View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14098_high_13 (Length: 364)
Name: NF14098_high_13
Description: NF14098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14098_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 167 - 348
Target Start/End: Complemental strand, 24055176 - 24054995
Alignment:
| Q |
167 |
aatatacatgaataatgtatacgtgaaagcaatttactttacccacaacaaaacaaattttgatgttataaagactttacgaccctnnnnnnncttctag |
266 |
Q |
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| T |
24055176 |
aatatacatgaataatgtatacgtgaaagcaatttactttacccacaagaaaacaaattttgatgttataaagactttacgaccctaaaaaaacttgtag |
24055077 |
T |
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| Q |
267 |
aaagcagaatcgtaaggagattatattatttcaatcacagccaatcaatttggagaacacttttaatcgttggagccatatg |
348 |
Q |
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| T |
24055076 |
aaagcagaatcgtaaggagattatataatttcaatcacagccaatcaatttggagaacacttttaatcgttggagccatatg |
24054995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 7 - 163
Target Start/End: Complemental strand, 24070152 - 24069996
Alignment:
| Q |
7 |
tcgaagaatatttaaattaataccatatccatgttctttattacttcaaaacttcttaaatatcaatcgaattgtaacattcacatacacatgaagaatg |
106 |
Q |
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||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
24070152 |
tcgaataaaatttaaattaataccatatccaagttctttattacttcaaaacttcttaaatatcaatcgaattgtaacattcacatacacatgaataata |
24070053 |
T |
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| Q |
107 |
ggtattatgtaaaccataatgatgtccggcaataataaatattgattcaaagactat |
163 |
Q |
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| T |
24070052 |
ggtattatgtaaaccataatgatgtccggcaataataaatattgattcaaagactat |
24069996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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