View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14098_high_6 (Length: 641)
Name: NF14098_high_6
Description: NF14098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14098_high_6 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 616; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 18 - 641
Target Start/End: Original strand, 28325420 - 28326043
Alignment:
| Q |
18 |
aacacaactgaaacaaggttatgtttgtaattttcttttaccctaatatatccctgactgaatatatatttatttaggttaaatttttctaactgttgtg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
28325420 |
aacacaactgaaacaaggttatgtttgtaattttcttttaccctaatatatccctgactgaatatatatttatttaggttacatttttctaactgttgtg |
28325519 |
T |
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| Q |
118 |
ctgtgcagtgcaatacaatgttgttatcaatgttaagaagaagatacggtggtgctgtttctattattcccagcaacaacaagtttctccctcctcgtcg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28325520 |
ctgtgcagtgcaatacaatgttgttatcaatgttaagaagaagatacggtggtgctgtttctattattcccagcaacaacaagtttctccctcctggtcg |
28325619 |
T |
|
| Q |
218 |
ttccgtttcgacgtgcatgttatcaaaggtactctctaacactaacaataacaataacactaacactattccctatgatgatgattctgggtctagggtt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28325620 |
ttccgtttcgacgtgcatgttatcaaaggtactctctaacactaacaataacaataacactaacactattccctatgatgatgattctgggtctagggtt |
28325719 |
T |
|
| Q |
318 |
attcttcctgattacttatgcttcaacaagtacatttctgctgttacttggtttgaaaacaatctctctgatggttacgcttccatatccgaatataacg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28325720 |
attcttcctgattacttatgcttcaacaagtacatttctgctgttacttggtttgaaaacaatctctctgatggttacgcttccatatccgaatataacg |
28325819 |
T |
|
| Q |
418 |
ccgttttatcttcccttcttagaatgggatatcaccctactgttctttcctttgctcaacaattggaggaatcccacaacaaccatcttcaacgtgttct |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28325820 |
ccgttttatcttcccttcttagaatgggatatcaccctactgttctttcctttgctcaacaattggaggaatcccacaacaaccatcttcaacgtgttct |
28325919 |
T |
|
| Q |
518 |
cccagacattcatacttggacaatcctcatcaaagctcacgctttcgatggtaacatgttttccgccatgtctttcttccataaaatcataaacaacggt |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28325920 |
cccagacattcatacttggacaatcctcatcaaagctcacgctttcgatggtaacatgttttccgccatgtctttcttccataaaatcataaacaacggt |
28326019 |
T |
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| Q |
618 |
caccgtcctactgctgaggaaact |
641 |
Q |
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| T |
28326020 |
caccgtcctactgctgaggaaact |
28326043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 508 - 610
Target Start/End: Complemental strand, 6327225 - 6327123
Alignment:
| Q |
508 |
aacgtgttctcccagacattcatacttggacaatcctcatcaaagctcacgctttcgatggtaacatgttttccgccatgtctttcttccataaaatcat |
607 |
Q |
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|||||||||| |||||||||||||||||| |||||||||||| | |||| |||| |||||||||||| ||| || || | ||| ||| |||| ||||| |
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| T |
6327225 |
aacgtgttctaccagacattcatacttggtcaatcctcatcacatgtcactgtttccatggtaacatgtcttcggctatctgtttattcaataatatcat |
6327126 |
T |
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| Q |
608 |
aaa |
610 |
Q |
| |
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||| |
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| T |
6327125 |
aaa |
6327123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 521 - 633
Target Start/End: Original strand, 28238707 - 28238819
Alignment:
| Q |
521 |
agacattcatacttggacaatcctcatcaaagctcacgctttcgatggtaacatgttttccgccatgtctttcttccataaaatcataaacaacggtcac |
620 |
Q |
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||||||||| |||||| | |||||||||||| ||| || ||||||||||||||| ||| || || ||| | |||||||| ||||| ||| |||||| |
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| T |
28238707 |
agacattcacacttgggctatcctcatcaaatgtcattctgtcgatggtaacatgtcttcagctatctctcttttccataagatcatcgacaccggtcat |
28238806 |
T |
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| Q |
621 |
cgtcctactgctg |
633 |
Q |
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| T |
28238807 |
catcctactgctg |
28238819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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