View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14098_high_9 (Length: 442)
Name: NF14098_high_9
Description: NF14098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14098_high_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 26216600 - 26217024
Alignment:
| Q |
1 |
aatgctttgttggaagaaccaggctttgaggattttgagtcaatgttggcatatctaaaatggagttaatattgttgatcatcttggcatgtgtgcttct |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26216600 |
aatgctttgttggcagaaccaggctttgaggattttgagtcaatgttggcatatctcaaatggagttaatattgttgatcagcttggcatgtgtgcttct |
26216699 |
T |
|
| Q |
101 |
gatatgatcaattggagaaaccaaaattttcaaaacccctgtaagtaaactaatgactgccataaaaattaaaaacaacacaagcggcagttgatgtttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
26216700 |
gatatgatcaattggagaaaccaaaattttcaaaacccctgtaagtaaactaatgactgccataaaaattaaaaacaacacaagcggcggttgatgattc |
26216799 |
T |
|
| Q |
201 |
taacatccaccaattcaataatttgaataaaagactcttaactctacttaagaaagacgagattttctggcgacaacgagcaaaagcattatggtataag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26216800 |
taacatccaccaattcaataatttgaataaaagactcttaactctacttaagaaaaacgagattttctggcgacaacgagcaaaagcattatggtataag |
26216899 |
T |
|
| Q |
301 |
gatggagattaaacaacaaattctttcatgttgcagctacaactagaaagaaggctaaccgaataactagccttagagatgaagatggcacaatatgtag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26216900 |
gatggagattaaacaacaaattctttcatgttgcagctacaactagaaagaaggctaaccgaataactagccttagagatgaagatggcacaatatgtag |
26216999 |
T |
|
| Q |
401 |
aacgtgggacggaatgacttccatg |
425 |
Q |
| |
|
|||| |||||||||||||||||||| |
|
|
| T |
26217000 |
aacgcgggacggaatgacttccatg |
26217024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 16322575 - 16322611
Alignment:
| Q |
318 |
aaattctttcatgttgcagctacaactagaaagaagg |
354 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||| |
|
|
| T |
16322575 |
aaattctttcatgttgcagctatatctagaaagaagg |
16322611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University