View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14098_high_26 (Length: 223)
Name: NF14098_high_26
Description: NF14098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14098_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 4841063 - 4840879
Alignment:
| Q |
17 |
atgaataatgaaaaataccaaacttaatttgatgttcataaggactattataacggaaacgctaatttaatagcacttttagagaaaatgctatgaaaag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4841063 |
atgaataatgaaaaataccaaacttaatttgatgttcataaggactattataacggaaacgctaatttaatagcacttttagagaaaatgctatgaaaag |
4840964 |
T |
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| Q |
117 |
attgactctaatattaataatagcacttccgttacgcatgctattataacgtgacacctatattagcccttttatagaaagtgct |
201 |
Q |
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| T |
4840963 |
attgactctaatattaataatagcacttccgttacgcatgctattataacgtgacacctatattagcccttttatagaaagtgct |
4840879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 77 - 201
Target Start/End: Original strand, 38285691 - 38285815
Alignment:
| Q |
77 |
gctaatttaatagcacttttagagaaaatgctatgaaaagattgactctaatattaataatagcacttccgttacgcatgctattataacgtgacaccta |
176 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||| | |||||||||||||||||| ||| |
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| T |
38285691 |
gctaatttaatagcacttttagaaaaaatgctatgaaaagattgactataatattaataatagcatttccgttacccgtgctattataacgtgacatcta |
38285790 |
T |
|
| Q |
177 |
tattagcccttttatagaaagtgct |
201 |
Q |
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|||||| | |||||||||||||||| |
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| T |
38285791 |
tattagtctttttatagaaagtgct |
38285815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 4834331 - 4834278
Alignment:
| Q |
17 |
atgaataatgaaaaataccaaacttaa-tttgatgttcataaggactattataa |
69 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4834331 |
atgaataatgaaaaataccaaacttaattttgatgttcataaggactattataa |
4834278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 76 - 201
Target Start/End: Original strand, 28156919 - 28157044
Alignment:
| Q |
76 |
cgctaatttaatagcacttttagagaaaatgctatgaaaagattgactctaatattaataatagcacttccgttacgcatgctattataacgtgacacct |
175 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28156919 |
cgctaatttaatagcacttttagagaaaatgctatgaaaagattgactataatattaataatagcatttccgttacgcatgctattataacgtgacacct |
28157018 |
T |
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| Q |
176 |
atattagcccttttatagaaagtgct |
201 |
Q |
| |
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|||||||||||||||||||||||||| |
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|
| T |
28157019 |
atattagcccttttatagaaagtgct |
28157044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 76 - 201
Target Start/End: Complemental strand, 13070239 - 13070114
Alignment:
| Q |
76 |
cgctaatttaatagcacttttagagaaaatgctatgaaaagattgactctaatattaataatagcacttccgttacgcatgctattataacgtgacacct |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
13070239 |
cgctaatttaatagcacttttagagaaaatgctatgaaaagattgactctaatattaataatagcatttccgttacgcaagctattataacgtgacacct |
13070140 |
T |
|
| Q |
176 |
atattagcccttttatagaaagtgct |
201 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
13070139 |
atattagcccttttatagaaagtgct |
13070114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 76 - 202
Target Start/End: Complemental strand, 14361396 - 14361270
Alignment:
| Q |
76 |
cgctaatttaatagcacttttagagaaaatgctatgaaaagattgactctaatattaataatagcacttccgttacgcatgctattataacgtgacacct |
175 |
Q |
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|
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14361396 |
cgctaatttaataacacttttagagaaaatgctatcaaaagattgactctaatattaataatagcatttccgttacgcatgctattataacgtgacacct |
14361297 |
T |
|
| Q |
176 |
atattagcccttttatagaaagtgctg |
202 |
Q |
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||||||||||||||||| ||||||||| |
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|
| T |
14361296 |
atattagcccttttatacaaagtgctg |
14361270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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