcttcaacttcaacaactcaaatccatcgcagaatcccaaaataggcaaaatc 22687690  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  22687689 catcgattttg 22687679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 137 - 246
Target Start/End: Complemental strand, 8330170 - 8330061
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| |||||||||||  |||| |||||||  | ||||||  ||||||||||||||||||||| |||||||||||||||||| | |||||||| |||||     
T  8330170 ttgtcaaaatcctgacctaaattctaaaattcatgattttgcgactttcttcaccttcaacgattcaaatccatagtagaatcccaaaataggaaaaatt 8330071  T
Q  237 catcgatttt 246  Q
    ||| ||||||    
T  8330070 cattgatttt 8330061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 44944974 - 44944860
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcac----cttcaacgactcaaatccatagtagaatacaaaaataggtaa 232  Q
    |||| ||||||| |||| ||||||||||||  ||||||||  ||||||||||||    ||||||||| |||||||||||||||||| | |||||||  ||    
T  44944974 ttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcactcaccttcaacgattcaaatccatagtagaatcctaaaatagtcaa 44944875  T
Q  233 aatccatcgattttg 247  Q
    |||||||||||||||    
T  44944874 aatccatcgattttg 44944860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 21846550 - 21846441
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| |||| |||||||  ||||||||  |||||| ||||| |||||||||||| |||||||||||||| | |||| ||||||||||    
T  21846550 ttgtcaaaatcccgacttaaattctaaaattcaggattttgcgacttt-ttcacattcaacgactcacatccatagtagaattctaaaacaggtaaaatc 21846452  T
Q  237 catcgattttg 247  Q
     ||||||||||    
T  21846451 aatcgattttg 21846441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 27221422 - 27221532
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| |||||||  ||| |||| |||||||  ||||||||  ||||||||||| |||||||||||||||| |||||||||||   ||||| || ||||||    
T  27221422 ttgttaaaatcccaacttaaattctaaaattcaggattttgcgactttcttcatcttcaacgactcaaatacatagtagaatcttaaaattggcaaaatc 27221521  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  27221522 catcgattttg 27221532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 246
Target Start/End: Complemental strand, 9685349 - 9685260
Alignment:
Q  157 atcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcgatttt 246  Q
    ||||||||||  ||||||||  |||||| |||||||||||||||||||||||||| ||||||   |||||||  ||||||||||||||||    
T  9685349 atcctaaaatttaggattttgcgacttttttcaccttcaacgactcaaatccatattagaatttcaaaatagacaaaatccatcgatttt 9685260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 155 - 247
Target Start/End: Original strand, 4247378 - 4247470
Alignment:
Q  155 aaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcgattttg 247  Q
    ||||||||||||  ||||||||   ||||||||||| |||||| ||| |||||||||||||||| | |||||||| ||||| |||||||||||    
T  4247378 aaatcctaaaattcaggattttgtaactttcttcactttcaacaacttaaatccatagtagaatcccaaaataggcaaaattcatcgattttg 4247470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 5058533 - 5058643
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| ||||||||||||  || |||||  || |||||||||||||||||||  ||||||||||||||||   |||||||| ||||||    
T  5058533 ttgtcaaaatcccgacttaaatcctaaaattcagaattttgcgattttcttcaccttcaacgacctaaatccatagtagaatcttaaaataggcaaaatc 5058632  T
Q  237 catcgattttg 247  Q
    |  ||||||||    
T  5058633 ctacgattttg 5058643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 247
Target Start/End: Original strand, 17811393 - 17811461
Alignment:
Q  179 gactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcgattttg 247  Q
    |||||| |||||||||||||||||||||||||||||||||   |||||||  |||||| ||||||||||    
T  17811393 gacttttttcaccttcaacgactcaaatccatagtagaattttaaaatagacaaaatcgatcgattttg 17811461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 5715294 - 5715403
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| ||||||||||||  ||||||||  |||||| | |||||||||| ||| |||| ||||||||||| | |||||| | |||||     
T  5715294 ttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgacttt-tacaccttcaacaacttaaattcatagtagaattccaaaataagcaaaatt 5715392  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  5715393 catcgattttg 5715403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 1977707 - 1977766
Alignment:
Q  188 caccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcgattttg 247  Q
    ||||||||||||||||||||||||||||||| | |||||| | ||||| | |||||||||    
T  1977707 caccttcaacgactcaaatccatagtagaatcctaaaatatgcaaaattcgtcgattttg 1977766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 4574474 - 4574544
Alignment:
Q  136 tttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaat 206  Q
    |||||||||||| ||||| ||||||||||||| || |||||  ||||||  ||||||||||||| ||||||    
T  4574474 tttgtgaaaatcatgacttaaatcctaaaatccagaattttgcgactttactcaccttcaacgattcaaat 4574544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 247
Target Start/End: Complemental strand, 26617598 - 26617487
Alignment:
Q  140 tgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatcc--atagtagaatac--aaaaataggtaaaat 235  Q
    ||||||| ||||||  |||||||||||  ||||||||  |||||| |||||||||||||||  |||| |  |||||||||| |  ||| ||||| |||||    
T  26617598 tgaaaattctgactttaatcctaaaattcaggattttgcgacttttttcaccttcaacgacataaattcatatagtagaattctaaaatataggcaaaat 26617499  T
Q  236 ccatcgattttg 247  Q
    | ||||||||||    
T  26617498 ctatcgattttg 26617487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 15294674 - 15294784
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| ||||||||||||  ||||||||  |||||| |||||||||||||||||||||| |||||||||||| |||||||| ||||||    
T  15294674 ttgtaaaaatcccgacttaaatcctaaaattcaggattttgcgacttttttcaccttcaacgactcaaatcgatagtagaataccaaaataggcaaaatc 15294773  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  15294774 catcgattttg 15294784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 15475043 - 15475153
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| ||||||||||||  ||||||||  |||||| |||||||||||||||||||||| |||||||||||| |||||||| ||||||    
T  15475043 ttgtaaaaatcccgacttaaatcctaaaattcaggattttgcgacttttttcaccttcaacgactcaaatcgatagtagaataccaaaataggcaaaatc 15475142  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  15475143 catcgattttg 15475153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 5922053 - 5922163
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| ||||||||||||| ||||||||  ||||||||||||||||||||||| | |||||||||||||| | |||||||  ||||||    
T  5922053 ttgtcaaaatcccgacttaaatcctaaaatccaggattttgtgactttcttcaccttcaacgacttatatccatagtagaatcccaaaatagacaaaatc 5922152  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  5922153 catcgattttg 5922163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 3094365 - 3094268
Alignment:
Q  150 gactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcgattttg 247  Q
    |||| ||||| ||||||  ||||||||   ||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||    
T  3094365 gacttaaatcttaaaattcaggattttgctactttcttcaccttcaacgactcaaatccatagtagaatcctaaaataggcaaaatccatcgattttg 3094268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 11879604 - 11879714
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||| |||||| ||||||||||||  ||||||||   ||||||||||| |||||||||||||||| |||||||||| | |||||||| |||||     
T  11879604 ttgtcaaaattctgacttaaatcctaaaattcaggattttgcaactttcttcactttcaacgactcaaatctatagtagaatcctaaaataggaaaaatt 11879703  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  11879704 catcgattttg 11879714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 11897020 - 11897130
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||| |||||| ||||||||||||  ||||||||   ||||||||||| |||||||||||||||| |||||||||| | |||||||| |||||     
T  11897020 ttgtcaaaattctgacttaaatcctaaaattcaggattttgcaactttcttcactttcaacgactcaaatctatagtagaatcctaaaataggaaaaatt 11897119  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  11897120 catcgattttg 11897130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 17646997 - 17647107
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||| | |||| ||||| ||||||  ||||||||  |||||||||||||||||||||||||||| ||||||||||| | |||||||| |||||     
T  17646997 ttgtcaaaattccgacttaaatcataaaattcaggattttgcgactttcttcaccttcaacgactcaaattcatagtagaatcccaaaataggaaaaatt 17647096  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  17647097 catcgattttg 17647107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 155 - 245
Target Start/End: Complemental strand, 29384423 - 29384333
Alignment:
Q  155 aaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcgattt 245  Q
    |||||||||||||   ||||||  |||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||| |||||||||    
T  29384423 aaatcctaaaatcttagattttgcgactttcttcaccttcaacgactcaaatccatagtataatccaaaaataggcaaaattcatcgattt 29384333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 31424167 - 31424277
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| |||||||||||| |||| |||||||  ||||||||  |||||||||| | ||||||||||||||||||||| ||||| | |||||||| ||||||    
T  31424167 ttgtcaaaatcctgacttaaattctaaaattcaggattttacgactttcttccctttcaacgactcaaatccatagaagaatcccaaaataggcaaaatc 31424266  T
Q  237 catcgattttg 247  Q
    ||| |||||||    
T  31424267 cattgattttg 31424277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 19704538 - 19704470
Alignment:
Q  179 gactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcgattttg 247  Q
    |||||||||||||||||||||||||||||||||||||||| | | |||||| |||||||||||||||||    
T  19704538 gactttcttcaccttcaacgactcaaatccatagtagaattccataataggcaaaatccatcgattttg 19704470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 145 - 247
Target Start/End: Complemental strand, 22910319 - 22910217
Alignment:
Q  145 atcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcgatt 244  Q
    |||| |||| ||||||||||||  ||||||||  |||||||||||| |||||||||||||||| ||||||||||   |||||||| ||||||||| ||||    
T  22910319 atcccgacttaaatcctaaaatttaggattttacgactttcttcacattcaacgactcaaatctatagtagaatcttaaaataggcaaaatccattgatt 22910220  T
Q  245 ttg 247  Q
    |||    
T  22910219 ttg 22910217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 179 - 247
Target Start/End: Original strand, 6810868 - 6810935
Alignment:
Q  179 gactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcgattttg 247  Q
    ||||||||||||||||||||||||||||||||||||||||   |||||||| ||||| |||||||||||    
T  6810868 gactttcttcaccttcaacgactcaaatccatagtagaattttaaaataggcaaaat-catcgattttg 6810935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 208
Target Start/End: Complemental strand, 477172 - 477101
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatcc 208  Q
    |||| |||||||||||| ||||||||||||| ||||||||  |||||||||||||||||| |||| ||||||    
T  477172 ttgtcaaaatcctgacttaaatcctaaaatccaggattttgtgactttcttcaccttcaatgacttaaatcc 477101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 45403033 - 45403143
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||  |||| |||| |||||||| | ||||||  ||||||||| ||||||||||||| |||||||||| |||||   |||||| | ||||||    
T  45403033 ttgtcaaaatcgcgacttaaattctaaaatccaagattttgcgactttcttgaccttcaacgacttaaatccatagaagaatctcaaaataagcaaaatc 45403132  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  45403133 catcgattttg 45403143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 23142224 - 23142289
Alignment:
Q  182 tttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcgattttg 247  Q
    |||||||| ||||||||||| |||||||||||||||| | |||||||| ||||| |||||||||||    
T  23142224 tttcttcaacttcaacgactgaaatccatagtagaatcctaaaataggcaaaattcatcgattttg 23142289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 24056688 - 24056618
Alignment:
Q  142 aaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatag 212  Q
    |||||| ||||| ||||||||||||| ||||||||  |||||| ||||| || ||||||||||||||||||    
T  24056688 aaaatcttgacttaaatcctaaaatccaggattttgcgactttattcacatttaacgactcaaatccatag 24056618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 235
Target Start/End: Complemental strand, 15761564 - 15761466
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaat 235  Q
    |||| ||||||  |||| |||||||||| || ||||||||  || ||| || |||||||||||||||||| ||||| | ||| | |||||||| |||||    
T  15761564 ttgtcaaaatctcgacttaaatcctaaactccaggattttgtgagtttatttaccttcaacgactcaaattcatagcaaaatcccaaaataggcaaaat 15761466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 247
Target Start/End: Complemental strand, 27836569 - 27836479
Alignment:
Q  157 atcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcgattttg 247  Q
    ||||||||||  ||||||||  |  ||| |||||||||||| ||| |||||||||||||||| | |||||| | ||||| |||| ||||||    
T  27836569 atcctaaaattcaggattttgcggttttattcaccttcaacaactgaaatccatagtagaattctaaaataagcaaaattcatcaattttg 27836479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 7489368 - 7489331
Alignment:
Q  181 ctttcttcaccttcaacgactcaaatccatagtagaat 218  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  7489368 ctttcttcaccttcaacgactaaaatccgtagtagaat 7489331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 18051655 - 18051545
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| ||||||||||||  ||||||||  ||||||||||| ||||||||||||||||| |||||||||| | |||||||| ||||||    
T  18051655 ttgtcaaaatcccgacttaaatcctaaaatataggattttgcgactttcttcaacttcaacgactcaaatctatagtagaattctaaaataggcaaaatc 18051556  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  18051555 catcgattttg 18051545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 43234872 - 43234982
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| |||||||  ||| ||||||||||||  ||||||||  ||||||||||||||||||||||| |||||||||||||||| | |||||||| ||||||    
T  43234872 ttgtcaaaatcccaacttaaatcctaaaattcaggattttgcgactttcttcaccttcaacgacttaaatccatagtagaatcctaaaataggaaaaatc 43234971  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  43234972 catcgattttg 43234982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 20923722 - 20923832
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| ||||||||||||| || |||||  ||||||||||||||||||||||  |||||||||||||||| | |||||||| ||| ||    
T  20923722 ttgtcaaaatcccgacttaaatcctaaaatccagaattttgcgactttcttcaccttcaacgacctaaatccatagtagaatcctaaaataggcaaagtc 20923821  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  20923822 catcgattttg 20923832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 247
Target Start/End: Original strand, 19578964 - 19579056
Alignment:
Q  155 aaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcgattttg 247  Q
    ||||| ||||||| ||||||||  || |||||||||||||||||||| |||||||||||||||| | |||||| | |||||||||||||||||    
T  19578964 aaatcataaaatccaggattttgcgattttcttcaccttcaacgacttaaatccatagtagaatcccaaaataagcaaaatccatcgattttg 19579056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 18843719 - 18843829
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||| | |||| |||||||| |||  ||||||||  |||||||||||||||||||||||||||||||| ||||||| | |||||||  |||||     
T  18843719 ttgttaaaattccgacttaaatcctataattcaggattttgcgactttcttcaccttcaacgactcaaatccattgtagaatcccaaaatagacaaaatt 18843818  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  18843819 catcgattttg 18843829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 21059280 - 21059171
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| || | ||||||||||||| ||||||||  |||||||||||| ||||||||||||||||||| ||||||| |  ||||||| |||||     
T  21059280 ttgtcaaaatcccgatttaaatcctaaaatctaggattttgcgactttcttcactttcaacgactcaaatccat-gtagaatccctaaataggcaaaatt 21059182  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  21059181 catcgattttg 21059171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 22645844 - 22645734
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| ||||||||||||| || |||||  ||||||||||||||||||||| | |||||||||||| ||| | |||||| ||||| ||    
T  22645844 ttgtcaaaatcccgacttaaatcctaaaatccagtattttgcgactttcttcaccttcaacgatttaaatccatagtaaaatcccaaaataagtaaattc 22645745  T
Q  237 catcgattttg 247  Q
    |||| ||||||    
T  22645744 catctattttg 22645734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 243
Target Start/End: Complemental strand, 23172557 - 23172451
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| ||||||||||||  ||||||||  ||||||||||| ||||||||||| |||||||||||||||| | |||||||  |||||     
T  23172557 ttgtcaaaatcccgacttaaatcctaaaatttaggattttgcgactttcttcatcttcaacgacttaaatccatagtagaatcccaaaatagacaaaatt 23172458  T
Q  237 catcgat 243  Q
    |||||||    
T  23172457 catcgat 23172451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 38158379 - 38158269
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||| | |||| ||||||||||||| ||||||||  ||||||||| || |||||| ||||||||||| |||||||| | |||||||  ||||||    
T  38158379 ttgtcaaaattccgacttaaatcctaaaatctaggattttgcgactttcttgactttcaacaactcaaatccagagtagaatcccaaaatagacaaaatc 38158280  T
Q  237 catcgattttg 247  Q
    ||| |||||||    
T  38158279 cattgattttg 38158269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 247
Target Start/End: Complemental strand, 27340306 - 27340201
Alignment:
Q  142 aaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcg 241  Q
    ||||||| |||| ||||| ||||||  | ||||||  ||||||||||| ||||||||||||||||| ||||||||||   |||||||| ||||| |||||    
T  27340306 aaaatcccgacttaaatcataaaatttatgattttgcgactttcttcatcttcaacgactcaaatctatagtagaatcttaaaataggcaaaattcatcg 27340207  T
Q  242 attttg 247  Q
    ||||||    
T  27340206 attttg 27340201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 19042514 - 19042444
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatc 207  Q
    |||| |||||||  ||| |||| |||||||  | ||||||  |||||||||||||||||||||||||||||    
T  19042514 ttgtcaaaatcccaacttaaattctaaaatttaagattttgtgactttcttcaccttcaacgactcaaatc 19042444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 20320992 - 20321050
Alignment:
Q  182 tttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatc 240  Q
    ||||||||||||||| |||| |||||||||||| ||| | ||||||| |||||| ||||    
T  20320992 tttcttcaccttcaatgactaaaatccatagtaaaattccaaaatagataaaattcatc 20321050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 19979648 - 19979713
Alignment:
Q  182 tttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcgattttg 247  Q
    |||||||| |||||||||||||||| ||| ||||||| | |||| | | ||||||||| |||||||    
T  19979648 tttcttcatcttcaacgactcaaattcatggtagaatcccaaaacacgcaaaatccatggattttg 19979713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 41688745 - 41688680
Alignment:
Q  182 tttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcgattttg 247  Q
    |||||||||||||||||||| ||||  |||||| ||| | |||||| | ||||| |||||||||||    
T  41688745 tttcttcaccttcaacgacttaaatttatagtaaaattctaaaataagcaaaattcatcgattttg 41688680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 5362088 - 5361978
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| ||||||||||||  ||||||||  ||||||||||| |||||||||||||||||||||||||||| | |||||||| |||| |    
T  5362088 ttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcatcttcaacgactcaaatccatagtagaattccaaaataggcaaaacc 5361989  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  5361988 catcgattttg 5361978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 8011341 - 8011231
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| |||||||  ||| ||||||||||||  ||||||||  |||||||||||||||||||||||||||||||||||||||| | |||||  | |||||     
T  8011341 ttgtcaaaatcccaactcaaatcctaaaattcaggattttgcgactttcttcaccttcaacgactcaaatccatagtagaatcccaaaatgagcaaaatt 8011242  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  8011241 catcgattttg 8011231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 247
Target Start/End: Original strand, 8889237 - 8889342
Alignment:
Q  142 aaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcg 241  Q
    ||||||| |||| ||||||||||||| ||||||||  || |||||||||| |||||||||||||| |||| |||||| | |||||||| ||||| |||||    
T  8889237 aaaatcccgacttaaatcctaaaatccaggattttgtgaatttcttcaccatcaacgactcaaattcataatagaatcccaaaataggcaaaattcatcg 8889336  T
Q  242 attttg 247  Q
    ||||||    
T  8889337 attttg 8889342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 9770116 - 9770226
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||  |||| |||| |||||||| ||||||||  |||||| ||||||||||||||||||||||||||||||||| | |||||||  ||||||    
T  9770116 ttgttaaaatctcgacttaaattctaaaatctaggattttgtgacttttttcaccttcaacgactcaaatccatagtagaatcctaaaatagacaaaatc 9770215  T
Q  237 catcgattttg 247  Q
     ||| ||||||    
T  9770216 tatcaattttg 9770226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 137 - 246
Target Start/End: Complemental strand, 23065088 - 23064979
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| |||| || |||| |||| |||||||| || |||||   ||||||||||| ||||||||||||||||||| ||||||| | ||||||||| |||||    
T  23065088 ttgttaaaaccccgacttaaattctaaaatccagtattttgtaactttcttcacattcaacgactcaaatccattgtagaattctaaaataggtcaaatc 23064989  T
Q  237 catcgatttt 246  Q
    ||||||||||    
T  23064988 catcgatttt 23064979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 13023571 - 13023684
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaa-tcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatac--aaaaataggtaaa 233  Q
    |||| |||||||  ||| ||||||||||| |  ||||||||  |||||||||||||||||| ||||||||||||||||||||| |  |||||||| ||||    
T  13023571 ttgtcaaaatcccaacttaaatcctaaaaatttaggattttgcgactttcttcaccttcaatgactcaaatccatagtagaatcccaaaaaatagataaa 13023670  T
Q  234 atccatcgattttg 247  Q
    ||| ||||||||||    
T  13023671 atcaatcgattttg 13023684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 246
Target Start/End: Complemental strand, 13551727 - 13551638
Alignment:
Q  157 atcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcgatttt 246  Q
    ||||||||||  ||||||||  |||||| |||||||||||||||||||||||||| ||||||   |||||||  ||||||||||||||||    
T  13551727 atcctaaaatttaggattttgcgacttttttcaccttcaacgactcaaatccatattagaatttcaaaatagacaaaatccatcgatttt 13551638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 7044731 - 7044831
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| ||||||||||||| | ||||||   ||||| ||||||||||||||||||||||||||| ||||| | |||||| | ||||||    
T  7044731 ttgtcaaaatcccgacttaaatcctaaaatccatgattttgcaactttattcaccttcaacgactcaaatccatagcagaatcccaaaataagcaaaatc 7044830  T
Q  237 c 237  Q
    |    
T  7044831 c 7044831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 18459833 - 18459733
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| ||||||||||||| | ||||||  |||| | ||||| ||||||||||||||||||||| ||||| | |||||||| ||||||    
T  18459833 ttgtaaaaatcccgactaaaatcctaaaatccaagattttgcgactgtattcactttcaacgactcaaatccatagcagaatcctaaaataggcaaaatc 18459734  T
Q  237 c 237  Q
    |    
T  18459733 c 18459733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 10142903 - 10143013
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||||||||||| |||| |||| |||||||  |  |||||  |||||||| ||||||||| ||||||| ||||||||| ||| | |||||||  ||||||    
T  10142903 ttgtgaaaatcccgacttaaattctaaaatttaatattttgcgactttctccaccttcaatgactcaagtccatagtataattccaaaatagacaaaatc 10143002  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  10143003 catcgattttg 10143013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 247
Target Start/End: Complemental strand, 9911518 - 9911426
Alignment:
Q  155 aaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcgattttg 247  Q
    ||||||||||||  | ||||||   ||||||||||||||||||| |  |||||||||||||||| | ||||| || |||||||||||||||||    
T  9911518 aaatcctaaaattcaagattttgcaactttcttcaccttcaacggcctaaatccatagtagaatcctaaaattggcaaaatccatcgattttg 9911426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 7815556 - 7815661
Alignment:
Q  132 gacttttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggta 231  Q
    |||| |||| ||||||| |||| ||||||||||||  || |||||  |||||| |||| ||| | ||||||||| |||||||||||| | |||||||| |    
T  7815556 gactattgttaaaatcccgacttaaatcctaaaatacagcattttgtgactttattcagcttaagcgactcaaacccatagtagaatcccaaaataggca 7815655  T
Q  232 aaatcc 237  Q
    ||||||    
T  7815656 aaatcc 7815661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 247
Target Start/End: Original strand, 37240304 - 37240371
Alignment:
Q  179 gactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcgattttg 247  Q
    |||||| ||||||||||||||||||||||||||||||||  | |||||||| | ||| |||||||||||    
T  37240304 gacttttttcaccttcaacgactcaaatccatagtagaa-cccaaaataggcataattcatcgattttg 37240371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 4156767 - 4156866
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| ||||| ||||||  ||||||||  |||||| |||||||| |||||||||||||  ||||||||| | |||||| | ||||||    
T  4156767 ttgtcaaaatcccgacttaaatcttaaaatttaggattttatgactttattcacctttaacgactcaaatctgtagtagaatcctaaaataagcaaaatc 4156866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 6347171 - 6347088
Alignment:
Q  155 aaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatcca 238  Q
    ||||||||||||| ||||||||   ||||| || ||||||||||||||||||||||||  || |   |||||||||||||||||    
T  6347171 aaatcctaaaatccaggattttgcaactttatttaccttcaacgactcaaatccatagccgagtctcaaaataggtaaaatcca 6347088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 155 - 245
Target Start/End: Original strand, 17466101 - 17466191
Alignment:
Q  155 aaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcgattt 245  Q
    ||||| ||||||  ||||||||  || |||||||| ||| || |||||||||||||| |||||| | |||||| | |||||||||||||||    
T  17466101 aaatcttaaaatttaggattttgcgattttcttcatctttaaggactcaaatccataatagaatcctaaaataagcaaaatccatcgattt 17466191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 24719563 - 24719621
Alignment:
Q  179 gactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatcc 237  Q
    |||||| ||||||||||||||||||||||||||| ||||| | ||||| ||| ||||||    
T  24719563 gactttattcaccttcaacgactcaaatccatagcagaatcctaaaatgggtgaaatcc 24719621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 36120860 - 36120938
Alignment:
Q  169 aggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcgattttg 247  Q
    ||||||||  || |||||||||||||||||||| ||||||||| || ||| | |||||| | ||||| |||||||||||    
T  36120860 aggattttgcgattttcttcaccttcaacgacttaaatccataataaaattctaaaataagcaaaattcatcgattttg 36120938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 213
Target Start/End: Original strand, 7452424 - 7452499
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagt 213  Q
    |||||||||||| |||| |||| |||||||| || |||||   ||||| ||||||||||||||||| ||||||||||    
T  7452424 ttgtgaaaatcccgacttaaattctaaaatccagaattttgcaactttattcaccttcaacgactc-aatccatagt 7452499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 247
Target Start/End: Original strand, 5375710 - 5375778
Alignment:
Q  179 gactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcgattttg 247  Q
    ||||||||||||||||||||||| |||| |||| ||||||   |||||||  ||||| |||||| ||||    
T  5375710 gactttcttcaccttcaacgactaaaattcataatagaattttaaaatagacaaaattcatcgactttg 5375778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 29067288 - 29067398
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| |||| |||||||  ||||||||  |||||||||||||||||||||||||||||||||||||||| | |||||||  ||||||    
T  29067288 ttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttcaccttcaacgactcaaatccatagtagaatcccaaaatagacaaaatc 29067387  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  29067388 catcgattttg 29067398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 24649814 - 24649724
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaata 227  Q
    |||| ||||||| |||| ||||| ||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  24649814 ttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaattccaaaata 24649724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 247
Target Start/End: Original strand, 21963438 - 21963543
Alignment:
Q  142 aaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcg 241  Q
    ||||||| |||| ||||||||||||  | ||||||  ||||||||||||||| |||||||||||||||||||| ||| | |||||| | |||||||||||    
T  21963438 aaaatcccgacttaaatcctaaaattcaagattttacgactttcttcaccttgaacgactcaaatccatagtaaaatcctaaaatatgcaaaatccatcg 21963537  T
Q  242 attttg 247  Q
    ||||||    
T  21963538 attttg 21963543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 247
Target Start/End: Original strand, 21985874 - 21985979
Alignment:
Q  142 aaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcg 241  Q
    ||||||| |||| ||||||||||||  | ||||||  ||||||||||||||| |||||||||||||||||||| ||| | |||||| | |||||||||||    
T  21985874 aaaatcccgacttaaatcctaaaattcaagattttacgactttcttcaccttgaacgactcaaatccatagtaaaatcctaaaatatgcaaaatccatcg 21985973  T
Q  242 attttg 247  Q
    ||||||    
T  21985974 attttg 21985979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 247
Target Start/End: Complemental strand, 30727811 - 30727706
Alignment:
Q  142 aaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcg 241  Q
    |||||||||||| ||||| |||||||  | |||||  ||||||||||||||||||||||||||||| |||||||||| | |||||||  ||||| |||||    
T  30727811 aaaatcctgacttaaatcttaaaatcctgaattttacgactttcttcaccttcaacgactcaaatctatagtagaatcccaaaatagacaaaattcatcg 30727712  T
Q  242 attttg 247  Q
    ||||||    
T  30727711 attttg 30727706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 28745774 - 28745884
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| || | ||||||||||||  ||||||||  |||||||||||||||||||||||||||| |||||||||||   |||||||  |||||     
T  28745774 ttgtcaaaatcccgatttaaatcctaaaatttaggattttgcgactttcttcaccttcaacgactcaaattcatagtagaatctcaaaatagacaaaatt 28745873  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  28745874 catcgattttg 28745884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 142 - 246
Target Start/End: Original strand, 22137287 - 22137391
Alignment:
Q  142 aaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcg 241  Q
    |||||||||||| ||||||||||||  | ||| ||  ||||||||||||||| |||| ||||||||||||||| ||| | |||||| | |||||||||||    
T  22137287 aaaatcctgacttaaatcctaaaattcaagatgttacgactttcttcaccttgaacgcctcaaatccatagtaaaatcccaaaatatgcaaaatccatcg 22137386  T
Q  242 atttt 246  Q
    |||||    
T  22137387 atttt 22137391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 27676360 - 27676460
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| |||||||||||| ||||| ||||||  ||||||||  |||||| ||||||||| | ||||||||||||||| ||||| | |||||||||||||||    
T  27676360 ttgtcaaaatcctgacttaaatcgtaaaatgcaggattttgcgactttattcaccttctatgactcaaatccatagcagaatcccaaaataggtaaaatc 27676459  T
Q  237 c 237  Q
    |    
T  27676460 c 27676460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 20756043 - 20756153
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| ||||  ||||||  ||||||||  || ||||||||||||||| |||||||||||||||||||||   |||||||| ||||||    
T  20756043 ttgtcaaaatcccgacttaaattataaaattcaggattttgcgattttcttcaccttcaatgactcaaatccatagtagaatcttaaaataggcaaaatc 20756142  T
Q  237 catcgattttg 247  Q
     ||||||||||    
T  20756143 aatcgattttg 20756153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 246
Target Start/End: Complemental strand, 3449416 - 3449308
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| ||||||||||||  ||||||||  ||||||||| |||||||||| || ||||| |||||||||| | |||||||| ||||||    
T  3449416 ttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttctttaccttcaacg-ctaaaatctatagtagaatcctaaaataggcaaaatc 3449318  T
Q  237 catcgatttt 246  Q
    ||| ||||||    
T  3449317 catagatttt 3449308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 237
Target Start/End: Complemental strand, 10873065 - 10872971
Alignment:
Q  143 aaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatcc 237  Q
    |||||| || ||||||||||||||| ||||||||  ||  || ||||||||||||||||||||||||||| |||||   |||||||| |||||||    
T  10873065 aaatcccgattgaaatcctaaaatccaggattttgtgatattattcaccttcaacgactcaaatccatagcagaatctcaaaataggcaaaatcc 10872971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 24620283 - 24620216
Alignment:
Q  179 gactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcgatttt 246  Q
    |||||||||||||||||||||||||||| || ||||||||   |||||||| ||||| ||||||||||    
T  24620283 gactttcttcaccttcaacgactcaaattcacagtagaatctcaaaataggcaaaattcatcgatttt 24620216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 39427949 - 39428016
Alignment:
Q  180 actttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcgattttg 247  Q
    ||||||||||| |||||||||||||||| |||||||||| | |||||||  ||| |||||||||||||    
T  39427949 actttcttcacgttcaacgactcaaatcgatagtagaatcccaaaatagacaaagtccatcgattttg 39428016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 15806630 - 15806531
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| |||||||| |||| || |||||  |||||| ||||||||||| ||||||||||||||| ||||| | |||| ||| ||||||    
T  15806630 ttgtcaaaatcc-gacttaaatcctacaatccagaattttgcgactttattcaccttcaatgactcaaatccatagcagaatcccaaaacaggcaaaatc 15806532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 246
Target Start/End: Original strand, 17064330 - 17064434
Alignment:
Q  142 aaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcg 241  Q
    ||||||| |||| ||||| ||||||  ||||||||  || | | ||||||||||||||||| ||| ||||||||||| | |||||||  ||||| |||||    
T  17064330 aaaatcccgacttaaatcttaaaattcaggattttgcgattgtgttcaccttcaacgactccaattcatagtagaattctaaaatagacaaaattcatcg 17064429  T
Q  242 atttt 246  Q
    |||||    
T  17064430 atttt 17064434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 247
Target Start/End: Complemental strand, 22494888 - 22494796
Alignment:
Q  155 aaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcgattttg 247  Q
    |||||||||||||   ||||||  |||||| |||||||||||||||| |||| ||||||||||| | ||||||   ||||| |||||||||||    
T  22494888 aaatcctaaaatctgagattttgcgacttttttcaccttcaacgactaaaattcatagtagaatcctaaaataaacaaaattcatcgattttg 22494796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 228
Target Start/End: Original strand, 17796508 - 17796581
Alignment:
Q  155 aaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaatag 228  Q
    ||||| ||||||| ||||||||| |||||| |||||||||||| ||| |||| ||||| ||||| | |||||||    
T  17796508 aaatcataaaatctaggatttttcgactttattcaccttcaacaacttaaattcatagcagaatcctaaaatag 17796581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 228
Target Start/End: Original strand, 19104948 - 19105021
Alignment:
Q  155 aaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaatag 228  Q
    ||||| ||||||| ||||||||| |||||| |||||||||||| ||| |||| ||||| ||||| | |||||||    
T  19104948 aaatcataaaatctaggatttttcgactttattcaccttcaacaacttaaattcatagcagaatcctaaaatag 19105021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 8156256 - 8156145
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaat-acaaaaataggtaaaat 235  Q
    |||| |||||||  ||| |||| |||||||  || |||||  || ||| ||||||||||| ||||||||||||||||| |||  ||||| |||  |||||    
T  8156256 ttgtcaaaatcccaacttaaattctaaaattcagaattttacgatttttttcaccttcaatgactcaaatccatagtataatcccaaaattagacaaaat 8156157  T
Q  236 ccatcgattttg 247  Q
    ||||||||||||    
T  8156156 ccatcgattttg 8156145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 245
Target Start/End: Complemental strand, 25870501 - 25870389
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttc----aacgactcaaatccatagtagaatacaaaaataggtaa 232  Q
    |||| ||||||  |||| ||||||||||||| | ||||||  ||||||||||| ||||    |||||||||||| | ||||||||    |||||||| ||    
T  25870501 ttgtcaaaatctcgacttaaatcctaaaatccaagattttgtgactttcttcatcttcaacgaacgactcaaattcgtagtagaacctcaaaataggcaa 25870402  T
Q  233 aatccatcgattt 245  Q
    |||||||||||||    
T  25870401 aatccatcgattt 25870389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 228
Target Start/End: Original strand, 17796290 - 17796363
Alignment:
Q  155 aaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaatag 228  Q
    ||||| ||||||| ||||||||  |||||| |||||||||||| ||| |||| ||||| ||||| | |||||||    
T  17796290 aaatcataaaatctaggattttgtgactttattcaccttcaacaactaaaattcatagcagaatcctaaaatag 17796363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 228
Target Start/End: Original strand, 19104730 - 19104803
Alignment:
Q  155 aaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaatag 228  Q
    ||||| ||||||| ||||||||  |||||| |||||||||||| ||| |||| ||||| ||||| | |||||||    
T  19104730 aaatcataaaatctaggattttgtgactttattcaccttcaacaactaaaattcatagcagaatcctaaaatag 19104803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 30432423 - 30432533
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| |||||||||| | |||| |||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||   |||||||  ||||||    
T  30432423 ttgtcaaaatcctgatttaaattctaaaatctaggatttttcgactttcttcgccttcaacgactcaaatccatagtagaatctcaaaatagacaaaatc 30432522  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  30432523 catcgattttg 30432533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 31238102 - 31237992
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| ||||||||||||| ||||||||   ||||||||||||||||||||||||||| |||||||||||   |||||||| ||||||    
T  31238102 ttgtcaaaatcccgacttaaatcctaaaatctaggattttgccactttcttcaccttcaacgactcaaattcatagtagaatcttaaaataggaaaaatc 31238003  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  31238002 catcgattttg 31237992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 23863446 - 23863336
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| |||| ||||||||||| |||||  |||||||||||| |||||||||| ||||||||||||||||   |||||||| ||||||    
T  23863446 ttgtcaaaatcccgacttaaattctaaaatcgagaattttgcgactttcttcactttcaacgactgaaatccatagtagaatctcaaaataggcaaaatc 23863347  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  23863346 catcgattttg 23863336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 1404787 - 1404897
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| |||| |||||||  ||||||||  ||||||||||||||||||||||| |||||||| ||||||| | ||| || | ||||||    
T  1404787 ttgtcaaaatcccgacttaaattctaaaatttaggattttgtgactttcttcaccttcaacgacttaaatccattgtagaatcctaaactatgcaaaatc 1404886  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  1404887 catcgattttg 1404897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 19491885 - 19491970
Alignment:
Q  161 taaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcgattttg 247  Q
    ||||||| ||||||||  ||||||||||| ||| |||||||||||||||||| ||||| | ||||||||||||||||||||||||||    
T  19491885 taaaatctaggattttgcgactttcttcatcttaaacgactcaaatccatagcagaat-ccaaaataggtaaaatccatcgattttg 19491970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 36429852 - 36429962
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| |||||||  ||| |||||||| |||| ||||||||  |||||||||||||||||||||||||| | ||||| |||||   |||||||| ||||||    
T  36429852 ttgtcaaaatcccaacttaaatcctataatctaggattttgcgactttcttcaccttcaacgactcaagttcataggagaatctcaaaataggcaaaatc 36429951  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  36429952 catcgattttg 36429962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 35566047 - 35565969
Alignment:
Q  169 aggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcgattttg 247  Q
    ||||||||  |||||||||||  ||||| ||||||||||||| ||||||| | |||||||| |||||||||||||||||    
T  35566047 aggattttgcgactttcttcatattcaatgactcaaatccatggtagaatcccaaaataggcaaaatccatcgattttg 35565969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 25539306 - 25539241
Alignment:
Q  182 tttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcgattttg 247  Q
    |||||||||||||||||||| |||||||||| ||||| | |||||| | |||||||||||||||||    
T  25539306 tttcttcaccttcaacgacttaaatccataggagaatccgaaaataagcaaaatccatcgattttg 25539241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 239
Target Start/End: Complemental strand, 1690874 - 1690785
Alignment:
Q  150 gactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccat 239  Q
    |||| ||||| ||||||  ||||||||  |||||||||||||||| |||||||| |||||||||| ||| | |||||||| |||| ||||    
T  1690874 gacttaaatcttaaaatttaggattttgtgactttcttcaccttcgacgactcagatccatagtaaaatcccaaaataggcaaaacccat 1690785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 246
Target Start/End: Original strand, 20063718 - 20063827
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| ||| ||||||||| | | ||||  |  |||||||| |||||| |||| |||||||||||||||| | |||||||| |||||     
T  20063718 ttgtcaaaatcccgacttaaaacctaaaatccaaggttttgcggttttcttcatcttcaaggacttaaatccatagtagaatcccaaaataggcaaaatt 20063817  T
Q  237 catcgatttt 246  Q
    ||||||||||    
T  20063818 catcgatttt 20063827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 31023259 - 31023325
Alignment:
Q  169 aggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaat 235  Q
    ||||||||  |||||| ||||| ||||||||||||||| ||||||||||| | |||||||| |||||    
T  31023259 aggattttgcgactttattcactttcaacgactcaaattcatagtagaatcctaaaataggcaaaat 31023325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 34841602 - 34841648
Alignment:
Q  179 gactttcttcaccttcaacgactcaaatccatagtagaatacaaaaa 225  Q
    |||||| ||||||||||||||||||||||||||| ||||||| ||||    
T  34841602 gactttattcaccttcaacgactcaaatccataggagaataccaaaa 34841648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 15588956 - 15588894
Alignment:
Q  156 aatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaat 218  Q
    |||| ||||||  ||||||||  | ||||||||||||||||| |||||||| |||||||||||    
T  15588956 aatcttaaaattcaggattttgcgtctttcttcaccttcaacaactcaaatacatagtagaat 15588894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 16766726 - 16766804
Alignment:
Q  149 tgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaata 227  Q
    ||||| ||||| ||||||  ||||||||  || ||| |||||||||||||| |||||||||||| ||||| | ||||||    
T  16766726 tgacttaaatcttaaaatttaggattttacgattttattcaccttcaacgaatcaaatccatagcagaatcctaaaata 16766804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 31578009 - 31578118
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| ||||  ||||||  | ||||||  || |||||||||||||||||| | |||||| ||||||||| | |||||| | ||||||    
T  31578009 ttgtcaaaatcccgacttaaatgttaaaatttaagattttgcgattttcttcaccttcaacgatttaaatcc-tagtagaatcctaaaataagcaaaatc 31578107  T
Q  237 catcgattttg 247  Q
    |||| ||||||    
T  31578108 catcaattttg 31578118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 13100195 - 13100305
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| |||||||  ||| |||| |||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||| | |||||||| |||| |    
T  13100195 ttgtcaaaatcccaacttaaattctaaaatcgaggattttacgactttcttcacgttcaacgactcaaatccatagtagaatcctaaaataggcaaaaac 13100294  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  13100295 catcgattttg 13100305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 21846393 - 21846283
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| || | ||||||||||||| ||||||||  |||||| |||||||||||||||||||||||||||||||||   |||||||  ||||||    
T  21846393 ttgtcaaaatcccgagttaaatcctaaaatccaggattttgcgacttttttcaccttcaacgactcaaatccatagtagaatctcaaaatagaaaaaatc 21846294  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  21846293 catcgattttg 21846283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 9327340 - 9327230
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| |||||||||||| ||||||||||||  ||| ||||  |||||||| |||||||||||||||||||| |||||| ||| | |||||||  ||||||    
T  9327340 ttgttaaaatcctgacttaaatcctaaaatttagggttttgcgactttctacaccttcaacgactcaaatctatagtaaaatcccaaaatagacaaaatc 9327241  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  9327240 catcgattttg 9327230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 13276391 - 13276281
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| || | ||||||||||||| ||||||||  ||||||||||| ||||||||||  |||||||||||||||| | |||||||| ||||||    
T  13276391 ttgtcaaaatcccgatttaaatcctaaaatctaggattttgcgactttcttcatcttcaacgacctaaatccatagtagaatcctaaaataggcaaaatc 13276292  T
Q  237 catcgattttg 247  Q
     ||||||||||    
T  13276291 aatcgattttg 13276281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 23528660 - 23528770
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| |||||||  ||| ||||| ||||||  ||||||||  ||||||||||| |||||||||||||||||||||||||||| | |||||||| ||||||    
T  23528660 ttgtcaaaatcccaacttaaatcttaaaattcaggattttgcgactttcttcatcttcaacgactcaaatccatagtagaatcctaaaataggcaaaatc 23528759  T
Q  237 catcgattttg 247  Q
     ||||||||||    
T  23528760 tatcgattttg 23528770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 247
Target Start/End: Complemental strand, 17056119 - 17056014
Alignment:
Q  142 aaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcg 241  Q
    |||||||||| | ||||||||||||| ||||||||   | ||||| |||||||||||||||| ||||||||||||||   |||||| |||||||||||||    
T  17056119 aaaatcctgatttaaatcctaaaatccaggattttgcaattttctccaccttcaacgactcagatccatagtagaattttaaaataagtaaaatccatcg 17056020  T
Q  242 attttg 247  Q
    ||||||    
T  17056019 attttg 17056014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 169 - 246
Target Start/End: Complemental strand, 41032763 - 41032686
Alignment:
Q  169 aggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcgatttt 246  Q
    ||||||||  || ||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||    
T  41032763 aggattttgcgattttcttcaccttcaacgactcaaatccatagtagaattctaaaataggcaaaatccatcgatttt 41032686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 137 - 228
Target Start/End: Complemental strand, 25146893 - 25146802
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaatag 228  Q
    |||| |||||||||||| ||||||||||||  || |||||  |||||||||||||||||||||||||||| ||||||||||| | |||||||    
T  25146893 ttgtcaaaatcctgacttaaatcctaaaattcagaattttgcgactttcttcaccttcaacgactcaaattcatagtagaatcccaaaatag 25146802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 9955160 - 9955050
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| |||||||  ||| ||||||||||||  ||||||||  ||||||||||||||||||||||| |||||||  ||||||| | |||||| | ||||||    
T  9955160 ttgtcaaaatcccaacttaaatcctaaaatttaggattttgcgactttcttcaccttcaacgacttaaatccaatgtagaatcccaaaataagcaaaatc 9955061  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  9955060 catcgattttg 9955050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 12513285 - 12513395
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| |||||||| |||| ||||||||  ||||||||||| |||||||||||||||||||||||| |||   ||||||   ||||||    
T  12513285 ttgtcaaaatcccgacttaaatcctacaatctaggattttgcgactttcttcagcttcaacgactcaaatccatagtaaaatcataaaataatcaaaatc 12513384  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  12513385 catcgattttg 12513395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 19010071 - 19009961
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| ||||||||||||  ||||||||  |||||| ||||||||||| |||| |||||||||||| ||| | |||||| | ||||||    
T  19010071 ttgtcaaaatccggacttaaatcctaaaattcaggattttgcgacttttttcaccttcaatgacttaaatccatagtaaaattctaaaataagcaaaatc 19009972  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  19009971 catcgattttg 19009961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 9352188 - 9352078
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| ||||||||||||| ||| ||||  |||||||||||||||||| |||||||||| |||| ||| | | |||||||  ||||||    
T  9352188 ttgtcaaaatcccgacttaaatcctaaaatccagggttttgcgactttcttcaccttcaaagactcaaatctatagcagagtcccaaaatagacaaaatc 9352089  T
Q  237 catcgattttg 247  Q
    | |||||||||    
T  9352088 cgtcgattttg 9352078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 42180190 - 42180080
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| |||||||  ||| |||| |||||||  ||||||||  |||||||||| |||||||||| ||||||||||||||||||   |||||||| |||||     
T  42180190 ttgtcaaaatcccaacttaaattctaaaattcaggattttgcgactttcttccccttcaacgagtcaaatccatagtagaatttcaaaataggcaaaata 42180091  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  42180090 catcgattttg 42180080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 18304936 - 18304825
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttc-aacgactcaaatccatagtagaatacaaaaataggtaaaat 235  Q
    |||| |||||||  ||| ||||||||||||| || |||||  |||||||||||||||| |||||||||||| |||||||||||   |||||||  |||||    
T  18304936 ttgtcaaaatcccaacttaaatcctaaaatccagtattttgcgactttcttcaccttcaaacgactcaaattcatagtagaatctcaaaatagacaaaat 18304837  T
Q  236 ccatcgattttg 247  Q
    ||||| ||||||    
T  18304836 ccatcaattttg 18304825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 208
Target Start/End: Original strand, 30619079 - 30619150
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatcc 208  Q
    |||| ||||||| |||| ||||||||||||| ||||||||  || |||||||||||||||||||||||||||    
T  30619079 ttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgattttcttcaccttcaacgactcaaatcc 30619150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 247
Target Start/End: Complemental strand, 16125578 - 16125470
Alignment:
Q  142 aaaatcctgactgaaatcctaaaatcgaggatttttggactttctt---caccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatcca 238  Q
    |||||||||||| ||||||||||||  ||||||||  |||||||||   |||||||||||||  |||||||||||| |||   |||||||| ||||||||    
T  16125578 aaaatcctgacttaaatcctaaaattcaggattttgcgactttctttttcaccttcaacgacctaaatccatagtaaaatcttaaaataggcaaaatcca 16125479  T
Q  239 tcgattttg 247  Q
    | |||||||    
T  16125478 ttgattttg 16125470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 214
Target Start/End: Complemental strand, 12800706 - 12800629
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagta 214  Q
    ||||||||||||  ||| ||||||||||||  ||||||||  |||||||||||| |||||||||||||||| ||||||    
T  12800706 ttgtgaaaatcccaacttaaatcctaaaatttaggattttacgactttcttcacattcaacgactcaaatctatagta 12800629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 235
Target Start/End: Complemental strand, 14074495 - 14074397
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaat 235  Q
    |||| ||||||| | || ||||||||||||  ||||||||  |||||||||||  |||||||||||||||||| ||||||||   ||||||| ||||||    
T  14074495 ttgtcaaaatcccgtcttaaatcctaaaatgtaggattttgcgactttcttcatgttcaacgactcaaatccagagtagaatcttaaaatagctaaaat 14074397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 237
Target Start/End: Complemental strand, 18337625 - 18337547
Alignment:
Q  159 cctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatcc 237  Q
    ||||||||| ||||||||   ||||| ||||||||||||||||||||||||||| ||||  | |||||||| |||||||    
T  18337625 cctaaaatccaggattttgcaactttattcaccttcaacgactcaaatccatagcagaaccccaaaataggcaaaatcc 18337547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 17869870 - 17869765
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| |||||||||||| ||||| |||     ||||||||  |||||||||||||||| |||||  ||||||| |||||||| | |||||||| |||||     
T  17869870 ttgtcaaaatcctgacttaaatcttaa-----aggattttgcgactttcttcaccttcgacgacctaaatccacagtagaatcctaaaataggcaaaatt 17869776  T
Q  237 catcgattttg 247  Q
    | |||||||||    
T  17869775 cttcgattttg 17869765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 9128965 - 9128855
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||  |||| |||||||||||   ||||| ||  |||||||||||| || ||||||||||||  ||||||||||   |||||||  |||||     
T  9128965 ttgttaaaatcacgacttaaatcctaaaaattaggatcttgcgactttcttcacatttaacgactcaaatttatagtagaatcttaaaatagacaaaatt 9128866  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  9128865 catcgattttg 9128855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 27233389 - 27233292
Alignment:
Q  150 gactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcgattttg 247  Q
    |||| ||||||||||||| ||||||||  ||||||||||||||||||||||| |||||||||||||||| | |||||||  |||||||||||||||||    
T  27233389 gacttaaatcctaaaatccaggattttgtgactttcttcaccttcaacgacttaaatccatagtagaatcccaaaatagacaaaatccatcgattttg 27233292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 6943585 - 6943475
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| ||||||||||||  ||||||||  ||||||||||||||||||||||||||||| ||||||||||   |||||||  |||||     
T  6943585 ttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcaccttcaacgactcaaatcgatagtagaatctcaaaatagacaaaatt 6943486  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  6943485 catcgattttg 6943475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 17250061 - 17250171
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| ||||||||||||| ||||||||   |||||||||||||||||||||| ||||||||| |||||| | |||||||| |||||     
T  17250061 ttgttaaaatcccgacttaaatcctaaaatccaggattttgcaactttcttcaccttcaacgacttaaatccatactagaatcccaaaataggcaaaatt 17250160  T
Q  237 catcgattttg 247  Q
    ||| |||||||    
T  17250161 cattgattttg 17250171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 247
Target Start/End: Original strand, 23897823 - 23897925
Alignment:
Q  145 atcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcgatt 244  Q
    |||| |||| ||||||||||||  ||||||||  |||||||||||| ||||||||||||||||||||||| ||| | ||||||||  |||||||||||||    
T  23897823 atcccgacttaaatcctaaaatgcaggattttgcgactttcttcacgttcaacgactcaaatccatagtaaaattctaaaataggcgaaatccatcgatt 23897922  T
Q  245 ttg 247  Q
    |||    
T  23897923 ttg 23897925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 30912537 - 30912427
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| |||||||  ||| ||||||||||||  ||||||||  ||||||||||||||||||||||||||||||||| ||||||   |||||||| ||||||    
T  30912537 ttgtcaaaatcccaacttaaatcctaaaatttaggattttgcgactttcttcaccttcaacgactcaaatccataatagaatcacaaaataggcaaaatc 30912438  T
Q  237 catcgattttg 247  Q
    ||| |||||||    
T  30912437 catagattttg 30912427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 26053421 - 26053311
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| ||||| ||||||| ||||||||  |||||||||||||||||| ||||||||| |||| |||||| | |||||| | ||||||    
T  26053421 ttgtcaaaatcccgacttaaatcttaaaatctaggattttgcgactttcttcaccttcaatgactcaaattcataatagaatcccaaaataagcaaaatc 26053322  T
Q  237 catcgattttg 247  Q
    |||| ||||||    
T  26053321 catcaattttg 26053311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 26073474 - 26073364
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| ||||| ||||||| ||||||||  |||||||||||||||||| ||||||||| |||| |||||| | |||||| | ||||||    
T  26073474 ttgtcaaaatcccgacttaaatcttaaaatctaggattttgcgactttcttcaccttcaatgactcaaattcataatagaatcccaaaataagcaaaatc 26073375  T
Q  237 catcgattttg 247  Q
    |||| ||||||    
T  26073374 catcaattttg 26073364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 245
Target Start/End: Complemental strand, 15528235 - 15528127
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| ||||||||||||  ||||||||  ||||||||||||||| ||||||| |||| |||||||||||   |||||||  ||||||    
T  15528235 ttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcacctttaacgacttaaattcatagtagaatcttaaaatagacaaaatc 15528136  T
Q  237 catcgattt 245  Q
    |||||||||    
T  15528135 catcgattt 15528127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 7918506 - 7918396
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| |||| |||||||  ||||||||  |||||| |||||||||||||||| |||||||||||| ||| | || ||| | ||||||    
T  7918506 ttgtcaaaatcccgacttaaattctaaaattcaggattttgcgacttttttcaccttcaacgacttaaatccatagtaaaatcctaacataagcaaaatc 7918407  T
Q  237 catcgattttg 247  Q
     ||||||||||    
T  7918406 aatcgattttg 7918396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 10509148 - 10509038
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| ||||||||||||  || | |||  |||||||||||| ||||| |||||||||  |||||||||| | |||||||| |||||     
T  10509148 ttgtcaaaatccagacttaaatcctaaaattcagaaatttgtgactttcttcacattcaatgactcaaatttatagtagaatcccaaaataggcaaaatt 10509049  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  10509048 catcgattttg 10509038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 17543865 - 17543755
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||  |||| ||||||||||||  ||||||||  |||||| ||||| |||||||||||||||||||||||||||   |||||| | ||||||    
T  17543865 ttgtcaaaatctcgacttaaatcctaaaattcaggattttgcgacttttttcactttcaacgactcaaatccatagtagaatcttaaaataagcaaaatc 17543766  T
Q  237 catcgattttg 247  Q
     || |||||||    
T  17543765 tatggattttg 17543755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 247
Target Start/End: Original strand, 19748342 - 19748447
Alignment:
Q  142 aaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcg 241  Q
    ||||||| |||| ||||| || |||| ||||||||  || |||||||||||| || ||||||||||| |||||||||   |||||||| ||||| |||||    
T  19748342 aaaatcccgacttaaatcttacaatccaggattttgagattttcttcacctttaatgactcaaatccgtagtagaatcttaaaataggcaaaattcatcg 19748441  T
Q  242 attttg 247  Q
    ||||||    
T  19748442 attttg 19748447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 246
Target Start/End: Complemental strand, 22499005 - 22498901
Alignment:
Q  142 aaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcg 241  Q
    |||||||  ||| |||||||||| || |  |||||  ||||||||||||||| |||||||||||||||||||| |||   |||||||  |||||||||||    
T  22499005 aaaatcccaactaaaatcctaaattccacaattttgcgactttcttcaccttgaacgactcaaatccatagtacaatctcaaaatagacaaaatccatcg 22498906  T
Q  242 atttt 246  Q
    |||||    
T  22498905 atttt 22498901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 246
Target Start/End: Complemental strand, 11327696 - 11327587
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| ||| ||||||||| | | ||||  |  |||||||| |||||| |||| |||||||||||||||| | |||||||| |||||     
T  11327696 ttgtcaaaatcccgacttaaaacctaaaatccaaggttttgcggttttcttcatcttcaaggacttaaatccatagtagaatcccaaaataggcaaaatt 11327597  T
Q  237 catcgatttt 246  Q
    ||||||||||    
T  11327596 catcgatttt 11327587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 246
Target Start/End: Original strand, 21354784 - 21354853
Alignment:
Q  177 tggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcgatttt 246  Q
    ||||||||||| ||||||||||||| |||||||| ||||||| | |||||||  ||||||||||| ||||    
T  21354784 tggactttctttaccttcaacgacttaaatccatggtagaatcccaaaatagacaaaatccatcgttttt 21354853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 7223523 - 7223626
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| ||||||||||||  ||||||||  ||||||||||||||       || |||||||||||||||| | |||||| | ||||||    
T  7223523 ttgtcaaaatcccgacttaaatcctaaaatttaggattttgcgactttcttcacct-------cttaaatccatagtagaattccaaaataagcaaaatc 7223615  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  7223616 catcgattttg 7223626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 18491157 - 18491081
Alignment:
Q  142 aaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaat 218  Q
    ||||||| |||| ||||||||||||| || |||||    |||| ||||||||||||||||||||||||||| |||||    
T  18491157 aaaatcccgacttaaatcctaaaatccagaattttgcatctttattcaccttcaacgactcaaatccatagcagaat 18491081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 17103254 - 17103309
Alignment:
Q  192 ttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcgattttg 247  Q
    ||||||||||||||| ||||||||||| | |||||||  |||||||||||||||||    
T  17103254 ttcaacgactcaaatgcatagtagaatcccaaaatagacaaaatccatcgattttg 17103309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 3574044 - 3573984
Alignment:
Q  150 gactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccat 210  Q
    |||| |||| |||||||| || ||||   ||||||||||||||||||||||||||||||||    
T  3574044 gacttaaattctaaaatccagaatttcgcgactttcttcaccttcaacgactcaaatccat 3573984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 2912372 - 2912263
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| ||||| ||||||  ||||||||   ||||||| || ||||||||| ||||||| ||||||||||   |||||| | |||||     
T  2912372 ttgtcaaaatcccgacttaaatcttaaaatttaggattttgcaactttctccatcttcaacgattcaaatc-atagtagaatcttaaaataagcaaaatt 2912274  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  2912273 catcgattttg 2912263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 4842011 - 4841946
Alignment:
Q  170 ggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaat 235  Q
    |||||||  |||||| ||||||||||||||||||||||| ||| ||||| | | |||||| |||||    
T  4842011 ggattttgcgactttattcaccttcaacgactcaaatccgtagcagaatcccataataggcaaaat 4841946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 217
Target Start/End: Complemental strand, 33583854 - 33583774
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaa 217  Q
    |||| ||||||  |||| || ||| |||||| ||||||||| ||||||  | | |||||||||||||||||||||| ||||    
T  33583854 ttgtcaaaatcgcgacttaagtcccaaaatccaggatttttagactttaattagcttcaacgactcaaatccatagcagaa 33583774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0510 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 145 - 247
Target Start/End: Complemental strand, 218 - 115
Alignment:
Q  145 atcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaatagg-taaaatccatcgat 243  Q
    |||| |||| ||||||||||||  ||||||||  |||||||||||| ||||||||||||||||||||||| ||| | ||||||||  |||||||||||||    
T  218 atcccgacttaaatcctaaaatgcaggattttgcgactttcttcacgttcaacgactcaaatccatagtaaaattctaaaataggcgaaaatccatcgat 119  T
Q  244 tttg 247  Q
    ||||    
T  118 tttg 115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 93829 - 93721
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| ||||||| |||| ||||||||||||| || |||||  || |||||||||| ||||| |||||||||||||| ||||| | ||||||||  |||||    
T  93829 ttgtcaaaatcccgacttaaatcctaaaatccagaatttt--gattttcttcaccctcaacaactcaaatccatagaagaattctaaaataggcgaaatc 93732  T
Q  237 catcgattttg 247  Q
    |||||||||||    
T  93731 catcgattttg 93721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 8447 - 8557
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatc 236  Q
    |||| |||||||  ||| ||||||||||||| | ||||||  ||||||||||||||||||||||| ||||| || ||||||| | |||||| | ||||||    
T  8447 ttgtcaaaatccctacttaaatcctaaaatccacgattttgcgactttcttcaccttcaacgacttaaatctattgtagaatcccaaaataagcaaaatc 8546  T
Q  237 catcgattttg 247  Q
    ||| |||||||    
T  8547 cattgattttg 8557  T

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Target: scaffold0417 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 246
Target Start/End: Complemental strand, 7573 - 7471
Alignment:
Q  144 aatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatccatcgat 243  Q
    ||||| |||| |||| |||||||  ||||||||  ||||||||| |||||||||||   |||||||||||||||| | |||||||| ||||| |||||||    
T  7573 aatcccgacttaaattctaaaattcaggattttgcgactttctttaccttcaacgaacaaaatccatagtagaatcctaaaataggcaaaattcatcgat 7474  T
Q  244 ttt 246  Q
    |||    
T  7473 ttt 7471  T

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Target: scaffold0048 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 48913 - 48839
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccata 211  Q
    |||||||||| | |||| ||||||||||||| || |||||   ||||| ||||||||||||||||||||||||||    
T  48913 ttgtgaaaattccgacttaaatcctaaaatctagaattttgcaactttattcaccttcaacgactcaaatccata 48839  T

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Target: scaffold0603 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 212
Target Start/End: Complemental strand, 9145 - 9070
Alignment:
Q  137 ttgtgaaaatcctgactgaaatcctaaaatcgaggatttttggactttcttcaccttcaacgactcaaatccatag 212  Q
    |||| |||||||||| | ||||  ||||||  ||||||||  || ||| |||||||||||||||||||||||||||    
T  9145 ttgtcaaaatcctgatttaaattttaaaatgtaggattttgtgattttattcaccttcaacgactcaaatccatag 9070  T

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Target: scaffold0036 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 237
Target Start/End: Complemental strand, 37242 - 37191
Alignment:
Q  186 ttcaccttcaacgactcaaatccatagtagaatacaaaaataggtaaaatcc 237  Q
    |||||||||||| |||||||||||||| |||||   ||||||||||||||||    
T  37242 ttcaccttcaacaactcaaatccatagcagaatcttaaaataggtaaaatcc 37191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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