View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14097_low_35 (Length: 243)

Name: NF14097_low_35
Description: NF14097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14097_low_35
NF14097_low_35
[»] chr6 (31 HSPs)
chr6 (21-243)||(4574316-4574538)
chr6 (21-243)||(4560514-4560736)
chr6 (21-243)||(4598179-4598401)
chr6 (21-232)||(4563719-4563930)
chr6 (26-241)||(4579445-4579660)
chr6 (21-232)||(4585644-4585855)
chr6 (21-232)||(4592239-4592450)
chr6 (21-243)||(4570980-4571202)
chr6 (23-240)||(4516331-4516548)
chr6 (23-243)||(4613620-4613840)
chr6 (57-237)||(4625995-4626175)
chr6 (21-243)||(4557133-4557355)
chr6 (21-242)||(4617030-4617251)
chr6 (21-232)||(3171749-3171960)
chr6 (21-232)||(4480701-4480912)
chr6 (21-243)||(4601797-4602019)
chr6 (32-232)||(4490268-4490468)
chr6 (21-232)||(4504310-4504521)
chr6 (29-243)||(4622158-4622372)
chr6 (21-237)||(4469811-4470027)
chr6 (94-243)||(4256514-4256663)
chr6 (21-243)||(4461131-4461353)
chr6 (21-243)||(4515023-4515245)
chr6 (21-243)||(4505865-4506087)
chr6 (32-242)||(4568072-4568285)
chr6 (87-243)||(4260056-4260212)
chr6 (29-243)||(4267068-4267282)
chr6 (21-231)||(4492963-4493173)
chr6 (148-237)||(4457729-4457818)
chr6 (113-220)||(4299671-4299778)
chr6 (21-119)||(4392052-4392150)
[»] chr8 (3 HSPs)
chr8 (21-240)||(16686172-16686391)
chr8 (21-243)||(20863745-20863967)
chr8 (21-243)||(1674234-1674456)
[»] scaffold0477 (1 HSPs)
scaffold0477 (29-220)||(4611-4802)
[»] scaffold0288 (1 HSPs)
scaffold0288 (21-243)||(3621-3843)
[»] chr7 (1 HSPs)
chr7 (21-243)||(3086428-3086650)
[»] chr5 (2 HSPs)
chr5 (25-243)||(28000001-28000219)
chr5 (29-243)||(24103015-24103229)
[»] chr3 (1 HSPs)
chr3 (21-242)||(1281122-1281343)
[»] scaffold0475 (1 HSPs)
scaffold0475 (164-231)||(3598-3665)


Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 4574316 - 4574538
Alignment:
Q  21 taagcaacacctccttaatcgctttctccaagttcgtgtatgaacaacctccaggtctcgtgtccacctccgccttcttcttcagctcaatggccttttg 120  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  4574316 taagcaacacctccttaatcactttctccaagtttgtgtatgaacaacctccaggtctcgtgtccacctccaccttcttcttcagctcaatggctttttg 4574415  T
Q  121 cctcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccat 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4574416 cctcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccat 4574515  T
Q  221 tcattgcaaatatatctgcagtt 243  Q
    |||||||||||||||||||||||    
T  4574516 tcattgcaaatatatctgcagtt 4574538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 4560514 - 4560736
Alignment:
Q  21 taagcaacacctccttaatcgctttctccaagttcgtgtatgaacaacctccaggtctcgtgtccacctccgccttcttcttcagctcaatggccttttg 120  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||    
T  4560514 taagcaacacctccttaatcactttctccaagttcatgtatgaacaacctccaggtctcgtgtacacctccgcctttttcttcagctccatggccttttg 4560613  T
Q  121 cctcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccat 220  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||| ||||    
T  4560614 cctcatcttctttcctttatctcaggacatcaattcattgaccagtttctccacgtcctccctctttacatttgtatcaatttcgtttccaatcttccat 4560713  T
Q  221 tcattgcaaatatatctgcagtt 243  Q
    ||||||||||||||||| |||||    
T  4560714 tcattgcaaatatatcttcagtt 4560736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 4598179 - 4598401
Alignment:
Q  21 taagcaacacctccttaatcgctttctccaagttcgtgtatgaacaacctccaggtctcgtgtccacctccgccttcttcttcagctcaatggccttttg 120  Q
    |||| ||||||||||||||| ||||||| |||||| ||||||||||||||||| ||||||| ||| ||||||||||| ||||||  ||||| | ||||||    
T  4598179 taagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcgtttcctcctccgccttcatcttcaaatcaattgtcttttg 4598278  T
Q  121 cctcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccat 220  Q
    |||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||||| ||||| |||||||| || ||||   ||||||||||||||    
T  4598279 cctcattttctttcctttatctcccgacatcaattcgttgaccagcttctccacctcctctctcttcacattagtttcaattttgattccaatctcccat 4598378  T
Q  221 tcattgcaaatatatctgcagtt 243  Q
    |||||||||||||||||||||||    
T  4598379 tcattgcaaatatatctgcagtt 4598401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 21 - 232
Target Start/End: Original strand, 4563719 - 4563930
Alignment:
Q  21 taagcaacacctccttaatcgctttctccaagttcgtgtatgaacaacctccaggtctcgtgtccacctccgccttcttcttcagctcaatggccttttg 120  Q
    ||||||| |||||||| ||| |||| ||||||||| |||||||||||||||||| ||||||||   ||||| | |||||||||| |||||| ||||||||    
T  4563719 taagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttttcctccactttcttcttcaactcaattgccttttg 4563818  T
Q  121 cctcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccat 220  Q
    || ||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| || ||||||||||| |||||||||||| | ||||||||||||    
T  4563819 ccgcatcttctttcctttctctcctgacatcaattcattgacaagtttctccacctcttctctctttacattcgtatcgatttccatcccaatctcccat 4563918  T
Q  221 tcattgcaaata 232  Q
    |||||| |||||    
T  4563919 tcattgtaaata 4563930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 26 - 241
Target Start/End: Original strand, 4579445 - 4579660
Alignment:
Q  26 aacacctccttaatcgctttctccaagttcgtgtatgaacaacctccaggtctcgtgtccacctccgccttcttcttcagctcaatggccttttgcctca 125  Q
    ||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||| ||||| |||||||||||| |||||| |||||||||||||    
T  4579445 aacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaattgccttttgcctca 4579544  T
Q  126 tcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccattcatt 225  Q
    |||||||| |||| |||||   |||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||||||  ||||||| | ||||  |||    
T  4579545 tcttctttgctttctctcccaccatcaattcattaaccagcttctccacctcctctctcttcacattagtgtcgatttcaattccaattttccatgtatt 4579644  T
Q  226 gcaaatatatctgcag 241  Q
    ||| | ||||||||||    
T  4579645 gcataaatatctgcag 4579660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 21 - 232
Target Start/End: Original strand, 4585644 - 4585855
Alignment:
Q  21 taagcaacacctccttaatcgctttctccaagttcgtgtatgaacaacctccaggtctcgtgtccacctccgccttcttcttcagctcaatggccttttg 120  Q
    ||||||| |||||||||||| |||| ||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||| ||| || ||||||||    
T  4585644 taagcaaaacctccttaatcactttttccaagtttatgtatgaacaacctccaggtctcgtgtcctcctccgccttcttcttcaactcgattgccttttg 4585743  T
Q  121 cctcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccat 220  Q
    ||||||||||||||| || |||||   |||||||||||||||||  |||||||||||||| ||||| ||||| || || | |||| | ||||||||||||    
T  4585744 cctcatcttctttccattctctcccaccatcaattcattgaccaacttctccacctcctctctcttcacattggtgtcaacttccatcccaatctcccat 4585843  T
Q  221 tcattgcaaata 232  Q
    ||||||||||||    
T  4585844 tcattgcaaata 4585855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 21 - 232
Target Start/End: Original strand, 4592239 - 4592450
Alignment:
Q  21 taagcaacacctccttaatcgctttctccaagttcgtgtatgaacaacctccaggtctcgtgtccacctccgccttcttcttcagctcaatggccttttg 120  Q
    |||||||||||||||| |||  ||| ||||||||| | ||||||||||||||||||||||||| | |||| ||||||||||||| ||| || |||||||     
T  4592239 taagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgttctcctctgccttcttcttcaactcgattgccttttt 4592338  T
Q  121 cctcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccat 220  Q
    |||||||||||||||||| |||||   ||||||||||||||  ||||||||||||||||| ||||||||||| ||||| |||||| | ||||||||||||    
T  4592339 cctcatcttctttcctttctctcccaccatcaattcattgataagtttctccacctcctctctctttacattcgtatcaatttccatcccaatctcccat 4592438  T
Q  221 tcattgcaaata 232  Q
    |||||| |||||    
T  4592439 tcattgtaaata 4592450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 4570980 - 4571202
Alignment:
Q  21 taagcaacacctccttaatcgctttctccaagttcgtgtatgaacaacctccaggtctcgtgtccacctccgccttcttcttcagctcaatggccttttg 120  Q
    ||||||| |||||||||||| |||| ||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||| ||| ||    ||||     
T  4570980 taagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcttcttcatctccattatattttt 4571079  T
Q  121 cctcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccat 220  Q
    ||||||||||||||||||||||||   |||||||||||||||||  ||||||||||| |  ||||| |||||||||||||||||  ||||||||||||||    
T  4571080 cctcatcttctttcctttatctcccaccatcaattcattgaccaaattctccacctcatttctcttcacattagtatcgatttcgattccaatctcccat 4571179  T
Q  221 tcattgcaaatatatctgcagtt 243  Q
      |||||| |||||||| |||||    
T  4571180 gtattgcagatatatctacagtt 4571202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 23 - 240
Target Start/End: Original strand, 4516331 - 4516548
Alignment:
Q  23 agcaacacctccttaatcgctttctccaagttcgtgtatgaacaacctccaggtctcgtgtccacctccgccttcttcttcagctcaatggccttttgcc 122  Q
    |||| ||||||||||||| |||| |||||||||   ||||||||||| || ||||| |||||| |||| |||||||||||||  || |||||||||||||    
T  4516331 agcagcacctccttaatcactttttccaagttcacatatgaacaaccacctggtcttgtgtcctcctctgccttcttcttcaattccatggccttttgcc 4516430  T
Q  123 tcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccattc 222  Q
    ||||||||||||||||||||||   ||| |||||||||| ||| |||||||||||||| ||||| ||||| ||||| |||||   |||||||||||||||    
T  4516431 tcatcttctttcctttatctcccaccattaattcattgatcagcttctccacctcctctctcttcacattggtatcaatttctgctccaatctcccattc 4516530  T
Q  223 attgcaaatatatctgca 240  Q
    ||||||||||||||||||    
T  4516531 attgcaaatatatctgca 4516548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 23 - 243
Target Start/End: Complemental strand, 4613840 - 4613620
Alignment:
Q  23 agcaacacctccttaatcgctttctccaagttcgtgtatgaacaacctccaggtctcgtgtccacctccgccttcttcttcagctcaatggccttttgcc 122  Q
    |||| |||||| || ||| |||| ||||||||| | |||||||||||||| |||||||||||| |||| ||||||||||||| |||||| ||||||||||    
T  4613840 agcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctctgccttcttcttcaactcaattgccttttgcc 4613741  T
Q  123 tcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccattc 222  Q
    |||| ||||||||||| |||||   |||||||||||||||||| ||||| ||||| || ||||| ||||| || || |||||| | ||||| ||||||||    
T  4613740 tcattttctttcctttctctcccaccatcaattcattgaccagcttctctacctcatctctcttcacattggtgtcaatttccatcccaatttcccattc 4613641  T
Q  223 attgcaaatatatctgcagtt 243  Q
    |||||| ||||||||||||||    
T  4613640 attgcatatatatctgcagtt 4613620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 57 - 237
Target Start/End: Original strand, 4625995 - 4626175
Alignment:
Q  57 tgtatgaacaacctccaggtctcgtgtccacctccgccttcttcttcagctcaatggccttttgcctcatcttctttcctttatctccggacatcaattc 156  Q
    ||||||||||||| || || ||  ||| | |||| ||||||||||||| ||| |||||||||||||||||||||||||| |||||||| | ||||||| |    
T  4625995 tgtatgaacaaccaccgggactaatgttctcctctgccttcttcttcaactccatggccttttgcctcatcttctttccgttatctcctgccatcaatgc 4626094  T
Q  157 attgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccattcattgcaaatatatct 237  Q
    ||||| ||||||||| ||| |||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  4626095 attgatcagtttctctaccccctccctcttcacattagcatcgatttccattccaatctcccattcattgcaaatatatct 4626175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 4557133 - 4557355
Alignment:
Q  21 taagcaacacctccttaatcgctttctccaagttcgtgtatgaacaacctccaggtctcgtgtccacctccgccttcttcttcagctcaatggccttttg 120  Q
    ||||||| |||||||||||| |||| ||||| ||| ||||||||||||| ||||||||||||||| ||||||||||| |||||| ||||||   |||||     
T  4557133 taagcaaaacctccttaatcactttttccaaattcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttcatctcaattatcttttt 4557232  T
Q  121 cctcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccat 220  Q
    || ||||||||||||||| || ||   |||||||||||||||||  ||||| ||||| || ||||| ||||| || || |||||| | ||||||||||||    
T  4557233 ccacatcttctttcctttctccccctccatcaattcattgaccaaattctctacctcatctctcttcacattggtgtcaatttccatgccaatctcccat 4557332  T
Q  221 tcattgcaaatatatctgcagtt 243  Q
      |||||||||||||||||||||    
T  4557333 gtattgcaaatatatctgcagtt 4557355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 4617030 - 4617251
Alignment:
Q  21 taagcaacacctccttaatcgctttctccaagttcgtgtatgaacaacctccaggtctcgtgtccacctccgccttcttcttcagctcaatggccttttg 120  Q
    |||||||||| ||||||||  |||| | ||||||| ||||||||||||| || ||||| |||| | |||| ||||||||||||| ||| |||||||||||    
T  4617030 taagcaacacatccttaataactttgttcaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactccatggccttttg 4617129  T
Q  121 cctcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccat 220  Q
    | |||| |||||||||||||||||||  |||| |||||||| ||| ||  ||| |||||| ||||| ||||| |||||||||||| | ||||||||||||    
T  4617130 cttcattttctttcctttatctccggctatcacttcattgatcagctttgccaactcctctctcttcacattcgtatcgatttccataccaatctcccat 4617229  T
Q  221 tcattgcaaatatatctgcagt 242  Q
    ||||| |||||| |||| ||||    
T  4617230 tcattacaaataaatctacagt 4617251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 21 - 232
Target Start/End: Original strand, 3171749 - 3171960
Alignment:
Q  21 taagcaacacctccttaatcgctttctccaagttcgtgtatgaacaacctccaggtctcgtgtccacctccgccttcttcttcagctcaatggccttttg 120  Q
    ||||||| |||||||||||| |||| ||||||||| ||||||||||||| |||  ||| || ||| |||| ||||||||||||| ||| |||||| ||||    
T  3171749 taagcaagacctccttaatcactttatccaagttcatgtatgaacaaccaccaaatcttgtatcctcctctgccttcttcttcaactccatggccctttg 3171848  T
Q  121 cctcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccat 220  Q
    |||||||||||||||||| |||||   ||||||||| |||| ||||||||| |||||| | ||||||||||| ||||| |||||| | ||||||| ||||    
T  3171849 cctcatcttctttcctttctctcccaccatcaattcgttgatcagtttctctacctcccctctctttacattggtatcaatttccatcccaatcttccat 3171948  T
Q  221 tcattgcaaata 232  Q
    || | |||||||    
T  3171949 tcttggcaaata 3171960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 21 - 232
Target Start/End: Original strand, 4480701 - 4480912
Alignment:
Q  21 taagcaacacctccttaatcgctttctccaagttcgtgtatgaacaacctccaggtctcgtgtccacctccgccttcttcttcagctcaatggccttttg 120  Q
    ||||||| |||||||||||| |||| ||||||||| ||||||||||||| |||||||| |||||| |||| ||| ||||||||| ||| |||||||||||    
T  4480701 taagcaagacctccttaatcactttgtccaagttcatgtatgaacaaccaccaggtcttgtgtcctcctctgccatcttcttcaactccatggccttttg 4480800  T
Q  121 cctcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccat 220  Q
    | |||||||||||||||| |||||   || |||||||||||  |   ||||||| || || ||||| ||||| |||||||||||   |||||||||||||    
T  4480801 cttcatcttctttcctttctctcccaccaacaattcattgattaacctctccacatcttctctcttcacattggtatcgatttcgagtccaatctcccat 4480900  T
Q  221 tcattgcaaata 232  Q
    ||||||||||||    
T  4480901 tcattgcaaata 4480912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 4601797 - 4602019
Alignment:
Q  21 taagcaacacctccttaatcgctttctccaagttcgtgtatgaacaacctccaggtctcgtgtccacctccgccttcttcttcagctcaatggccttttg 120  Q
    |||||||||||||||||||  |||| |||| |||| ||||||||||||| ||  |||| |||  | |||  ||| ||||||||| ||| |||||||||||    
T  4601797 taagcaacacctccttaataactttgtccaggttcttgtatgaacaaccacctagtctagtgctctcctttgccatcttcttcaactccatggccttttg 4601896  T
Q  121 cctcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccat 220  Q
    |||||||||||| |||||||||||||  |||| |||||||| ||| ||| ||| |||||| ||||| ||||| |||||||||||| | ||||||||||||    
T  4601897 cctcatcttcttgcctttatctccggctatcacttcattgatcagcttcgccaactcctctctcttcacatttgtatcgatttccataccaatctcccat 4601996  T
Q  221 tcattgcaaatatatctgcagtt 243  Q
    ||||| |||||| |||| |||||    
T  4601997 tcattacaaataaatctacagtt 4602019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 32 - 232
Target Start/End: Complemental strand, 4490468 - 4490268
Alignment:
Q  32 tccttaatcgctttctccaagttcgtgtatgaacaacctccaggtctcgtgtccacctccgccttcttcttcagctcaatggccttttgcctcatcttct 131  Q
    ||||||||| |||| ||||||||| ||||||||| ||| ||  ||||||||||| || | ||||||||||||| |||  | |||||||||||||||||||    
T  4490468 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgtcctccgctgccttcttcttcaactccgtcgccttttgcctcatcttct 4490369  T
Q  132 ttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccattcattgcaaat 231  Q
    ||||||| |||||   |||||||||||||| ||||||||| ||||| || ||||||||||| ||||| |||| | | |||||||||||||| | ||||||    
T  4490368 ttcctttctctcccaccatcaattcattgatcagtttctctacctcttctctctttacattggtatcaattttcatcccaatctcccattcttcgcaaat 4490269  T
Q  232 a 232  Q
    |    
T  4490268 a 4490268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 21 - 232
Target Start/End: Complemental strand, 4504521 - 4504310
Alignment:
Q  21 taagcaacacctccttaatcgctttctccaagttcgtgtatgaacaacctccaggtctcgtgtccacctccgccttcttcttcagctcaatggccttttg 120  Q
    ||||||| || ||||||||| |||| ||||||||| ||||||||||||| ||| |||| |||||| |||| ||||||||||||| ||| |||||||||||    
T  4504521 taagcaagacgtccttaatcactttgtccaagttcatgtatgaacaaccaccaagtcttgtgtcctcctctgccttcttcttcaactccatggccttttg 4504422  T
Q  121 cctcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccat 220  Q
    |||||||||||||||||| |||||   |||||||||||| |  |||||||| ||||| || |||| |||||| | ||| || | | | ||||||||||||    
T  4504421 cctcatcttctttcctttctctcccaccatcaattcattaataagtttctctacctcttctctctgtacattggcatcaatcttcatcccaatctcccat 4504322  T
Q  221 tcattgcaaata 232  Q
    || | |||||||    
T  4504321 tcttcgcaaata 4504310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 29 - 243
Target Start/End: Original strand, 4622158 - 4622372
Alignment:
Q  29 acctccttaatcgctttctccaagttcgtgtatgaacaacctccaggtctcgtgtccacctccgccttcttcttcagctcaatggccttttgcctcatct 128  Q
    |||||||||||  |||| ||||||||  ||||||||||||| ||||| || ||   | | || ||||||| ||||| ||| ||||||||||| |||||||    
T  4622158 acctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggccttttgtctcatct 4622257  T
Q  129 tctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccattcattgca 228  Q
    |||||||||||||||| |||||||||||||||| ||| |||  ||||||||| || || |||||||||| ||||||  ||||||||||||||  ||||||    
T  4622258 tctttcctttatctcccgacatcaattcattgatcagattcgacacctcctctcttttcacattagtattgatttcgattccaatctcccatgaattgca 4622357  T
Q  229 aatatatctgcagtt 243  Q
     |||||||| |||||    
T  4622358 gatatatctacagtt 4622372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 21 - 237
Target Start/End: Original strand, 4469811 - 4470027
Alignment:
Q  21 taagcaacacctccttaatcgctttctccaagttcgtgtatgaacaacctccaggtctcgtgtccacctccgccttcttcttcagctcaatggccttttg 120  Q
    ||||||| || ||||||||  |||| ||||||||| ||||||||  |||||||||||| || ||| ||||| |||||||||| | ||| |||  |||||     
T  4469811 taagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttcttgaactccatgatcttttc 4469910  T
Q  121 cctcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccat 220  Q
    ||||||||||||||| || |||||   ||||||||||||||| || ||||||||||| || ||||| ||||   ||||||||||   |||||||||||||    
T  4469911 cctcatcttctttccattctctccaaccatcaattcattgactagcttctccacctcatctctcttcacatctttatcgatttcaagtccaatctcccat 4470010  T
Q  221 tcattgcaaatatatct 237  Q
    |||||||||||| ||||    
T  4470011 tcattgcaaataaatct 4470027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 94 - 243
Target Start/End: Complemental strand, 4256663 - 4256514
Alignment:
Q  94 cttcttcttcagctcaatggccttttgcctcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacatta 193  Q
    |||||||||||  || ||| ||||||||||||||||||||||||| ||||| |||||||||||||||| ||| ||||||||||| || ||||| ||||||    
T  4256663 cttcttcttcaattccatgaccttttgcctcatcttctttcctttttctcccgacatcaattcattgatcagattctccacctcatctctcttcacatta 4256564  T
Q  194 gtatcgatttcctttccaatctcccattcattgcaaatatatctgcagtt 243  Q
    |||| ||||||  ||||||||||||||||  | |||||| |||| |||||    
T  4256563 gtattgatttcaattccaatctcccattcgctacaaataaatctacagtt 4256514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 4461131 - 4461353
Alignment:
Q  21 taagcaacacctccttaatcgctttctccaagttcgtgtatgaacaacctccaggtctcgtgtccacctccgccttcttcttcagctcaatggccttttg 120  Q
    ||||||| || ||||||||  |||| ||||||||| ||||||||  |||||||||||| || ||| ||||| |||||||||| |  || ||| |||||||    
T  4461131 taagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttcttgaattccatgaccttttg 4461230  T
Q  121 cctcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccat 220  Q
    |||||||||||||||  | |||||   ||||||||| |||||||  ||||||||||| |||||||| ||||   ||||||||||   |||||||||||||    
T  4461231 cctcatcttctttccaatctctccaaccatcaattcgttgaccaacttctccacctcatccctcttcacatctttatcgatttcaagtccaatctcccat 4461330  T
Q  221 tcattgcaaatatatctgcagtt 243  Q
    |  ||||||||| |||| |||||    
T  4461331 ttgttgcaaataaatctacagtt 4461353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 243
Target Start/End: Complemental strand, 4515245 - 4515023
Alignment:
Q  21 taagcaacacctccttaatcgctttctccaagttcgtgtatgaacaacctccaggtctcgtgtccacctccgccttcttcttcagctcaatggccttttg 120  Q
    |||||||||||||||| ||| |||| |||||||||  ||||||| | || ||| |||| |||||| | || |||||||| |||| ||| ||  ||||||     
T  4515245 taagcaacacctccttgatcactttgtccaagttcaagtatgaagacccgccaagtctagtgtcctcgtctgccttctttttcaactccataaccttttt 4515146  T
Q  121 cctcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccat 220  Q
    |||||| || |||||||| |||||   ||||||||||||||| || || || |||||||| ||||| |||||  ||||||||||  | ||||||||||||    
T  4515145 cctcattttatttcctttctctcccaccatcaattcattgacaagcttttcaacctcctctctcttcacattcatatcgatttcgatcccaatctcccat 4515046  T
Q  221 tcattgcaaatatatctgcagtt 243  Q
    |||||||||||| |||| |||||    
T  4515045 tcattgcaaataaatctacagtt 4515023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 4505865 - 4506087
Alignment:
Q  21 taagcaacacctccttaatcgctttctccaagttcgtgtatgaacaacctccaggtctcgtgtccacctccgccttcttcttcagctcaatggccttttg 120  Q
    |||||||||||||||||||  |||| ||||||||| || |||||||||| |||||||| || ||| |||  ||| |||| |||| ||| ||| ||||||     
T  4505865 taagcaacacctccttaataactttgtccaagttcatgaatgaacaaccaccaggtcttgtatcctcctttgccctctttttcaactccatgaccttttt 4505964  T
Q  121 cctcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccat 220  Q
    ||||||||| |||||||| |||||   ||| | ||||| |||||| ||||| || |  || || || ||||||||||| |||||  ||||||||||| ||    
T  4505965 cctcatcttgtttcctttctctccaaccataatttcatcgaccagcttctctacattttctctattcacattagtatcaatttcgattccaatctccaat 4506064  T
Q  221 tcattgcaaatatatctgcagtt 243  Q
    |||||||||||| |||| |||||    
T  4506065 tcattgcaaataaatctacagtt 4506087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 32 - 242
Target Start/End: Original strand, 4568072 - 4568285
Alignment:
Q  32 tccttaatcgctttctccaagttcgtgtatgaacaacctccaggtctcgtgtccacctccgccttc---ttcttcagctcaatggccttttgcctcatct 128  Q
    ||||||||| |||| ||||||||| |||||||| || | |||||||| ||||||  ||| ||||||   ||||||| ||| | |||||||||||||||||    
T  4568072 tccttaatcactttgtccaagttcatgtatgaagaatcaccaggtcttgtgtccttctctgccttcttcttcttcaactccacggccttttgcctcatct 4568171  T
Q  129 tctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccattcattgca 228  Q
    | |||||||| | |||   ||| |||||||| | ||| |||||||||||||| ||||| ||||| ||||| |||||  |||| |||||| | | ||| ||    
T  4568172 tttttcctttctgtcccaccattaattcattcatcagcttctccacctcctctctcttcacatttgtatcaatttcgattccgatctccaacttattaca 4568271  T
Q  229 aatatatctgcagt 242  Q
    ||||||||||||||    
T  4568272 aatatatctgcagt 4568285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 87 - 243
Target Start/End: Complemental strand, 4260212 - 4260056
Alignment:
Q  87 cctccgccttcttcttcagctcaatggccttttgcctcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctt 186  Q
    |||| |||||| |||||| ||| ||| ||||||||||||||||||||||||  ||||| ||||| | |||||||| ||| ||| ||||||| || || ||    
T  4260212 cctctgccttcctcttcaactccatgaccttttgcctcatcttctttccttcttctcctgacataatttcattgatcagcttcgccacctcatctctttt 4260113  T
Q  187 tacattagtatcgatttcctttccaatctcccattcattgcaaatatatctgcagtt 243  Q
     ||||||||||  |||||  |||||||||||||||| || |||||| |||| |||||    
T  4260112 cacattagtattaatttcaattccaatctcccattcgttacaaataaatctacagtt 4260056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 243
Target Start/End: Complemental strand, 4267282 - 4267068
Alignment:
Q  29 acctccttaatcgctttctccaagttcgtgtatgaacaacctccaggtctcgtgtccacctccgccttcttcttcagctcaatggccttttgcctcatct 128  Q
    |||||||||||  |||| ||||||||| |||||||| |||| |||||||| |||| | | || |||||| |||||| ||| | | | |||||| |||||     
T  4267282 acctccttaataactttgtccaagttcatgtatgaaaaaccaccaggtcttgtgttctcttctgccttcctcttcaactccaagacattttgcttcatca 4267183  T
Q  129 tctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccattcattgca 228  Q
    | |||||||| |||||   ||||||||||||||| |  ||||| || || || ||||| ||||| |||| ||||||   ||||||||||||||||| |||    
T  4267182 tatttcctttctctcccaccatcaattcattgactaacttctcgacgtcatctctcttcacatttgtattgatttcgagtccaatctcccattcatagca 4267083  T
Q  229 aatatatctgcagtt 243  Q
    |||| |||| |||||    
T  4267082 aataaatctacagtt 4267068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 231
Target Start/End: Original strand, 4492963 - 4493173
Alignment:
Q  21 taagcaacacctccttaatcgctttctccaagttcgtgtatgaacaacctccaggtctcgtgtccacctccgccttcttcttcagctcaatggccttttg 120  Q
    ||||||| || ||||| ||| |||| ||||||||| ||||||||||||| ||||||   |||||| |||| |||||||| |||| |||  |||| |||      
T  4492963 taagcaagacatccttgatcactttgtccaagttcatgtatgaacaaccaccaggtactgtgtcctcctctgccttctttttcaactccgtggcttttct 4493062  T
Q  121 cctcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccat 220  Q
    ||||||||| |||||||| |||||   ||| |  ||||||||||| |||||||| |  || || || |||||  ||||||||||   |||||||||| ||    
T  4493063 cctcatcttgtttcctttctctccaaccataatctcattgaccagattctccacattttctctattaacattcctatcgatttctactccaatctccaat 4493162  T
Q  221 tcattgcaaat 231  Q
    |||||||||||    
T  4493163 tcattgcaaat 4493173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 148 - 237
Target Start/End: Original strand, 4457729 - 4457818
Alignment:
Q  148 catcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccattcattgcaaatatatct 237  Q
    ||||||||||||||| |  ||||||||||| || ||||| ||||| |||||||||||| | |||||||| ||||||||||||||| ||||    
T  4457729 catcaattcattgactaacttctccacctcatctctcttcacatttgtatcgatttccatcccaatctctcattcattgcaaataaatct 4457818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 220
Target Start/End: Complemental strand, 4299778 - 4299671
Alignment:
Q  113 gccttttgcctcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaa 212  Q
    |||||||| |||||||| | |||||| |||||   |||||||||||||| ||| || ||||||||||| ||| | ||||| |||||||||||  ||||||    
T  4299778 gccttttgtctcatcttatctcctttctctcccaccatcaattcattgatcagcttttccacctcctctctcctcacatttgtatcgatttcgattccaa 4299679  T
Q  213 tctcccat 220  Q
    ||||||||    
T  4299678 tctcccat 4299671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 4392150 - 4392052
Alignment:
Q  21 taagcaacacctccttaatcgctttctccaagttcgtgtatgaacaacctccaggtctcgtgtccacctccgccttcttcttcagctcaatggcctttt 119  Q
    ||||||| ||||||||||||  ||| ||||||||| || ||||| |||| |||||||  |||||| |||  ||||||||||||| ||| || |||||||    
T  4392150 taagcaagacctccttaatcagtttgtccaagttcatgaatgaagaaccaccaggtcatgtgtcctcctttgccttcttcttcaactcgatcgcctttt 4392052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 16686391 - 16686172
Alignment:
Q  21 taagcaacacctccttaatcgctttctccaagttcgtgtatgaacaacctccaggtctcgtgtccacctccgccttcttcttcagctcaatggccttttg 120  Q
    ||||||| |||||| ||||| |||| ||||||||| ||||||||||||| |||||||||| |||  | ||| ||||| | | ||| |||||   |||||     
T  16686391 taagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtctcgggtcttcgtccaccttcatttgcagttcaattatcttttt 16686292  T
Q  121 cctcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccat 220  Q
    |||||||||||||||||| |||||   ||||||||||||||||| |||||||||||| || ||||| ||||| || || |||||| | ||||||||||||    
T  16686291 cctcatcttctttcctttctctcccaccatcaattcattgaccaatttctccacctcatctctcttcacattggtgtcaatttccatgccaatctcccat 16686192  T
Q  221 tcattgcaaatatatctgca 240  Q
    ||||||||||||||||||||    
T  16686191 tcattgcaaatatatctgca 16686172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 21 - 243
Target Start/End: Complemental strand, 20863967 - 20863745
Alignment:
Q  21 taagcaacacctccttaatcgctttctccaagttcgtgtatgaacaacctccaggtctcgtgtccacctccgccttcttcttcagctcaatggccttttg 120  Q
    |||||||||||||||||||| |||| ||||||||| | ||||||| |||| | ||||| |||||| |||| ||||||||||||| |||| | | ||||||    
T  20863967 taagcaacacctccttaatcactttgtccaagttcatatatgaaccaccttccggtcttgtgtcctcctctgccttcttcttcaactcatttgtcttttg 20863868  T
Q  121 cctcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccat 220  Q
    ||||||| || ||||||| |||||   |||||||||||| |||||  ||||||||||||| ||||| ||||| || || |||||  | ||||||||||||    
T  20863867 cctcatcctccttcctttctctcccaccatcaattcatttaccagcatctccacctcctctctcttgacattggtgtcaatttcgatcccaatctcccat 20863768  T
Q  221 tcattgcaaatatatctgcagtt 243  Q
    |  |||||||| |||||||||||    
T  20863767 ttgttgcaaatgtatctgcagtt 20863745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 1674234 - 1674456
Alignment:
Q  21 taagcaacacctccttaatcgctttctccaagttcgtgtatgaacaacctccaggtctcgtgtccacctccgccttcttcttcagctcaatggccttttg 120  Q
    |||||||||| ||||||||| |||| ||||||||| ||||||||||||| || ||||| |||| | |||| |||||||||||||  || |||||||||||    
T  1674234 taagcaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaattccatggccttttg 1674333  T
Q  121 cctcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccat 220  Q
    ||||||||| ||||| || |||||   ||||||||||||||  || |||||||   |||| ||||| ||||| ||||| |||||| | ||||||| ||||    
T  1674334 cctcatcttttttccattctctcccaccatcaattcattgataagcttctccaaaccctctctcttcacattcgtatcaatttccataccaatcttccat 1674433  T
Q  221 tcattgcaaatatatctgcagtt 243  Q
    ||||| |||||| |||| |||||    
T  1674434 tcattacaaataaatctacagtt 1674456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 29 - 220
Target Start/End: Complemental strand, 4802 - 4611
Alignment:
Q  29 acctccttaatcgctttctccaagttcgtgtatgaacaacctccaggtctcgtgtccacctccgccttcttcttcagctcaatggccttttgcctcatct 128  Q
    |||||||||||| |||| ||||||||| |||||||||| || ||||  || |||| | |||| ||||||||||||| ||| |||||||||||||||||||    
T  4802 acctccttaatcactttgtccaagttcatgtatgaacagccaccagaactggtgttctcctctgccttcttcttcaactccatggccttttgcctcatct 4703  T
Q  129 tctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccat 220  Q
    || ||||||||||||| |||||||||||||||| ||  |||   |||| ||| ||||| ||||||||||| |||||| | ||| ||||||||    
T  4702 tcattcctttatctcccgacatcaattcattgatcatattcgttaccttctctctcttcacattagtatcaatttccataccagtctcccat 4611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 243
Target Start/End: Complemental strand, 3843 - 3621
Alignment:
Q  21 taagcaacacctccttaatcgctttctccaagttcgtgtatgaacaacctccaggtctcgtgtccacctccgccttcttcttcagctcaatggccttttg 120  Q
    ||||||| |||||||||||  |||| |||| |||| ||||||||| ||| || ||||| |||| | |||| ||||||||||| | ||| | |||||||||    
T  3843 taagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttctttaactccacggccttttg 3744  T
Q  121 cctcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccat 220  Q
    |||||||||||||||||| |||||   | ||||||||||||| || ||||||||||| || ||||| ||||   ||||||||||   |||||||||||||    
T  3743 cctcatcttctttcctttctctcccaccgtcaattcattgactagcttctccacctcatctctcttcacatccatatcgatttcaagtccaatctcccat 3644  T
Q  221 tcattgcaaatatatctgcagtt 243  Q
    || ||||||||| |||| |||||    
T  3643 tcgttgcaaataaatctacagtt 3621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 3086428 - 3086650
Alignment:
Q  21 taagcaacacctccttaatcgctttctccaagttcgtgtatgaacaacctccaggtctcgtgtccacctccgccttcttcttcagctcaatggccttttg 120  Q
    ||||||| |||||||||||  |||| ||||||||| ||||||||||||| ||    || |||| | | || || |||||||| | |||   | | |||||    
T  3086428 taagcaagacctccttaataactttgtccaagttcatgtatgaacaaccaccgatactggtgttctcttctgctttcttctttaactctgcgacattttg 3086527  T
Q  121 cctcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccat 220  Q
    ||||||||||||||||||||||||   |||||||||||||| ||| ||||| |||||||| ||||| |||||||||||||||||  ||||||||||||||    
T  3086528 cctcatcttctttcctttatctcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccat 3086627  T
Q  221 tcattgcaaatatatctgcagtt 243  Q
      |||||| |||||||| |||||    
T  3086628 atattgcagatatatctacagtt 3086650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 243
Target Start/End: Complemental strand, 28000219 - 28000001
Alignment:
Q  25 caacacctccttaatcgctttctccaagttcgtgtatgaacaacctccaggtctcgtgtccacctccgccttcttcttcagctcaatggccttttgcctc 124  Q
    |||||| ||||||||| |||| ||||||||| ||||||||||||| || ||||| |||| | |||| ||||| ||||||| ||| |||||||||||||||    
T  28000219 caacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgcctttttcttcaactccatggccttttgcctc 28000120  T
Q  125 atcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccattcat 224  Q
    ||||| ||||| || |||||   ||||||||||||||  || |||||||  |||||  |||| |||||  |||| |||||| | ||||||| ||||||||    
T  28000119 atcttttttccattctctcccaccatcaattcattgataagcttctccaaatcctctatcttcacattcatatcaatttccataccaatcttccattcat 28000020  T
Q  225 tgcaaatatatctgcagtt 243  Q
    | |||||| |||| |||||    
T  28000019 tacaaataaatctacagtt 28000001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 29 - 243
Target Start/End: Original strand, 24103015 - 24103229
Alignment:
Q  29 acctccttaatcgctttctccaagttcgtgtatgaacaacctccaggtctcgtgtccacctccgccttcttcttcagctcaatggccttttgcctcatct 128  Q
    |||||||||||  |||| ||||||||| |||||||| |||| |||| ||| |||| | | || ||||||||||| | ||| | | |||||||| |||||     
T  24103015 acctccttaataactttgtccaagttcatgtatgaaaaaccaccagatcttgtgttctcttctgccttcttcttgaactccaagaccttttgcttcatcg 24103114  T
Q  129 tctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccattcattgca 228  Q
    ||||||| || |||||   ||||||||||||||| |  ||||| || || || ||||| ||||| |||||||||||   ||||||||||||||||| |||    
T  24103115 tctttccgttctctcccaccatcaattcattgactaacttctcgacgtcatctctcttcacatttgtatcgatttcgagtccaatctcccattcatagca 24103214  T
Q  229 aatatatctgcagtt 243  Q
    |||| |||| |||||    
T  24103215 aataaatctacagtt 24103229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 1281122 - 1281343
Alignment:
Q  21 taagcaacacctccttaatcgctttctccaagttcgtgtatgaacaacctccaggtctcgtgtccacctccgccttcttcttcagctcaatggccttttg 120  Q
    |||||||||  ||||||||| |||| || |||||| ||||||||||||| || ||||| |||| | ||||||||  ||||||||  || ||||||||||     
T  1281122 taagcaacatttccttaatcactttgtcgaagttcatgtatgaacaaccacccggtctagtgttctcctccgccgccttcttcaattccatggccttttc 1281221  T
Q  121 cctcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccat 220  Q
     ||||| |||||||||| ||| ||||  ||||||||||||| ||  ||  |||||||||| ||||| ||||| |||||||||||| | ||||||| ||||    
T  1281222 tctcatattctttccttcatccccggctatcaattcattgatcaacttagccacctcctctctcttcacatttgtatcgatttccataccaatcttccat 1281321  T
Q  221 tcattgcaaatatatctgcagt 242  Q
    ||||| |||||| |||| ||||    
T  1281322 tcattacaaataaatctacagt 1281343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 231
Target Start/End: Complemental strand, 3665 - 3598
Alignment:
Q  164 agtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccattcattgcaaat 231  Q
    ||||||||||||||||| ||||| ||||| | ||| |||||  ||||||||||||||||||| |||||    
T  3665 agtttctccacctcctctctcttcacattggaatctatttcacttccaatctcccattcattccaaat 3598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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