View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14097_low_36 (Length: 243)
Name: NF14097_low_36
Description: NF14097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14097_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 13 - 220
Target Start/End: Original strand, 2572346 - 2572553
Alignment:
| Q |
13 |
agcagagaacccagagacgttaccaaggaagaaggaaattaatccaaaggataatcacatatctttccaggtcagattttccctaaaattaaaattattg |
112 |
Q |
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| T |
2572346 |
agcagagaacccagagacgttaccaaggaagaaggaaattaatccaaaggataatcacatatctttccaggtcagattttccctaaacttaaaattattg |
2572445 |
T |
|
| Q |
113 |
attacgtttcaaatttggnnnnnnnntgttacttagaaagaaccaaaatagaagacgtacttcaataaatgaaggaacttgataaaaaatacattgaacc |
212 |
Q |
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| T |
2572446 |
attacgtttcaaatttggaaaaaaaatgtgacttagaaagaaccaaaatagaagacgtacttcaataaatgaaggaacttgataaaaaatacattgaacc |
2572545 |
T |
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| Q |
213 |
taaagtga |
220 |
Q |
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|||||||| |
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| T |
2572546 |
taaagtga |
2572553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 44546196 - 44546148
Alignment:
| Q |
35 |
ccaaggaagaaggaaattaatccaaaggataatcacatatctttccagg |
83 |
Q |
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| T |
44546196 |
ccaaggaagaaggaaattaatacaaaggataatcatatctcattccagg |
44546148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 44555811 - 44555771
Alignment:
| Q |
35 |
ccaaggaagaaggaaattaatccaaaggataatcacatatc |
75 |
Q |
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| T |
44555811 |
ccaaggaagaacgaaattaatccaaaggataatcatatatc |
44555771 |
T |
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