View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14098_high_3 (Length: 757)
Name: NF14098_high_3
Description: NF14098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14098_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 600; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 10 - 741
Target Start/End: Complemental strand, 39777493 - 39776773
Alignment:
| Q |
10 |
acatcatcaacagcatcactagattctgaaatgagcttccttatgtatccacttttggaaattaatggaaactgcaaattacgttagagttatgaaaaat |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39777493 |
acatcatcaacagcatcactagattctgaaatgagcttccttatgtatccactttttgaaattaatggaaactgcaaattacgttagagttatgaaaaat |
39777394 |
T |
|
| Q |
110 |
aattcaataaacagcttaaagtactatgtctatacatatatcacttatattttcctattactattcttgatnnnnnnnnnnnnnnnnnnntactaagaat |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
39777393 |
aattcaataaacagcttaaagtactatgtctatacatatatcacttatattttcctattactattcttgataaaaaaagaaaaaagaaaatactaagaat |
39777294 |
T |
|
| Q |
210 |
tgcatgaacaaccaatatgcggagtcaactaaatagatcaaacgacatcataatgttgtatcatnnnnnnngcaaagaattgattgaaaaaacagaacca |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39777293 |
tgcatgaacaaccaatatgcggagtcaactaaatagatcaaacgacatcataatgttgtatcataaaaaaagcaaagaattgattgaaaaaacagaacca |
39777194 |
T |
|
| Q |
310 |
agtactagaattcattactctccatttaatgatcctatgattagtaagtttgatgtttgagtttgttgactatcttgtgtaacgaataggaagcttcgcc |
409 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39777193 |
agtactagaattcattactctccatttagt-----------tagtaagtttgatatttgagtttgttgactaccttgtgtaacgaataggaagcttcgcc |
39777105 |
T |
|
| Q |
410 |
aatttgaatagcgacatcacttggaatctcctgggagtaattcctgtgataagtggttcaattcaaaggctttcagtaattttcatcatatccaagaaaa |
509 |
Q |
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| T |
39777104 |
aatttgaatagcgacatcacttggaatctcctgggagtaattcctgtgataagtggttcaattcaaaggctttcagtaattttcatcatatccaagaaaa |
39777005 |
T |
|
| Q |
510 |
agttaatattagcatcggcaaatgcatgttataagagttttagaaaaccagaagcataccattcacttgttctcttcatggcactaggaatggctcctcc |
609 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39777004 |
agttaatattagcatcggcaaatgcatgttataagagttttagaaaaccagaagcataccattcacttgttctcttcatggcactaggaatggctcctcc |
39776905 |
T |
|
| Q |
610 |
ttcccgcaaccacggagggttttatgtatccgagactgcaatgcgaccgtgattaaggctgtattgtattggctgcatttgatcgcaattttctgcaata |
709 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39776904 |
ttcccgcaaccacggagggttttatgtatccgagactgcaatgcgaccgtgattaaggctgtattgtattggctgcatttgatcgcaattttctgcaata |
39776805 |
T |
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| Q |
710 |
tatgtattttgtgctgagtggtgtgtgctttt |
741 |
Q |
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| T |
39776804 |
tatgtattttgtgctgagtggtgtgtgctttt |
39776773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 238 - 273
Target Start/End: Complemental strand, 1381263 - 1381228
Alignment:
| Q |
238 |
ctaaatagatcaaacgacatcataatgttgtatcat |
273 |
Q |
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||||||||||||||||||||||||||||| |||||| |
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| T |
1381263 |
ctaaatagatcaaacgacatcataatgttatatcat |
1381228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 2e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 10 - 119
Target Start/End: Original strand, 47798650 - 47798759
Alignment:
| Q |
10 |
acatcatcaacagcatcactagattctgaaatgagcttccttatgtatccacttttggaaattaatggaaactgcaaattacgttagagttatgaaaaat |
109 |
Q |
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|||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
47798650 |
acatcagcaacagcattactagattctgaaatgagcttccttatgtgtccacttttggaaattaatggaaactgcaaattacattagagttatgaaaaat |
47798749 |
T |
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| Q |
110 |
aattcaataa |
119 |
Q |
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|||||||||| |
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| T |
47798750 |
aattcaataa |
47798759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 219 - 415
Target Start/End: Original strand, 47798862 - 47799058
Alignment:
| Q |
219 |
aaccaatatgcggagtcaactaaatagatcaaacgacatcataatgttgtatcatnnnnnnngcaaagaattgattgaaaaaacagaaccaagtactaga |
318 |
Q |
| |
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|||| ||||| ||||||||||| ||||||||||| ||||||||||||| ||||| | ||| ||||||||||||||||| |||||| |||||| |
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| T |
47798862 |
aacctatatgtggagtcaactacatagatcaaaccacatcataatgttctatcaacaaaggtggaaataattgattgaaaaaacattaccaaggactaga |
47798961 |
T |
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| Q |
319 |
attcattactctccatttaatgatcctatgattagtaagtttgatgtttgagtttgttgactatcttgtgtaacgaataggaagcttcgccaatttg |
415 |
Q |
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| T |
47798962 |
aatcattactctccatttaatgatattatgattagtaattttgatatttgaatttgttccctaccttgtgtaacgaataggaagcttcaccaatttg |
47799058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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