View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14097_low_5 (Length: 624)
Name: NF14097_low_5
Description: NF14097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14097_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 562; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 1 - 605
Target Start/End: Original strand, 42633703 - 42634308
Alignment:
| Q |
1 |
ggatttttagatgaatgagatgatatattattgtcatgtaattttaattactgaaacagtttaaaa-aattaacctccctgctctcttttacagcagagt |
99 |
Q |
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| T |
42633703 |
ggatttttagatgaatgagatgatatattattgtcatgtaattttaattactgaaacagttaaaaaaaattaacccccctgctctcttttacagcagagt |
42633802 |
T |
|
| Q |
100 |
gtctctcaaatttcatttggcgtttagtaattttcactttgctcttttctacactttcattttgcagatatgaaataatttggcaactaagtcatttgac |
199 |
Q |
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|||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42633803 |
gtctttcatatttcatttggcgtttagtaattttcacttggctcttttctacactttcattttgcagatatgaaataatttggcaactaagtcatttgac |
42633902 |
T |
|
| Q |
200 |
tgtcctatcattctgattctgatattgtactaaaacccctagttgaaaatttaatccctaacatgtttcttgtacaagattctgttataccaatatctgc |
299 |
Q |
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| T |
42633903 |
tgtcctatcattctgattctgatattgtactaaaacccctagttgaaaatttaatccctaacatgtttcttgtacaagattctgttataccaatatctgc |
42634002 |
T |
|
| Q |
300 |
agtcttttatttgctttgttgtttacagattgtagtgtggctctgagcgatacggcttaataaccattgcttcaattaattacctgcaattactttgaac |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42634003 |
agtcttttatttgctttgttgtttacagattgtagtgtggctctgagcgctatggcttaataaccattgcttcaattaattacctgcaattactttgaac |
42634102 |
T |
|
| Q |
400 |
ttaaccttactatttttgagatactgataccgctcatttacttttaaatattgaaattgttaggcaaggaaggcactacgagcattaaaagggctggtga |
499 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42634103 |
ttaaccttactatttttgagatactgatactgctcatttacttttaaatattgaaattgttaggcaaggaaggcactacgagcattaaaagggctggtga |
42634202 |
T |
|
| Q |
500 |
aactccaggcactggtgagaggtcatattgagaggaaacgaacagcagagtggctcaaaagaatgcaatcacttttacgagcacaggcacgatttaatgc |
599 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42634203 |
aactccaggcactggtgagaggtcatattgagaggaaacgaacagcagagtggctcaaaagaatgcaatcacttttacgggcacaggcacgatttaatgc |
42634302 |
T |
|
| Q |
600 |
agcacg |
605 |
Q |
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|||||| |
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| T |
42634303 |
agcacg |
42634308 |
T |
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