View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14097_low_34 (Length: 247)
Name: NF14097_low_34
Description: NF14097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14097_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 24 - 234
Target Start/End: Original strand, 5352034 - 5352243
Alignment:
| Q |
24 |
gaaacaactttaagttccataaattgcttcaatcgtgatttttattcaattaataaaacgtatttgttctttatttacatttagaattttatttgcattg |
123 |
Q |
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| T |
5352034 |
gaaacaactttaagttccataaattgcttcaatcgtgatttttattcaattaaaaaaatgtatt-gttctttatttgcatttagaattttatttgcattg |
5352132 |
T |
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| Q |
124 |
ttgccttgtcctgtgttttatttgcaatgttatgttgaagtttgttaaaattccatgtattattatgaaataatagtcttgtcacattattcattctggt |
223 |
Q |
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| T |
5352133 |
ttgccttgtcctgtgtttgatttacaatgttatgttgaagtttgttaaaattccatgtattattatgaaataatagtcttgtcacattattcattctggt |
5352232 |
T |
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| Q |
224 |
attacacaggt |
234 |
Q |
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|||||| |||| |
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| T |
5352233 |
attacataggt |
5352243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 5345382 - 5345433
Alignment:
| Q |
161 |
aagtttgttaaaattccatgtattattatgaaataatagtcttgtcacattattc |
215 |
Q |
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| T |
5345382 |
aagtttgttaaaattccatgca--att-tgaaataatagtcttgtcacattattc |
5345433 |
T |
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