View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14098_low_1 (Length: 956)

Name: NF14098_low_1
Description: NF14098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14098_low_1
NF14098_low_1
[»] chr3 (4 HSPs)
chr3 (103-939)||(38155779-38156628)
chr3 (122-190)||(48811405-48811474)
chr3 (122-192)||(46110888-46110959)
chr3 (123-215)||(28874493-28874587)
[»] chr5 (3 HSPs)
chr5 (118-215)||(12198192-12198290)
chr5 (128-200)||(2689277-2689349)
chr5 (128-178)||(24232489-24232539)
[»] chr7 (5 HSPs)
chr7 (117-215)||(47639179-47639279)
chr7 (122-190)||(46726136-46726205)
chr7 (122-199)||(36939471-36939549)
chr7 (122-190)||(2959611-2959680)
chr7 (149-192)||(4133825-4133868)
[»] chr4 (10 HSPs)
chr4 (148-200)||(12618721-12618773)
chr4 (122-215)||(53391245-53391340)
chr4 (123-200)||(5799013-5799091)
chr4 (133-200)||(11260568-11260636)
chr4 (154-200)||(14949014-14949060)
chr4 (122-206)||(31072490-31072576)
chr4 (122-178)||(36112535-36112591)
chr4 (154-190)||(48315957-48315993)
chr4 (122-175)||(13800748-13800802)
chr4 (122-175)||(54552798-54552852)
[»] chr2 (11 HSPs)
chr2 (114-200)||(20128321-20128409)
chr2 (121-200)||(39309755-39309835)
chr2 (127-190)||(24791994-24792058)
chr2 (134-201)||(35022619-35022687)
chr2 (122-200)||(24762741-24762820)
chr2 (122-200)||(24765335-24765414)
chr2 (154-200)||(2713454-2713500)
chr2 (154-215)||(34233933-34233995)
chr2 (117-186)||(37978489-37978559)
chr2 (133-190)||(39445468-39445526)
chr2 (122-190)||(814996-815065)
[»] chr8 (4 HSPs)
chr8 (122-200)||(24733172-24733251)
chr8 (122-175)||(8674459-8674513)
chr8 (122-206)||(44253807-44253892)
chr8 (125-178)||(15353819-15353873)
[»] chr1 (6 HSPs)
chr1 (122-200)||(46803515-46803594)
chr1 (121-190)||(27004060-27004130)
chr1 (122-212)||(43024927-43025019)
chr1 (122-175)||(45775857-45775911)
chr1 (123-175)||(16790297-16790350)
chr1 (122-194)||(27542860-27542933)
[»] scaffold0003 (1 HSPs)
scaffold0003 (122-229)||(353971-354080)
[»] chr6 (1 HSPs)
chr6 (123-175)||(7341412-7341465)


Alignment Details
Target: chr3 (Bit Score: 692; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 692; E-Value: 0
Query Start/End: Original strand, 103 - 939
Target Start/End: Complemental strand, 38156628 - 38155779
Alignment:
Q  103 tttagttaactgggacacttttaaggatcctaaatttaaaaagtattttttaaaaagtcaaatgttacaaatttcattgcattgattatacatatttta- 201  Q
    |||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||     
T  38156628 tttagttaaccgggacacttttaaggatcttaaatttagaaagtattttttaaaaagtcaaatgttacaaatttcaatgcattgattacacatattttaa 38156529  T
Q  202 taaaagtttactataaaatcttcttaaatagtatcatgggggttatcgttaacattttcctataaaatattgttgggcttaaaatgttatgaagcattac 301  Q
    |||||||||||||| ||||||||||| ||  ||||||||||||  ||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||    
T  38156528 taaaagtttactattaaatcttcttatatcatatcatgggggtactcgttaacattttcctataaaatatcgttgggtttaaaatgttatgaagctttac 38156429  T
Q  302 tgaaacttaagtaacaagaaaggtgattatagtgtgtg--gtgtgaattcaatacttaaacaaaaattaaagagtaaggatagagaagttaacacatgag 399  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38156428 tgaaacttaagtaacaagaaaggtgattatagtgtgtgtggtgtgaattcaatacttaaacaaaaattaaagagtaaggatagagaagttaacacatgag 38156329  T
Q  400 ttattttgattccccaaatgagggttagtctaatcttcgcaattgtgaaacttttcatatggtgcttgagaatgttctcaacacatgcaccttcgattct 499  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38156328 ttattttgattccccaaacgagggttagtctaatcttcgcaattgtgaaacttttcatatggtgcttgagaatgttctcaacacatgcaccttcgattct 38156229  T
Q  500 ttttgcctcaacatgcttacacaattattttcttagcctctacatccttacaacaatattcactcatttaatctgtactacttaaaagaagattaaaggt 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38156228 ttttgcctcaacatgcttacacaattattttcttagcctctacatccttacaacaatattcactcatttaatctgtactactt-aaagaagattaaaggt 38156130  T
Q  600 gtttacaagagtgtgattagggctgggatctgctatcattcaatagatgtaaggttaatttgaatacatacataggataaatgctcatatctatatattt 699  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38156129 gtttacaagagtgtgattagggctgggatctgctatcattcaatagatgtaaggttaatttgaatacatacataggataaatcctcatatctatatattt 38156030  T
Q  700 ttcgcaagaggtattgaaatgatgaacactttgatcaaagtaggttacagttgagtgcaatctcttgatgtttaatgttatgaaaccgaatgatatttat 799  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38156029 ttcgcaagaggtattgaaatgatgaacactttgatcaaagtaggttacagttgagtgcaatctcttgatgtttaatgttatgaaaccgaatgatatttat 38155930  T
Q  800 acgtgagtaaagttttcagaaa---cttgatgagcaagctatgactatagtcgttggnnnnnnnggtatccagagaaacgtgttagtgcaattgagagag 896  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||       ||||||||||||||||||| ||||||||||||||||    
T  38155929 acgtgagtaaagttttcagaaacagcttgatgagcaagctatgactatagtcgttggtttttttggtatccagagaaacgtgtcagtgcaattgagagag 38155830  T
Q  897 aatt--------ctatgttatagagaaatgatttaatggatcagttcatat 939  Q
    ||||        |||||||||||||||||||||||||||||||||||||||    
T  38155829 aattctggtcagctatgttatagagaaatgatttaatggatcagttcatat 38155779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 48811474 - 48811405
Alignment:
Q  122 tttaaggatcctaaatttaaaaagtattttttaaaaa-gtcaaatgttacaaatttcattgcattgatta 190  Q
    ||||||||||||||||||| ||| ||||  ||||||| ||| |||||||||||||||| |||||||||||    
T  48811474 tttaaggatcctaaatttagaaaatattcattaaaaaagtctaatgttacaaatttcaatgcattgatta 48811405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 192
Target Start/End: Complemental strand, 46110959 - 46110888
Alignment:
Q  122 tttaaggatcctaaatttaaaaagtattttttaaaaag-tcaaatgttacaaatttcattgcattgattata 192  Q
    ||||||||||||||||||||||| ||||  | |||||| | ||||||||||||||||| | |||| ||||||    
T  46110959 tttaaggatcctaaatttaaaaaatattcctcaaaaagattaaatgttacaaatttcaatacatttattata 46110888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 215
Target Start/End: Original strand, 28874493 - 28874587
Alignment:
Q  123 ttaaggatcctaaatttaaaaagtattttttaaaaa-gtcaaatgttacaaatttcattgcattgattataca-tattttataaaagtttactat 215  Q
    |||||||| ||||||||| |||  ||| |||||||| || |||||||||||||| || ||||||||||| ||| | ||| |||||| ||||||||    
T  28874493 ttaaggatactaaatttagaaaacattctttaaaaaagtaaaatgttacaaattccaatgcattgattacacagtttttcataaaaatttactat 28874587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 118 - 215
Target Start/End: Original strand, 12198192 - 12198290
Alignment:
Q  118 cacttttaaggatcctaaatttaaaaagtattttttaaaaagtcaaatgttacaaatttcattgcattgattatacatatttt-ataaaagtttactat 215  Q
    ||||||||||||| | ||||||||||| |||| ||||||||||||||| |||||||||||| ||| || |||  ||||||||| |||||| ||||||||    
T  12198192 cacttttaaggattccaaatttaaaaaatattgtttaaaaagtcaaatattacaaatttcaatgctttaattgcacatattttcataaaaatttactat 12198290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 2689349 - 2689277
Alignment:
Q  128 gatcctaaatttaaaaagtattttttaaaaagtcaaatgttacaaatttcattgcattgattatacatatttt 200  Q
    |||| |||||||||||| ||||||||||||| |||||||||| |||||  | ||  |||||||||||||||||    
T  2689349 gatcttaaatttaaaaaatattttttaaaaaatcaaatgttataaattcaaatgttttgattatacatatttt 2689277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 24232539 - 24232489
Alignment:
Q  128 gatcctaaatttaaaaagtattttttaaaaagtcaaatgttacaaatttca 178  Q
    ||||||||||||||||| |||| |||||||| | |||| ||||||||||||    
T  24232539 gatcctaaatttaaaaaatattatttaaaaaattaaatattacaaatttca 24232489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 4e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 117 - 215
Target Start/End: Original strand, 47639179 - 47639279
Alignment:
Q  117 acacttttaaggatcctaaatttaaaaagtatt-ttttaaaaagtcaaatgttacaaatttcattgcattgattatac-atattttataaaagtttacta 214  Q
    |||| ||||||||||||||||||||||| |||| ||| ||||| | ||||||||||||||| | || |||||||| || || ||||||||||||||||||    
T  47639179 acacatttaaggatcctaaatttaaaaaatattctttaaaaaaattaaatgttacaaattttaatgtattgattacacaattttttataaaagtttacta 47639278  T
Q  215 t 215  Q
    |    
T  47639279 t 47639279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 46726136 - 46726205
Alignment:
Q  122 tttaaggatcctaaatttaaaaagtattttttaaaa-agtcaaatgttacaaatttcattgcattgatta 190  Q
    ||||||||| | ||||||||||| |||| ||||||| ||||||||||||||||||||| |||||||||||    
T  46726136 tttaaggataccaaatttaaaaaatattctttaaaaaagtcaaatgttacaaatttcaatgcattgatta 46726205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 199
Target Start/End: Original strand, 36939471 - 36939549
Alignment:
Q  122 tttaaggatcctaaatttaaaaagtattttttaaaa-agtcaaatgttacaaatttcattgcattgattatacatattt 199  Q
    |||||||||| |||||||||||| ||||  | |||| ||||||||||||||||||||| |||||| |||| ||| ||||    
T  36939471 tttaaggatcttaaatttaaaaaatattcctcaaaaaagtcaaatgttacaaatttcagtgcattaattacacaaattt 36939549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 2959680 - 2959611
Alignment:
Q  122 tttaaggatcctaaatttaaaaagtatttttt-aaaaagtcaaatgttacaaatttcattgcattgatta 190  Q
    |||||||||| |||||| ||||| |||||||| ||||||| |||||||| |||||| | |||||||||||    
T  2959680 tttaaggatcataaattaaaaaaatattttttgaaaaagttaaatgttataaattttaatgcattgatta 2959611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 4133868 - 4133825
Alignment:
Q  149 tttttaaaaagtcaaatgttacaaatttcattgcattgattata 192  Q
    |||| ||||| ||||||||||||||||||| |||||||||||||    
T  4133868 ttttaaaaaaatcaaatgttacaaatttcaatgcattgattata 4133825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 12618773 - 12618721
Alignment:
Q  148 ttttttaaaaagtcaaatgttacaaatttcattgcattgattatacatatttt 200  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||| |||||    
T  12618773 ttttttaaaaagtcaaatgttataaatttcaatgcattgattatacaaatttt 12618721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 215
Target Start/End: Complemental strand, 53391340 - 53391245
Alignment:
Q  122 tttaaggatcctaaatttaaaaagtattttttaaa-aagtcaaatgttacaaatttcattgcattgattatacata-ttttataaaagtttactat 215  Q
    |||||| || ||||||||| ||| |||| || ||| |||||||||||||||||||||| ||||||||||  ||||| |||||||| ||||||||||    
T  53391340 tttaagaatactaaatttagaaaatattcttaaaagaagtcaaatgttacaaatttcaatgcattgattgcacatatttttataagagtttactat 53391245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 200
Target Start/End: Complemental strand, 5799091 - 5799013
Alignment:
Q  123 ttaaggatcctaaatttaaaaagtatt-ttttaaaaagtcaaatgttacaaatttcattgcattgattatacatatttt 200  Q
    ||||||||| |||||||| ||| |||| |||||||||||||||| |||||||||| | ||| ||||||||||| |||||    
T  5799091 ttaaggatcttaaatttagaaaatattcttttaaaaagtcaaatattacaaatttaaatgcgttgattatacaaatttt 5799013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 11260568 - 11260636
Alignment:
Q  133 taaatttaaaaagtattttttaaaa-agtcaaatgttacaaatttcattgcattgattatacatatttt 200  Q
    |||||||||||| |||| ||||||| ||||||||||||||||||||| |||| |||||| | |||||||    
T  11260568 taaatttaaaaaatattctttaaaaaagtcaaatgttacaaatttcaatgcaatgattacatatatttt 11260636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 14949060 - 14949014
Alignment:
Q  154 aaaaagtcaaatgttacaaatttcattgcattgattatacatatttt 200  Q
    ||||||||||||||||||||||||| ||||||||||| ||| |||||    
T  14949060 aaaaagtcaaatgttacaaatttcaatgcattgattacacaaatttt 14949014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 206
Target Start/End: Complemental strand, 31072576 - 31072490
Alignment:
Q  122 tttaaggatcctaaatttaaaaagtatttttt-aaaaagtcaaatgttacaaatttcattgcattgattataca-tattttataaaa 206  Q
    |||||||||| |||||||| ||| |||| ||| |||||||||||||||||||||| |  ||||||||||| ||| | ||||||||||    
T  31072576 tttaaggatcataaatttagaaaatattctttgaaaaagtcaaatgttacaaattcctatgcattgattacacagttttttataaaa 31072490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 36112535 - 36112591
Alignment:
Q  122 tttaaggatcctaaatttaaaaagtattttttaaaaagtcaaatgttacaaatttca 178  Q
    ||||||||||| ||||| ||||| |||| |||||||| | |||||||||||||||||    
T  36112535 tttaaggatcccaaattaaaaaaatattctttaaaaaattaaatgttacaaatttca 36112591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 190
Target Start/End: Original strand, 48315957 - 48315993
Alignment:
Q  154 aaaaagtcaaatgttacaaatttcattgcattgatta 190  Q
    ||||||||||||||||||||||||| |||||||||||    
T  48315957 aaaaagtcaaatgttacaaatttcaatgcattgatta 48315993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 175
Target Start/End: Complemental strand, 13800802 - 13800748
Alignment:
Q  122 tttaaggatcctaaatttaaaaagtatt-ttttaaaaagtcaaatgttacaaatt 175  Q
    ||||||||||||||||||| ||| |||| ||| |||||||||||| |||||||||    
T  13800802 tttaaggatcctaaatttagaaaatattctttaaaaaagtcaaatattacaaatt 13800748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 175
Target Start/End: Complemental strand, 54552852 - 54552798
Alignment:
Q  122 tttaaggatcctaaatttaaaaagtattttttaaaaa-gtcaaatgttacaaatt 175  Q
    |||||| |||||||||||| ||| |||| |||||||| |||||||||||||||||    
T  54552852 tttaagaatcctaaatttagaaaatattctttaaaaaggtcaaatgttacaaatt 54552798  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 200
Target Start/End: Original strand, 20128321 - 20128409
Alignment:
Q  114 gggacact-tttaaggatcctaaatttaaaaagtattttttaaaa-agtcaaatgttacaaatttcattgcattgattatacatatttt 200  Q
    |||||||| ||||||||||||||||||| ||  |||| ||||||| |||||||||||||||||| || ||||||||||| || ||||||    
T  20128321 gggacactctttaaggatcctaaatttataatttattctttaaaaaagtcaaatgttacaaattccaatgcattgattacacgtatttt 20128409  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 200
Target Start/End: Original strand, 39309755 - 39309835
Alignment:
Q  121 ttttaaggatcctaaatttaaaaagtattttttaaa-aagtcaaatgttacaaatttcattgcattgattatacatatttt 200  Q
    |||||||||| |||| |||| ||| |||| |||||| ||||||||| || ||||||||| || ||||||||||||||||||    
T  39309755 ttttaaggattctaagtttagaaaatattctttaaataagtcaaatatttcaaatttcaatgaattgattatacatatttt 39309835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 24791994 - 24792058
Alignment:
Q  127 ggatcctaaatttaaaaagtattttttaaaa-agtcaaatgttacaaatttcattgcattgatta 190  Q
    |||||| ||||||| ||| |||| ||||||| |||||||||||||||||| || |||||||||||    
T  24791994 ggatcccaaatttagaaaatattctttaaaaaagtcaaatgttacaaattccaatgcattgatta 24792058  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 201
Target Start/End: Original strand, 35022619 - 35022687
Alignment:
Q  134 aaatttaaaaagtattttttaaaa-agtcaaatgttacaaatttcattgcattgattatacatatttta 201  Q
    ||||||||||| ||||| |||||| |||||||| ||| |||||| | ||||||||||| ||||||||||    
T  35022619 aaatttaaaaaatatttcttaaaaaagtcaaatattataaattttaatgcattgattacacatatttta 35022687  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 200
Target Start/End: Complemental strand, 24762820 - 24762741
Alignment:
Q  122 tttaaggatcctaaatttaaaaagtattttttaaaaa-gtcaaatgttacaaatttcattgcattgattatacatatttt 200  Q
    ||||||||||| ||||||| ||| ||||  ||||||| ||||||| ||||||||| || |  ||||||||||||||||||    
T  24762820 tttaaggatcccaaatttagaaaatattccttaaaaaagtcaaatattacaaattccaatatattgattatacatatttt 24762741  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 24765335 - 24765414
Alignment:
Q  122 tttaaggatcctaaatttaaaaagtattttttaaaaag-tcaaatgttacaaatttcattgcattgattatacatatttt 200  Q
    ||||||||||| ||||||| ||| ||||  |||||||  |||||| ||||||||| || ||||||||||| |||||||||    
T  24765335 tttaaggatcccaaatttagaaaatattccttaaaaaaatcaaatattacaaattccaatgcattgattacacatatttt 24765414  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 2713500 - 2713454
Alignment:
Q  154 aaaaagtcaaatgttacaaatttcattgcattgattatacatatttt 200  Q
    |||||||||||||||||||||| || |||| |||||||||| |||||    
T  2713500 aaaaagtcaaatgttacaaattccaatgcaatgattatacagatttt 2713454  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 34233995 - 34233933
Alignment:
Q  154 aaaaagtcaaatgttacaaatttcattgcattgattatacatattt-tataaaagtttactat 215  Q
    |||||||||||| |||||||||||| ||||||||||| ||| ||||  |||||| ||||||||    
T  34233995 aaaaagtcaaatattacaaatttcaatgcattgattacacaaatttgaataaaaatttactat 34233933  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 37978489 - 37978559
Alignment:
Q  117 acacttttaaggatcctaaatttaaaaagtattttttaaaa-agtcaaatgttacaaatttcattgcattg 186  Q
    |||||||||| ||||| ||||||| ||| |||| ||||||| |||||||| |||||||||| | |||||||    
T  37978489 acacttttaaagatcccaaatttagaaaatattctttaaaaaagtcaaatattacaaattttaatgcattg 37978559  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 39445526 - 39445468
Alignment:
Q  133 taaatttaaaaagtatttttta-aaaagtcaaatgttacaaatttcattgcattgatta 190  Q
    |||||||||||| ||||||||| |||||| |||||||| |||||||| |||| ||||||    
T  39445526 taaatttaaaaaatattttttaaaaaagttaaatgttagaaatttcaatgcactgatta 39445468  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 814996 - 815065
Alignment:
Q  122 tttaaggatcctaaatttaaaaagtattttttaaaaag-tcaaatgttacaaatttcattgcattgatta 190  Q
    |||||| |||| ||||||| ||| |||||||||||||  |||||||| ||||||| || |||||||||||    
T  814996 tttaagcatcccaaatttagaaattattttttaaaaaaatcaaatgtcacaaattccaatgcattgatta 815065  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 24733172 - 24733251
Alignment:
Q  122 tttaaggatcctaaatttaaaaagtattttttaaaa-agtcaaatgttacaaatttcattgcattgattatacatatttt 200  Q
    ||||||||||| ||||||||||| |||| | ||||| |||||||||||||||||| || ||||||||||| ||| |||||    
T  24733172 tttaaggatcccaaatttaaaaaatattctctaaaaaagtcaaatgttacaaattacagtgcattgattacacaaatttt 24733251  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 175
Target Start/End: Original strand, 8674459 - 8674513
Alignment:
Q  122 tttaaggatcctaaatttaaaaagtatttttt-aaaaagtcaaatgttacaaatt 175  Q
    ||||||||||| ||||||||||| |||||||| ||||||| ||||||||||||||    
T  8674459 tttaaggatcccaaatttaaaaaatattttttaaaaaagttaaatgttacaaatt 8674513  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 206
Target Start/End: Original strand, 44253807 - 44253892
Alignment:
Q  122 tttaaggatcctaaatttaaaaagtattttttaaaa-agtcaaatgttacaaatttcattgcattgattatacatattttataaaa 206  Q
    ||||||||| | ||||||||||| ||||||| |||| |||||||||||| |||||| |   ||||||||| ||| |||||||||||    
T  44253807 tttaaggattccaaatttaaaaaatatttttaaaaaaagtcaaatgttataaattttaaatcattgattacacaaattttataaaa 44253892  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 15353873 - 15353819
Alignment:
Q  125 aaggatcctaaatttaaaaagtatttttta-aaaagtcaaatgttacaaatttca 178  Q
    |||||||||||||||| ||| ||||||||| |||||| |||| ||||||||||||    
T  15353873 aaggatcctaaatttataaaatattttttaaaaaagtgaaatattacaaatttca 15353819  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 46803515 - 46803594
Alignment:
Q  122 tttaaggatcctaaatttaaaaagtatttttta-aaaagtcaaatgttacaaatttcattgcattgattatacatatttt 200  Q
    ||||||||| |  |||||| ||||||||||||| |||||||||| ||||| ||||||| ||||||||||| |||||||||    
T  46803515 tttaaggattcctaatttagaaagtattttttataaaagtcaaacgttactaatttcaatgcattgattacacatatttt 46803594  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 27004130 - 27004060
Alignment:
Q  121 ttttaaggatcctaaatttaaaaagtatttttta-aaaagtcaaatgttacaaatttcattgcattgatta 190  Q
    |||||| ||||||||||||||||| ||||||||| |||||| ||||||||  ||||||| |||||||||||    
T  27004130 ttttaaagatcctaaatttaaaaaatattttttaaaaaagttaaatgttatcaatttcaatgcattgatta 27004060  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 212
Target Start/End: Complemental strand, 43025019 - 43024927
Alignment:
Q  122 tttaaggatcctaaatttaaaaagtatt-ttttaaaaagtcaaatgttacaaatttcattgcattgattatacatatttt-ataaaagtttac 212  Q
    ||||||||||||| ||||||||| |||| ||| ||||| | |||| |||||||||||| |||| |||||| || |||||| |||||| |||||    
T  43025019 tttaaggatcctatatttaaaaaatattatttaaaaaaattaaatattacaaatttcaatgcactgattacacgtattttcataaaaatttac 43024927  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 175
Target Start/End: Original strand, 45775857 - 45775911
Alignment:
Q  122 tttaaggatcctaaatttaaaaagtatt-ttttaaaaagtcaaatgttacaaatt 175  Q
    ||||||||||||||||||||||| ||||  |||||||||  ||||||||||||||    
T  45775857 tttaaggatcctaaatttaaaaaatattcctttaaaaagataaatgttacaaatt 45775911  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 16790350 - 16790297
Alignment:
Q  123 ttaaggatcctaaatttaaaaagtatttttta-aaaagtcaaatgttacaaatt 175  Q
    |||||||||||||||||| ||| | ||||||| ||||||||||||||| |||||    
T  16790350 ttaaggatcctaaatttagaaaatcttttttaaaaaagtcaaatgttataaatt 16790297  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 27542860 - 27542933
Alignment:
Q  122 tttaaggatcctaaatttaaaaagtatt-ttttaaaaagtcaaatgttacaaatttcattgcattgattataca 194  Q
    ||||||||| | ||||||||||| |||| ||| |||||||||||| ||||| ||| || || ||||||||||||    
T  27542860 tttaaggataccaaatttaaaaaatattctttaaaaaagtcaaatattacatattccaatgtattgattataca 27542933  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 229
Target Start/End: Complemental strand, 354080 - 353971
Alignment:
Q  122 tttaaggatcctaaatttaaaaagtattttttaaaaagtcaaatgttacaaatttcattgcattgat--tatacatattttataaaagtttactataaaa 219  Q
    ||||||||||| ||||||| ||  | |||||||||||||||||| ||||||||| || || | ||||   ||| || |||||||||| |||| ||| |||    
T  354080 tttaaggatcccaaatttagaattttttttttaaaaagtcaaatattacaaattgcaatgtagtgataacataaattttttataaaaatttattattaaa 353981  T
Q  220 tcttcttaaa 229  Q
    | ||||||||    
T  353980 tgttcttaaa 353971  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 7341465 - 7341412
Alignment:
Q  123 ttaaggatcctaaatttaaaaagtatttttt-aaaaagtcaaatgttacaaatt 175  Q
    ||||||||| |||||||| ||| |||||||| ||||||||||||||||| ||||    
T  7341465 ttaaggatcttaaatttataaattatttttttaaaaagtcaaatgttaccaatt 7341412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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